Digital Commons Network^™

Contrasting Responses Of Commercially Important Northwest Atlantic Bivalve Species To Ocean Acidification And Temperature Conditions, Teagan Mcmahon, Diana Thatcher, Branwen Williams, Alan Wanamaker, Brittany Jellison, Heidi Franklin, Katherine Guay, Nina M. Whitney, Joseph A. Stewart, Michèle Lavigne

Faculty Publications

Modern calcifying marine organisms face numerous environmental stressors, including overfishing, deoxygenation, increasing ocean temperatures, and ocean acidification (OA). Coastal marine settings are predicted to become warmer and more acidic in coming decades, heightening the risks of extreme events such as marine heat waves. Given these threats, it is important to understand the vulnerabilities of marine organisms that construct their shells from calcium carbonate, which are particularly susceptible to warming and decreasing pH levels. To investigate the response of four commercially relevant bivalve species to OA and differing temperatures, juvenile Mercenaria mercenaria (hard shell clams), juvenile Mya arenaria (soft shell clams), …

Contrasting Responses Of Commercially Important Northwest Atlantic Bivalve Species To Ocean Acidification And Temperature Conditions, Teagan Mcmahon, Diana Thatcher, Branwen Williams, Alan Wanamaker, Brittany Jellison, Heidi Franklin, Katherine Guay, Nina M. Whitney, Joseph A. Stewart, Michèle Lavigne

Faculty Publications

Modern calcifying marine organisms face numerous environmental stressors, including overfishing, deoxygenation, increasing ocean temperatures, and ocean acidification (OA). Coastal marine settings are predicted to become warmer and more acidic in coming decades, heightening the risks of extreme events such as marine heat waves. Given these threats, it is important to understand the vulnerabilities of marine organisms that construct their shells from calcium carbonate, which are particularly susceptible to warming and decreasing pH levels. To investigate the response of four commercially relevant bivalve species to OA and differing temperatures, juvenile Mercenaria mercenaria (hard shell clams), juvenile Mya arenaria (soft shell clams), …

Activist Archivists: Centering Marginalized Campus Voices And Rebuilding Institutional Knowledge Through Oral History, Kai H. Uchida

Faculty Publications

The rapidly changing face of the UNH system, retirements spurred by COVID, and a challenging financial environment motivated SCA to restructure the ways that they collect and preserve institutional history. Through a two-year pilot program utilizing a new technology called TheirStory -- which hosts, records, transcribes, and stores interviews -- they began plans to record histories from University leadership, faculty, staff, alumni, and students. This poster recounts how the University Archivist shaped the UNH Oral History Project to fill in the institutional gaps of its past, considers how this project forms a microcosm of his curatorial and collection vision as …

Neville Fletcher's Vibrant Valve Voyage, Whitney L. Coyle

Faculty Publications

Fletcher's seminal 1993 paper explores the dynamics of pressure-controlled valves critical in sound production for woodwind and brass instruments and animal vocalizations.1 The study examines four simple valve configurations, determined by the effect of overpressures on valve openings. It identifies conditions under which these valves can sustain self-sustained oscillations, particularly when the ducts connected to the valves are shorter than a quarter of the wavelength at the valve's resonant frequency. The research focuses on the initiation of small amplitude oscillations, setting the stage for understanding larger amplitude nonlinear oscillations.

Integrative Highway Rights-Of-Way Management To Reduce Stormwater Run-Off And Enhance Habitat, Madeline M. Showers, Robin M. Rotman

Faculty Publications

Nature-based management along highway rights-of-way (ROW) has been a focus in several states to benefit pollinators through supporting diverse and native vegetative communities. There is the potential to enhance the ecological benefits of this practice by integrating stormwater management into restoration plans and incorporating other complex, multidisciplinary factors. Historically, lack of technical assistance and limited resources has led managers to use unsustainable roadside practices that reduce the potential ecological services of the ROW; however, integrative management can aid in the prioritization of management efforts and link objectives of various resource agencies. In this literature review, we address the ecological impacts …

Bostock And The Forgotten Eeoc, Sandra F. Sperino

Faculty Publications

In Bostock v. Clayton County, Georgia, the Supreme Court formally recognized that federal discrimination law prohibits discrimination based on sexual orientation and gender identity. The opinion barely mentioned the Equal Employment Opportunity Commission (EEOC), the federal agency charged with enforcing federal discrimination law. Reading Bostock, it would be easy to get the impression that the EEOC played little to no role in the outcome. This Essay reclaims and restores the EEOC's role.

In restoring the EEOC's role in this story, two themes emerge. First, Bostock's methodology erases the administrative agency tasked with enforcing Title VII in ways that are inconsistent …

Interactive Effects Of Co2, Temperature, And Nutrient Limitation On The Growth And Physiology Of The Marine Coccolithophore Emiliania Huxleyi (Prymnesiophyceae), James P. Bradley, Edward A. Laws

Faculty Publications

The marine coccolithophore Emiliania huxleyi (strain PnB 272 B10) was grown in a continuous culture system on a 12:12 light:dark cycle at temperatures from 10 °C to 28 °C under either nutrient-replete or nitrate-limited conditions and at either 493 ppmv (low) or 1003 ppmv (high) partial pressures of CO2 (pCO2). The maximum and minimum nutrient-replete growth rates were 0.751 d⁻¹ at 20 °C and 0.365 d⁻¹ at 10 °C, respectively. Ratios of particulate organic carbon (POC) to particulate inorganic carbon (PIC) were independent of pCO2 and of the degree of nitrate limitation but were temperature dependent and lower …

Combined Toxicity Of Multi-Walled Carbon Nanotubes And Cu2+ On The Growth Of Ryegrass: Effect Of Surface Modification, Dose, And Exposure Time Pattern, Wenwen Xie, Cheng Peng, Weiping Wang, Xiaoyi Chen, Jiaqi Tan, Wei Zhang

Faculty Publications

The escalating release of multi-walled carbon nanotubes (MWCNTs) into the environment has raised concerns due to their potential ecotoxicological impacts. However, their combined phytotoxicity with heavy metals such as copper (Cu) is still unclear. This study investigated the individual and combined toxic effects of MWCNTs (MWCNT, MWCNT-OH, and MWCNT-COOH) and Cu²⁺ on ryegrass (Lolium multiflorum), uniquely considering different addition orders. The results show that Cu severely inhibited the growth of ryegrass while MWCNTs exhibited a hormesis effect on ryegrass. When MWCNT and Cu were combined, the malondialdehyde (MDA) content in ryegrass showed a 32.39% increase at 20 mg/L MWCNT …

Venomcap: An Exon-Capture Probe Set For The Targeted Sequencing Of Snake Venom Genes, Scott L. Travers, Carl R. Hutter, Christopher C. Austin, Stephen C. Donnellan, Matthew D. Buehler, Christopher E. Ellison, Sara Ruane

Faculty Publications

Snake venoms are complex mixtures of toxic proteins that hold significant medical, pharmacological and evolutionary interest. To better understand the genetic diversity underlying snake venoms, we developed VenomCap, a novel exon-capture probe set targeting toxin-coding genes from a wide range of elapid snakes, with a particular focus on the ecologically diverse and medically important subfamily Hydrophiinae. We tested the capture success of VenomCap across 24 species, representing all major elapid lineages. We included snake phylogenomic probes in the VenomCap capture set, allowing us to compare capture performance between venom and phylogenomic loci and to infer elapid phylogenetic relationships. We demonstrated …

Research Gaps And Priorities For Quantitative Microbial Risk Assessment (Qmra), Kerry A. Hamilton, Joanna Ciol Harrison, Jade Mitchell, Mark Weir, Marc Verhougstraete, Charles N. Haas, A. Pouyan Nejadhashemi, Julie Libarkin, Tiong Gim Aw, Kyle Bibby, Aaron Bivins, Joe Brown, Kara Dean, Gwyneth Dunbar, Joseph N.S. Eisenberg, Monica Emelko, Daniel Gerrity, Patrick L. Gurian, Emma Hartnett, Michael Jahne, Rachael M. Jones, Timothy R. Julian, Hongwan Li, Yanbin Li, Jacqueline Mac Donald Gibson, Gertjan Medema, J. Scott Meschke, Alexis Mraz, Heather Murphy, David Oryang, Emmanuel De Graft Johnson Owusu-Ansah, Emily Pasek, Abani K. Pradhan

Faculty Publications

The coronavirus disease 2019 pandemic highlighted the need for more rapid and routine application of modeling approaches such as quantitative microbial risk assessment (QMRA) for protecting public health. QMRA is a transdisciplinary science dedicated to understanding, predicting, and mitigating infectious disease risks. To better equip QMRA researchers to inform policy and public health management, an Advances in Research for QMRA workshop was held to synthesize a path forward for QMRA research. We summarize insights from 41 QMRA researchers and experts to clarify the role of QMRA in risk analysis by (1) identifying key research needs, (2) highlighting emerging applications of …

Threshold Changes In Winter Temperature And Precipitation Drive Threshold Responses Across Nine Global Climate Zones And Associated Biomes, Alexandra R. Contosta, Kyle A. Arndt, Helen M. Baulch, Nora J. Casson, Adrian Harpold, Toni Lyn Morelli, Alexej P.K. Sirén

Faculty Publications

Globally, winter temperatures are rising, and snowpack is shrinking or disappearing entirely. Despite previous research and published literature reviews, it remains unknown whether biomes across the globe will cross important thresholds in winter temperature and precipitation that will lead to significant ecological changes. Here, we combine the widely used Köppen–Geiger climate classification system with worst-case-scenario projected changes in global monthly temperature and precipitation to illustrate how multiple climatic zones across Earth may experience shifting winter conditions by the end of this century. We then examine how these shifts may affect ecosystems within corresponding biomes. Our analysis demonstrates potential widespread losses …

Variations Of Aquaculture Structures, Operations, And Maintenance With Increasing Ocean Energy, Kevin G. Heasman, Nicholas Scott, Tyler Sclodnick, Michael Chambers, Barry Costa-Pierce, Tobias Dewhurst, Wolf Isbert, Bela H. Buck

Faculty Publications

Aquaculture in exposed and/or distant ocean sites is an emerging industry and field of study that addresses the need to improve food security along with the challenges posed by expansion of urban and coastal stakeholders into nearshore and sheltered marine waters. This move necessitates innovative solutions for this industry to thrive in high-energy environments. Some innovative research has increased understanding of the physics, hydrodynamics, and structural requirements enabling the development of appropriate systems. The blue mussel (Mytilus edulis), the New Zealand green shell or green lipped mussel (Perna canaliculus), and the Pacific Oyster (Magallana gigas), are the primary targets for …

Variations Of Aquaculture Structures, Operations, And Maintenance With Increasing Ocean Energy, Kevin G. Heasman, Nicholas Scott, Tyler Sclodnick, Michael Chambers, Barry Costa-Pierce, Tobias Dewhurst, Wolf Isbert, Bela H. Buck

Faculty Publications

Aquaculture in exposed and/or distant ocean sites is an emerging industry and field of study that addresses the need to improve food security along with the challenges posed by expansion of urban and coastal stakeholders into nearshore and sheltered marine waters. This move necessitates innovative solutions for this industry to thrive in high-energy environments. Some innovative research has increased understanding of the physics, hydrodynamics, and structural requirements enabling the development of appropriate systems. The blue mussel (Mytilus edulis), the New Zealand green shell or green lipped mussel (Perna canaliculus), and the Pacific Oyster (Magallana gigas), are the primary targets for …

Oyster Grower Perspectives On Green Crab (Carcinus Maenas) Interactions: Using Applied Social Science To Inform Research And Engagement, Kelsey Meyer-Rust, Lindsey Williams, Krystin Ward, Bonnie Brown

Faculty Publications

Research that informs the New Hampshire Aquaculture industry, which has grown significantly over the past few years, and helps the overall associated watershed community to keep Great Bay Estuary healthy is vital. Specific study of green crabs, Carcinus maenas, and their potential effects on oysters, Crassostrea virginica, is important to gain a better understanding of the impact invasive species may have on these ecologically and economically important bivalves. The aim of this study was to document and understand New Hampshire (NH) oyster growers’ perspectives on the issue of green crab predation of oysters. Through a survey, this study documented a …

Oyster Grower Perspectives On Green Crab (Carcinus Maenas) Interactions: Using Applied Social Science To Inform Research And Engagement, Kelsey Meyer-Rust, Lindsey Williams, Krystin Ward, Bonnie Brown

Faculty Publications

Research that informs the New Hampshire Aquaculture industry, which has grown significantly over the past few years, and helps the overall associated watershed community to keep Great Bay Estuary healthy is vital. Specific study of green crabs, Carcinus maenas, and their potential effects on oysters, Crassostrea virginica, is important to gain a better understanding of the impact invasive species may have on these ecologically and economically important bivalves. The aim of this study was to document and understand New Hampshire (NH) oyster growers’ perspectives on the issue of green crab predation of oysters. Through a survey, this study documented a …

Mutation In Prkra Results In Cerebellar Abnormality And Reduced Elf2Α Phosphorylation In A Model Of Dyt-Prkra, Samuel B. Burnett, Allison M. Culver, Tricia A. Simon, Taylor Rowson, Kenneth Frederick, Kristina Palmer, Stephen A. Murray, Shannon W. Davis

Faculty Publications

Variants in the PRKRA gene, which encodes PACT, cause the early-onset primary dystonia DYT-PRKRA, a movement disorder associated with disruption of coordinated muscle movements. PACT and its murine homolog RAX activate protein kinase R (PKR; also known as EIF2AK2) by a direct interaction in response to cellular stressors to mediate phosphorylation of the α subunit of eukaryotic translation initiation factor 2 (eIF2α). Mice homozygous for a naturally arisen, recessively inherited frameshift mutation, Prkra^lear-5J, exhibit progressive dystonia. In the present study, we investigated the biochemical and developmental consequences of the Prkra^lear-5J mutation. Our results indicated that the …

Coastal Wetlands In The Anthropocene, John Day, Edward Anthony, Robert Costanza, Douglas Edmonds, Joel Gunn, Charles Hopkinson, Michael E. Mann, James Morris, Michael Osland, Tracy Quirk, Andre Rovai, John Rybczyk, Thomas Spencer, Jessica Stephens, Jaia Syvitski, Robert Twilley, Jenneke Visser, John R. White

Faculty Publications

We review the functioning and sustainability of coastal marshes and mangroves. Urbanized humans have a 7,000-year-old enduring relationship to coastal wetlands. Wetlands include marshes, salt flats, and saline and freshwater forests. Coastal wetlands occur in all climate zones but are most abundant in deltas. Mangroves are tropical, whereas marshes occur from tropical to boreal areas. Quantification of coastal wetland areas has advanced in recent years but is still insufficiently accurate. Climate change and sea-level rise are predicted to lead to significant wetland losses and other impacts on coastal wetlands and the humans associated with them. Landward migration and coastal retreat …

Hydrodynamic Exposure – On The Quest To Deriving Quantitative Metrics For Mariculture Sites, Oliver Lojek, Nils Goseberg, Heidi Moe Føre, Tobias Dewhurst, Thea Bölker, Kevin Gerald Heasman, Bela H. Buck, David W. Fredriksson, Samuel Rickerich

Faculty Publications

This work attempts to define metrics for hydrodynamic exposure, using known oceanographic variables to provide a universal site assessment method for mariculture structures. Understanding environmental conditions driving open-ocean mariculture siting is crucial in establishing consistent ocean governance, minimizing adverse environmental impacts, and facilitating economically sustainable farm operations. To provide a metric of oceanic conditions and associated requirements for structural design and operation of aquaculture systems, six Exposure Indices (EI) are proposed that consider physical energy levels related to hydrodynamic forces at a site. Four of the proposed indices consider only environmental conditions, while the other two also consider the dimensions …

Data-Driven Sparse Sensor Placement Optimization On Wings For Flight-By-Feel: Bioinspired Approach And Application, Alex C. Hollenbeck, Atticus J. Beachy, Ramana V. Grandhi, Alexander M. Pankonien

Faculty Publications

Flight-by-feel (FBF) is an approach to flight control that uses dispersed sensors on the wings of aircraft to detect flight state. While biological FBF systems, such as the wings of insects, often contain hundreds of strain and flow sensors, artificial systems are highly constrained by size, weight, and power (SWaP) considerations, especially for small aircraft. An optimization approach is needed to determine how many sensors are required and where they should be placed on the wing. Airflow fields can be highly nonlinear, and many local minima exist for sensor placement, meaning conventional optimization techniques are unreliable for this application. The …

Development And Evaluation Of A Colorimetric Lamp Based-Assay Targeting The Bacteroides Hf183 Marker For Tracking Sewage Pollution In Environmental Waters, Mariah C.A. Do Nascimento, Wendy J.M. Smith, Metasebia Gebrewold, Yawen Liu, Stuart L. Simpson, Aaron Bivins, Paula Rahal, Warish Ahmed

Faculty Publications

Surface waters are vulnerable to contamination by human and animal feces, posing risks to human health due to potential exposure to enteric pathogens. This research developed a colorimetric loop-mediated isothermal amplification (cLAMP) assay to detect sewage associated Bacteroides dorei HF183/BacR287 (HF183) marker in wastewater and environmental water samples. The host sensitivity and host specificity of the assay were evaluated, and their performance was compared to the Bacteroides HF183 qPCR assay using control materials (gBlocks), environmental water samples seeded with untreated sewage, and ambient environmental water samples. In serial dilutions of control materials, qPCR produced quantifiable data across all dilutions, while …

The Overlooked First Intercostal Ligament: Does It Help To Stabilize The Weberian Apparatus?, Jake Leyhr, Tatjana Haitina, Nathan C. Bird

Faculty Publications

The Weberian apparatus is a novel hearing adaptation that facilitates increased hearing sensitivity in otophysan fishes. The apparatus is a complex system composed of modifications to anterior vertebral elements, the inner ear, and the swim bladder. A critical piece of the system that often receives minor attention are the various ligaments that bridge these three regions. The most famous of the ligaments is the interossicular ligament, which connects the Weberian ossicle chain (scaphium–intercalarium–tripus). Several other ligaments are present, including the suspensor (tripus to parapophysis 4) and the triple ligament (tripus–os suspensorium–tunica externa). Here, by combining diffusible iodine-based contrast enhancement (DICE) …

Aspect-Ratio-Dependent Heat Transport By Baroclinic Acoustic Streaming, Jacques Abdul Massih, Remil Mushthaq, Guillaume Michel, Gregory P. Chini

Faculty Publications

Standing acoustic waves have been known to generate Eulerian time-mean ‘streaming’ flows at least since the seminal investigation of Lord Rayleigh in the 1880s. Nevertheless, a recent body of numerical and experimental evidence has shown that inhomogeneities in the ambient density distribution lead to much faster flows than arise in classical Rayleigh streaming. The emergence of these unusually strong flows creates new opportunities to enhance heat transfer in systems in which convective cooling cannot otherwise be easily achieved. To assess this possibility, a theoretical study of acoustic streaming in an ideal gas confined in a rectangular channel with top and …

Aspect-Ratio-Dependent Heat Transport By Baroclinic Acoustic Streaming, Jacques Abdul Massih, Remil Mushthaq, Guillaume Michel, Gregory P. Chini

Faculty Publications

Standing acoustic waves have been known to generate Eulerian time-mean ‘streaming’ flows at least since the seminal investigation of Lord Rayleigh in the 1880s. Nevertheless, a recent body of numerical and experimental evidence has shown that inhomogeneities in the ambient density distribution lead to much faster flows than arise in classical Rayleigh streaming. The emergence of these unusually strong flows creates new opportunities to enhance heat transfer in systems in which convective cooling cannot otherwise be easily achieved. To assess this possibility, a theoretical study of acoustic streaming in an ideal gas confined in a rectangular channel with top and …

The Genomes Of All Lungfish Inform On Genome Expansion And Tetrapod Evolution, Manfred Schartl, Joost M. Woltering, Iker Irisarri, Kang Du, Susanne Kneitz, Martin Pippel, Thomas Brown, Paolo Franchini, Jing Li, Ming Li, Mateus Adolfi, Sylke Winkler, Josane De Freitas Sousa, Zhuoxin Chen, Sandra Jacinto, Evgeny Z. Kvon, Luis Rogério Correa De Oliveira, Erika Monteiro, Danielson Baia Amaral, Thorsten Burmester, Domitille Chalopin, Alexander Suh, Eugene Myers, Oleg Simakov, Igor Schneider, Axel Meyer

Faculty Publications

The genomes of living lungfishes can inform on the molecular-developmental basis of the Devonian sarcopterygian fish–tetrapod transition. We de novo sequenced the genomes of the African (Protopterus annectens) and South American lungfishes (Lepidosiren paradoxa). The Lepidosiren genome (about 91 Gb, roughly 30 times the human genome) is the largest animal genome sequenced so far and more than twice the size of the Australian (Neoceratodus forsteri)¹ and African² lungfishes owing to enlarged intergenic regions and introns with high repeat content (about 90%). All lungfish genomes continue to expand as some transposable elements (TEs) are still active today. In particular, …

Financial Impacts Of 2020 Labor Day Wildfires To Oregon Highways, Kevin Christiansen, Rubayet Bin Mostafiz, Ayat Al Assi, Robert V. Rohli, Carol J. Friedland

Faculty Publications

Wildfire-caused damage to highways has a significant financial cost to the local, regional, and state jurisdictions where they occur. This study examines the financial ramifications of the harm caused to highways by megafires, using a case study of the highways impacted in the U.S. state of Oregon by the five megafires that occurred during the 2020 Labor Day wildfires. This study proposes a method to classify financial road damage from these wildfires based upon curated datasets collected from the Oregon Department of Transportation (ODOT). Hence, this study presents a dataset with labeled classes, which include physical, roadway, and traffic. Physical …

Long-Term Effects Of Climate Change On Juvenile Bull Shark Migratory Patterns, Philip Matich, Jeffrey D. Plumlee, Walter Bubley, Tobey H. Curtis, J. Marcus Drymon, Lindsay L. Mullins, Oliver N. Shipley, Thomas C. Tinhan, Mark R. Fisher

Faculty Publications

Seasonal variability in environmental conditions is a strong determinant of animal migrations, but warming temperatures associated with climate change are anticipated to alter this phenomenon with unknown consequences. We used a 40-year fishery-independent survey to assess how a changing climate has altered the migration timing, duration and first-year survival of juvenile bull sharks (Carcharhinus leucas). From 1982 to 2021, estuaries in the western Gulf of Mexico (Texas) experienced a mean increase of 1.55°C in autumn water temperatures, and delays in autumn cold fronts by ca. 0.5 days per year. Bull shark migrations in more northern estuaries concomitantly changed, with departures …

A Quantitative Adverse Outcome Pathway For Embryonic Activation Of The Aryl Hydrocarbon Receptor Of Fishes By Polycyclic Aromatic Hydrocarbons Leading To Decreased Fecundity At Adulthood, Jon A. Doering, Justin Dubiel, Eric Stock, Cameron H. Collins, Ian Frick, Hunter M. Johnson, Christopher M. Lowrey-Dufour, Justin G.P. Miller, Zhe Xia, Gregg T. Tomy, Steve Wiseman

Faculty Publications

Quantitative adverse outcome pathways (qAOPs) describe the response–response relationships that link the magnitude and/or duration of chemical interaction with a specific molecular target to the probability and/or severity of the resulting apical-level toxicity of regulatory relevance. The present study developed the first qAOP for latent toxicities showing that early life exposure adversely affects health at adulthood. Specifically, a qAOP for embryonic activation of the aryl hydrocarbon receptor 2 (AHR2) of fishes by polycyclic aromatic hydrocarbons (PAHs) leading to decreased fecundity of females at adulthood was developed by building on existing qAOPs for (1) activation of the AHR leading to early …

Comparative Transcriptomic Analyses Reveal Differences In The Responses Of Diploid And Triploid Eastern Oysters To Environmental Stress, Rujuta V Vaidya, Sarah Bodenstein, Dildorakhon Rasulova, Jerome F La Peyre, Morgan W Kelly

Faculty Publications

Triploid oysters are commonly used as the basis for production in the aquaculture of eastern oysters along the USA East and Gulf of Mexico coasts. While they are valued for their rapid growth, incidents of triploid mortality during summer months have been well documented in eastern oysters, especially at low salinity sites. We compared global transcriptomic responses of diploid and triploid oysters bred from the same three maternal source populations at two different hatcheries and outplanted to a high (annual mean salinity = 19.4 ± 6.7) and low (annual mean salinity = 9.3 ± 5.0) salinity site. Oysters were sampled …

Macroevolution Of The Plant–Hummingbird Pollination System, Elisa Barreto, Mannfred M.A. Boehm, Ezgi Ogutcen, Stefan Abrahamczyk, Michael Kessler, Jordi Bascompte, Agnes S. Dellinger, Carolina Bello, D. Matthias Dehling, François Duchenne, Miriam Kaehler, Laura P. Lagomarsino, Lúcia G. Lohmann, María A. Maglianesi, Hélène Morlon, Nathan Muchhala, Juan Francisco Ornelas, Mathieu Perret, Nelson R. Salinas, Stacey D. Smith, Jana C. Vamosi, Isabela G. Varassin, Catherine H. Graham

Faculty Publications

Plant–hummingbird interactions are considered a classic example of coevolution, a process in which mutually dependent species influence each other's evolution. Plants depend on hummingbirds for pollination, whereas hummingbirds rely on nectar for food. As a step towards understanding coevolution, this review focuses on the macroevolutionary consequences of plant–hummingbird interactions, a relatively underexplored area in the current literature. We synthesize prior studies, illustrating the origins and dynamics of hummingbird pollination across different angiosperm clades previously pollinated by insects (mostly bees), bats, and passerine birds. In some cases, the crown age of hummingbirds pre-dates the plants they pollinate. In other cases, plant …

Machine Learning For Automated Classification Of Lung Collagen In A Urethane-Induced Lung Injury Mouse Model, Khalid Hamad Alnafisah, Amit Ranjan, Sushant P. Sahu, Jianhua Chen, Sarah Mohammad Alhejji, Alexandra Noël, Manas Ranjan Gartia, Supratik Mukhopadhyay

Faculty Publications

Dysregulation of lung tissue collagen level plays a vital role in understanding how lung diseases progress. However, traditional scoring methods rely on manual histopathological examination introducing subjectivity and inconsistency into the assessment process. These methods are further hampered by inter-observer variability, lack of quantification, and their time-consuming nature. To mitigate these drawbacks, we propose a machine learning-driven framework for automated scoring of lung collagen content. Our study begins with the collection of a lung slide image dataset from adult female mice using second harmonic generation (SHG) microscopy. In our proposed approach, first, we manually extracted features based on the 46 …