Digital Commons Network^™

Development Of An Ovine Genome Map With Emphasis On In Situ Hybridization, Melanie R. Heaton

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Livestock genome maps are used to identify economic trait loci and loci proximal to genes affecting economically important traits. This research contributes to the development of the ovine genome map by establishing techniques to physically map large DNA inserts to ovine chromosomes using fluorescent in situ hybridization. Fluorescent in situ hybridization techniques were established using yeast artificial chromosomes as DNA probes. Probes were as large as 1,000,000 kilobases and hybridized to fixed ovine metaphase chromosomes from a callipyge ewe. Three yeast artificial chromosome probes contained a genetic marker for the ovine callipyge gene. Probes were assigned to ovine chromosome pair …

The Effect Of A Nutrition And Fitness Program On The Dietary Habits, Fitness Level, And Health Status Of Ute Indian Youth, Alison K. Lemon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Lifestyle changes from traditional diet and activities to modem diets high in fat and sugar, and sedentary habits have increased inherited health risk for diabetes and obesity among Native American youth. Nutrition education and physical activity programs have been recommended to help reduce health-risk factors. This study evaluated a summer nutrition education and fitness program for effectiveness in improving the dietary habits, nutrition knowledge, fitness level, and health status of American Indian children ages 9-14 living on or near the Uintah-Ouray Reservation in Uintah and Duchesne Counties of Eastern Utah.

A 6-week nutrition and fitness program was conducted through the …

Guidelines For Roadside Revegetation To Create Wildlife Habitat In Northern Utah, Lars D. Anderson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Many species of wildlife use roadside vegetation as habitat. The ring-necked pheasant (Phasianus colchicus) utilizes roadsides for all types of cover. Because pheasants are nonmigratory and generally live their entire lives within a 1- to 2-mile radius, pheasants are excellent indicator species to predict both quantity and quality of roadside wildlife habitat. Pheasants were introduced to Utah in the late 1800's. Populations climbed until pheasant habitat occupied 2-4 percent of the total land area in Utah. Populations began to decrease in the 1950's. Since 1962, pheasant populations in Cache County, Utah have dropped 2.71 percent annually. Experts believe …

Clp-C3a, A New Cyclic Lipodepsipeptide From Pseudomonas Syringae, Kwang-Hee Kim

Biology

Cyclic lipodepsipeptides (CLPs), a new class of antifungal agents, are produced by Pseudomonas syringae pv. syringae. To find novel CLP members, bacterial fluorescent isolates from different plant sources were screened for CLP biosynthetic genes syrB and syrD using a polymerase chain reaction (PCR) and Southern blot analyses. A positive isolate, strain C3, isolated from a cherry tree was virulent on immature cherry fruits, possessed the hypersensitivity/pathogenicity gene, hrpZ, and was grown in supplemented potato broth. Purification of a CLP from strain C3 was performed by acetone extraction, XAD-2 column chromatography, and reversed-phase high performance liquid chromatography (HPLC). HPLC …

Reference Levels Of Plasma Cholinesterase Activity From Autumn Migrant Sharp-Shinned (Accipiter Striatus) And Cooper's (Accipiter Cooperii) Hawks, Daniel H. Kim

Biology

Detecting exposure to anticholinergic pesticides involves measuring levels of cholinesterase (ChE) activity. There are few published values for plasma ChE activity from wild avian species, yet reference levels of ChE activity are vital for nonlethal bioassays to determine exposure to carbamate or organophosphate pesticides. I used plasma samples from 102 sharp-shinned hawks (Accipiter striatus) and 45 Cooper's hawks (A. cooperii) captured during autumn migration to establish reference levels of cholinesterase activity. I evaluated the use of a spectrophotometer (SPEC) and 96-well optical microplate reader (MPR) for determining plasma cholinesterase activity from migrating hawks. The SPEC was …

Effects Of Insecticide Spraying For Grasshoppers On The Reproductive Success Of Three Prairie Plant Species In Western North Dakota, Suzanne Digiacomo

Biology

Grasshopper control is often accomplished through application of broad-spectrum insecticides that may also affect many non-target arthropods. To assess whether these insecticides reduce pollinator numbers and hence plant reproductive success, three forb species were examined. Potentilla fruticosa and Calylophus serrulatus were sampled before, immediately after, and approximately one week after spraying. The seed number for both species declined marginally but significantly immediately after spraying. The average weight per achene was significantly lower in spray sites for Potentilla fruticosa, but no significant interaction of time by spray was found for either species. Also, for two germination characters there was no …

Ecological Thought, Now And Then., Jared Glenn Parkinson

Undergraduate Honors Capstone Projects

In recent years a movement has surfaced which has greatly influenced many different aspects of society. This movement, referred to as the environmental movement, is supported by the central idea that humans are internally related to the environment and that humans have the ability to impair natural systems from being able to maintain themselves and evolve. Some activists in this movement believe that the earth is a living organism and that all objects have intrinsic worth. Environmentalists generally accept a more ecocentric view of the wilderness. This environmental movement is referred to by many different names including the ecological, green, …

Ecological Amplitude And Invasion Of Diffuse Knapweed At Yakima Training Center, Washington, Donna Denise Wilcox

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Diffuse knapweed (Centaurea diffusa) is an introduced annual or short-lived perennial from Eurasia that has become a threat to native rangelands in the Pacific Northwest. Military training activities on the Yakima Training Center (YTC) increase the likelihood that knapweed will expand its range at YTC. This study, conducted in a major watershed at YTC, focused on: 1) how a variety of environmental variables influences knapweed distribution, 2) the use of Landsat Thematic Mapper (TM) imagery to map existing knapweed populations, and 3) the use of a logistic regression model and geographical information systems (GIS) to create a potential …

Toward A Balanced Strategy To Address Contaminated Groundwater Plumes At The Massachusetts Military Reservation, Richard C. Peralta

Civil and Environmental Engineering Faculty Publications

This document contains the findings and recommendations of the Technical Review and Evaluation Team (TRET) for the plume containment project at the Massachusetts Military Reservation (MMR). The findings and recommendations are in response to the 60 Percent Plume Containment Design, submitted by Operational Technologies (OpTech) in January 1996. In short, the TRET recommends the MMR depart substantially from the strategy of simultaneous, 100 percent containment and treatment that was assigned to OpTech for design in accordance with the Record of Decision (ROD) for Interim Action. This strategy guided the course of the plume containment project over the past two years

Recreation, At A Glance, Michelle A. Wilkins

Undergraduate Honors Capstone Projects

As Utah prepares to showcase its majestic landscapes worldwide during the 2002 Olympic Games, countless travelers continue to explore the state's splendor. Utah is famous for its land of many faces. From the red rock of Canyonland National Park to the snow-capped mountains along the Wasatch front, the state is rich in natural diversity. This diversity translates into a broad spectrum of recreational opportunities the state can offer. For instance, Utah's alpine and cross-country ski conditions are among the best in the world. In warm months, rigorous alpine and rock trails have earned Utah the reputation as the "bicycling capital …

Where Language Touches The Earth: Folklore And Ecology In Tohono O'Odham Plant Emergence Narratives, Jennifer L. Hughes

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The historical and ecological relationships between the Tohono O'odham and the Sonoran desert landscape are expressed in the stories they tell. The Tohono O'odham have lived in the deserts of southwestern Arizona and northern Mexico for centuries, interacting with their environment and gaining intimate knowledge of desert botanical communities. Many of these interactions are dramatized in their traditional oral narratives. I have characterized those traditional oral narratives that illustrate and articulate Tohoro O'odham interrelationships with Sonoran desert botanical communities as "plant emergence narratives." These stories embody and express the reciprocal relationship between the Tohono O'odham and the plants they cultivate …

Second Growth Forest As Potential Marten Habitat In Western Newfoundland: An Examination Of Forest Habitat Structure And Microtine Abundance, Brian R. Sturtevant

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The American marten (Martes americana) is associated with large tracts of relatively undisturbed, mature coniferous forests. I examined coarse woody debris (CWD) structure and small mammal abundance with respect to forest age and stem structure within second-growth forests, in comparison with old-growth stands in western Newfoundland. Results suggest that a critical change in marten habitat quality may occur at stand senescence, due to decreased tree competition, more complex subcanopy structure, and increased meadow vole (Microtus pennsylvanicus) abundance.

Analysis of stem structure within a chronosequence of 19 second-growth stands indicated high intertree competition, with dense canopy closure …

A Survey Of Employees Of The United States Department Of Agriculture's Animal Damage Control Program, Susan A. Schroeder

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study examined the attitudes of employees of the United States Department of Agriculture's Animal Damage Control (ADC) Program. This research examined ADC employees' attitudes about wildlife, the ADC program and ADC employment, wildlife damage management methods, euthanasia and the killing process, and the role of various public and private groups on ADC policy. This study also applied the theory of organizational capture to the ADC program to test its utility in explaining the attitudes and behaviors of employees. Results were based on a survey of ADC employees conducted in January 1995.

Survey responses were analyzed to explore associations between …

Mule Deer Highway Mortality In Northeastern Utah: An Analysis Of Population-Level Impacts And A New Mitigative System, Mark E. Lehnert

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Rerouting highways to accommodate construction of the Jordanelle Reservoir in northeastern Utah caused a dramatic increase in vehicle collisions with mule deer (Odocoileus hemionus). I evaluated the effectiveness of a new system of highway crosswalk structures installed to reduce deer losses and preserve seasonal migrations. In addition, I constructed computer simulation models to investigate how highway mortality has impacted the Jordanelle deer population.

The crosswalk system restricted deer crossings to specific, well-marked areas along highways where motorists could anticipate them. Subsequent to installation, mortality declined 42.3% and 36.8% along a four-lane and two-lane highway, respectively. I was unable …

An Ecological History Of Tintic Valley, Juab County, Utah, Jeffrey A. Creque

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This work was a case study of historical ecological change in Tintic Valley, Juab County, Utah, an area historically impacted by mining and ranching activities common to much of the American West. The temporal framework for the study was approximately 120 years, the period of direct Euroamerican influence. In recognition of the ecological implications of cultural change, however, the impacts of prehistoric and protohistoric human activity on study area landscape patterns and processes were also explicitly addressed.

The study included a narrative description of historic land uses and ecological change in Tintic Valley, and examined the changes in landscape patterns …

Livestock As Seed Disseminators For Reseeding Degraded Rangelands: The Role Of Dung In Gap Formation And Plant Establishment, Brian S. Auman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Livestock (cattle and sheep) were examined as seed disseminators for reseeding degraded Intermountain rangelands. "Hycrest" crested wheatgrass [Agropyron desertorum (Fisch. ex Link) Schult. X A. cristatum (L.) Gaert.] seed was fed to yearling Holstein steers and Suffolk ewes. Dung was collected from each animal type and deposited on plots of high and low densities of an annual [cheatgrass (Bromus tectorum L.)] and perennial [squirreltail (Sitanion hystrix Nutt.)] grass species. The experiment evaluated the ability of the dung to suppress the resident vegetation, and the recruitment and establishment of Hycrest seedlings emerging from the dung.

Sheep dung had …

Evaluation Of The Delta Waterfowl Foundation's Adopt-A-Pothole Project, Daniel S. Vice

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The establishment of dense nesting cover (DNC) for breeding waterfowl is a common management practice on large blocks of former agricultural land. The Delta Waterfowl Foundation's Adopt-A-Pothole (AAP) program establishes DNC adjacent to small wetland complexes to increase waterfowl use and productivity. I evaluated waterfowl use and nesting success on AAP lease sites in southwestern Manitoba in 993- 94 and compared the relative amount and success of overwater and upland nesting by mallards using these sites.

Diving duck breeding pair densities were higher on treatment sites in both 1993 and 1994 (P = 0.02 and 0.02, respectively). Dabbling duck …

The Influence Of Forest Fragmentation And Landscape Pattern On American Martens And Their Prey, Christina D. Hargis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Habitat fragmentation occurs when large tracts of an orginal habitat are replaced by smaller patches of two or more habitat types, largely through human activities. I studied the behavior of six measures of landscape pattern that seemed appropriate for quantifying fragmentation, and used these measures to investigate the effects of forest fragmentation on American martens (Martes americana) and their prey. The measures I selected were edge density, contagion, mean nearest neighbor distance between patches, mean proximity index, perimeter-area fractal dimension, and mass fractal dimension. To test the behavior of these measures with a variety of landscape patterns, I …

Visitor Use Of Interpretive Facilities At Fossil Butte National Monument, Wyoming, Rizal Bukhari

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Visitors expect to a gain high-quality outdoor experiences at any recreation site they visit. In order to support that effort, most recreation managers utilize interpretive facilities to educate and inform visitors about the site. It is important for interpretive managers to be aware of what kind of interpretive media could best be used in a given setting for the type of visitor anticipated. To accomplish this goal, it is necessary to understand visitors' behavior and incorporate that understanding into the interpretive planning process.

This study looks at visitor use of interpretive facilities provided at Fossil Butte National Monument, Wyoming. The …

Quantification Of Landscape Structure Within The Land Condition-Trend Analysis Monitoring Program At Camp Williams, Utah, Lorraine Munguia

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Land Condition-Trend Analysis (LCTA) program was developed by the U.S. Army to assist in the sustainable management of natural resources on U.S. Army lands. The LCTA program applies a standardized procedure in order to select long-term monitoring sites. The LCTA monitoring program was applied to Camp Williams, a National Army Guard training site located in central Utah. Due to the criteria set by the LCTA monitoring program, 61 percent of Camp Williams was explicitly excluded from the LCTA monitoring protocol because it appeared to be more heterogeneous, which would make it difficult to locate monitoring sites in the field. …

Competitive Interactions Between A Native And Exotic Trout Species In High Mountain Streams, Heather M. Thomas

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Populations of the introduced book trout, Salvelinus fontinalis, have recently become more widespread and abundant in western North American streams, possible at the expense of native Colorado River cutthroat trout, Oncorhynchus clarki pleuriticus. We examined the intensity and potential mechanism of competition between these species.

Feeding experiments in laboratory stream channels showed that cutthroat trout feeding efficiency decreases in the presence of a brook trout. Decreased feeding efficiency appeared to be due to interference, as cutthroat trout were inactive in the presence of the brook trout. Evidence for interference competition in the feeding experiments was also given by the …

Survival Of Microorganisms On Meat Surfaces Treated With Ultra-High Temperatures, Bret Max Mattinson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Sterile ceramic plates and the surface of beef steaks were inoculated with the pathogenic microorganisms Listeria monocytogenes, Campylobacter jejuni, Escherichia coli and Salmonella typhimurium. Samples were also inoculated with nonpathogenic microorganisms Clostridium sporogenes ATCC 7955, Pseudomonas aeruginosa, and Bacillus stearothermophilus. Concentrations of organisms in the pure culture used to inoculate the samples were selected within the range of 10⁶ to 10⁸ colony forming units/ml (CFU/ml). Samples were treated with ultra-high temperature (UHT), and· the surviving organisms were recovered and counted. Meat samples were exposed to 1100°C for 22 seconds.

Beef steaks inoculated with pathogenic microorganisms had …

Fats And Iron In The Rat Colon: Effects On Lipid Peroxidation, Ji Jenny Chin

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Preliminary studies were undertaken to investigate whether or not added iron (0, 35, 880 ppm of iron as ferrous fumarate) and fat type (corn oil, beef tallow, or menhaden oil) influenced the oxidation of the rat diet during storage. Iron level affected thiobarbituric acid (TBA) values only in the menhaden oil diets. Storage for 4 d did not affect TBA values of the diets. Neither food intake nor body weight of the rats was affected by the different diets, suggesting all diets were equally acceptable to rats.

The effects of iron supplementation and fat type on in vivo lipid peroxidation …

Microbiological And Sensory Effects Of Milk Processed For Extended Shelf Life And The Development Of Rapid Methods To Quantitate Spores And Lipase Activity, Michael R. Blake

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The initial aim of this work was to evaluate processing conditions for extended shelf life (ESL) milk to have a shelf life at refrigeration temperature of 60 d. Milk was processed on a pilot-scale ultra-high-temperature processing plant and evaluated for microbial and sensory quality over 60 d at 7°C storage. Results of this study showed that lower process temperatures were preferable to minimize cooked flavors and that the minimum safe processing temperature was 134°C for 4 s as determined by the destruction of bacterial spores in the processed milk.

Consumer preference panel results indicated that consumers preferred milk processed at …

The Effects Of Osmotic Potential On Ammonification, Immobilization, Nitrous Oxide Production, And Nitrification Rates In Penoyer Soil, Andrew P. Low

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An isotopic dilution method was used to test the effects of osmotic potential, (𝛹_s), upon nitrification, ammonification, N-immobilization, and nitrous oxide production rates in soil at solute concentrations encountered in Penoyer soil. A nitrification potential assay was also performed to approximate maximum nitrification rates.

Nitrification potential rates in soil slurries exponentially declined in response to decreased osmotic potential. However, nitrification was independent of salt concentration at the ambient NH₄⁺ concentrations of the soil. The differential response was attributed to the variable NH_4⁺ substrate quantities. The effects of osmotic potential were secondary to NH_{4 …}

A Partial Equilibrium Analysis Of Nafta And Its Impact On U.S. Beef Trade With Canada And Mexico, Srinidhi Ananthramiah

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In September 1993, the United States Congress formally ratified the North American Free Trade Agreement (NAFTA) in conjunction with the legislatures of Canada and Mexico. NAFTA phases out tariff barriers between the United States, Canada, and Mexico over a period of several years.

The primary purpose of this study is to provide an empirical tool for evaluating the effects of NAFTA on beef trade between Canada, Mexico, and the United States. Trends were identified in U.S. beef exports and imports to Canada and Mexico over a period of several years. From the data on import/export quantities and prices, relevant elasticities …

Alteration In Basic Macrophage And Lymphocyte Cytokines From Benzene And Phenol In The Drinking Water Of Male Institute Of Cancer Research Mice, Jay C. Albretsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Groundwater contamination is a concern due to the large number of people that can become exposed to the contaminant. The chemicals benzene and phenol are known groundwater contaminants. The main health problem caused by benzene or phenol is bone marrow toxicity. Benzene and phenol are also immunotoxins reported to cause decreased thymic weights, altered lymphocyte mitogenic responses, and lower antibody production.

Cytokines are key signaling molecules produced by the cells of the immune system to activate other cells in the immune system, produce antibodies, and recruit other cells to sites of inflammation. The purpose of this study was to determine …

Evaluation Of Low-Quality Forages In A Winter Dietary Regimen Of Western White-Face Ewes Used For Milk Production, Raúl Meneses

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The evaluation of ammoniation of mature grass (1/3 Festuca sp, 1/3 Bromus and 1/3 Dactylis sp) as a basal diet for pregnant ewes and its effects on ruminal fermentation were studied. Ammoniation increased the forage dry matter intake (DMI), crude protein (CP), and gross energy digestibility. Ruminal pH and total volatile fatty acid were not affected by ammoniation (P > .05). Individual VFA concentrations were affected significantly.

In a third experiment, ammoniated wheat straw was evaluated as a basal diet for wintering pregnant ewes. Ammoniated straw replaced grass hay in the diet. Dry matter intake was not different (P > .05). Final …

An Integration Of Tillage And Herbicides To Control Jointed Goatgrass (Aegilops Cylindrica Host.) In Winter Wheat, Troy M. Price

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An integrated management approach for jointed goatgrass control was investigated at two farms in northern Utah using three tillage regimes and tree herbicides. The tillage regimes included no tillage, conservation tillage, and conventional tillage. Each regime was composed of different tillage practices common in the Intermountain West. A preemergence herbicide, clomazone, and two postergance herbicides, 2, 4-D and glyphosate, were investigated. Greenhouse studies were also conducted to investigate clomazone efficacy and depth of planting of winter wheat and jointed goatgrass.

Differential sensitivity to clomazone between jointed goatgrass and winter wheat did not occur in the greenhouse for the rates tested. …

Phylogenetic Studies Of The United States Bluetongue Viruses And Characterization Of The Viral Vp4 Protein, I-Jen Huang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bluetongue virus (BTV) is transmitted by arthropod vectors and causes bluetongue disease with serious economic loss in many regions of the world. The replication mechanism of bluetongue virus is still not clear. To have a better understanding regarding the viral replication, the function of each individual protein has to be identified. This study used molecular biology techniques to investigate the function of the inner core protein VP4.

The M1 genes of United States bluetongue virus serotypes-2, -10, -11, -13, and -17 were cloned and sequenced. The length of each of the five M1 genes is 1981 nucleotides. The coding region …