Digital Commons Network^™

Automating And Analyzing Whole-Farm Carbon Models, Aditi Maheshwari

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The goal of this research is to learn about whole farm carbon models. A whole farm carbon model estimates the emissions of greenhouse gasses (GHGs) based on information for a farm. We analyzed two models, HOLOS whole-farm and COMET-Farm, by running the models on random inputs and building classifiers from the runs. HOLOS estimates GHG emissions for a particular year based on crop and animal agriculture input, while COMET-farm adds past and future farm management practices. Users of the models must manually enter farm data through a graphical user interface (GUI), which is a good method for a single farm, …

Harmful Algal Blooms: Dominance In Lakes And Risk For Cyanotoxin Exposure In Food Crops, Austin D. Bartos

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Climate change and human activities are promoting the dominance of a photosynthetic family of aquatic bacteria, cyanobacteria. Blooms of cyanobacteria are not only a visual nuisance but can produce a variety of cyanotoxins than can harm the liver, skin, and nervous system of animals and humans. We analyzed lakes in the contiguous United States and found that between 2007 and 2012, the number of lakes that produced measurable quantities of cyanotoxins increased from 33% to 45%. Nitrogen and phosphorus pollution were the main drivers of cyanobacteria blooms and toxin production between these years. Many of these lakes and reservoirs are …

Teaching Appropriate Feedback Reception Skills Using Computer-Based Training, Seth G. Walker

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Feedback is a commonly used intervention to address performance issues in a number of settings. Most research on feedback has focused on manipulating parameters surrounding the delivery of feedback. However, the interaction between those delivering the feedback and a feedback recipient may also influence the impact of performance feedback. The current study investigated the efficacy of training individuals to receive feedback in an appropriate manner using a computer-based training format. Following computer-based training, participants exhibited increases in accuracy of appropriate feedback behaviors when compared to baseline. Participants also demonstrated slight increases in performance on primary job tasks. This study extends …

Harvest Efficiency Of Forage Grazed By Cattle And The Effect Of Pinyon And Juniper Treatments On Vegetation Cover On The Grand Staircase Escalante National Monument, Ruger P. Carter

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Grand Staircase Escalante National Monument (GSENM), located in central south Utah, currently has 76,957 active grazing animal unit months on the monument. Recently, there has been questions whether the harvest and grazing efficiency coefficients developed in the Midwest are applicable to the arid, bunch grass dominated systems of the GSENM. Harvest and grazing efficiency defines the percentage of allocated forage that is being ingested by the animal, and the percentage that is being wasted. Harvest and grazing efficiency coefficients were calculated on the Lower Cattle allotment on the GSENM by taking total forage production and dividing that by expected …

Development And Identification Of Metrics To Predict The Impact Of Dimension Reduction Techniques On Classical Machine Learning Algorithms For Still Highway Images, Wasim Akram Khan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

We are witnessing an influx of data - images, texts, video, etc. Their high dimensionality and large volume make it challenging to apply machine learning to obtain actionable insight. This thesis explores several aspects pertaining to dimensional reduction: dimension reduction methods, metrics to measure distortion, image preprocessing, etc. Faster training and inference time on reduced data and smaller models which can be deployed on commodity hardware are a critical advantage of dimension reduction. For this study, classical machine learning methods were explored owing to their solid mathematical foundation and interpretability.

The dataset used is a time series of images from …

A Translational Examination Of Alternative-Response Discrimination Training And Resurgence, Kaitlyn O. Browning

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Individuals with neurodevelopmental disorders such as autism spectrum disorders often engage in severe forms of problem behavior. Reward-based behavioral interventions are highly effective at reducing levels of problem behavior and teaching more appropriate and adaptive alternative behaviors. Despite successful reduction in problem behavior during treatment, problem behaviors are susceptible to reoccurrence or relapse. Resurgence is a type of behavioral relapse that is particularly relevant to the treatment of problem behavior and may occur following the worsening of conditions of a more recently learned alternative behavior. That is, if the rewards that were used to teach the alternative behavior are removed …

Impacts Of Tourism On The Ecophysiology Of The Endangered Northern Bahamian Rock Iguana (Cyclura Cychlura), Alison C. Webb

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Increased interest in ecotourism over recent years has led to more direct human-animal interactions and a striking concomitant increase in the provisioning of non-natural food, that may have unintended consequences for the wildlife involved. The critically endangered Northern Bahamian Rock Iguana provides a valuable model to address the potential impact of food provisioning on health as there are populations that represent a graded variation in human presence, with sites experiencing high, low, or no tourism. To assess the potential impacts of tourism on iguana physiology I first reviewed the relevant literature on iguana physiology and then performed three investigations focusing …

A Translational Investigation Of Reinforced Behavioral Variability: Implications For Promoting Behavioral Variability In Individuals With Autism Spectrum Disorder, Ann Galizio

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Behavioral variability is sometimes adaptive and can be maintained by the delivery of reinforcement. Individuals with autism spectrum disorder (ASD) often show restricted and repetitive behaviors. Therefore, interventions to promote behavioral variability in individuals with ASD are needed. The present line of research was designed to inform such interventions by investigating reinforced behavioral variability from basic, applied, and translational perspectives. Each of these laboratory studies involved participants making sequences of well-defined responses, which were compared to previous responses. Responses that meet a variability contingency (i.e., were sufficiently different from previous responses) produced rewards. Studies 1 and 2 were basic experiments, …

Developing And Validating Stealth Assessments For An Educational Game To Assess Young Dual Language Immersion Learners' Reading Comprehension, Frederick J. Poole

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of this multiple-paper dissertation is to design a digital game and stealth assessments within the game to assess young second language learners' Chinese reading proficiency. In Chapter 2 (Paper 1), I describe the game designed for this dissertation and how it was implemented in a dual language immersion classroom. This study found that the digital game and in-class implementation led to significant vocabulary and reading comprehension gains. Further, seven types of support that students needed while playing the game were identified. In Chapter 3 (Paper 2), I describe how educational data mining approaches, and more specifically, how data-driven …

Harmonic Delay Reduction, Jay E. Hinnenkamp

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Stimuli which, during the life of an organism, acquire the ability to increase the probability of behavior that they follow are called conditioned reinforcers. The concurrent-chains procedure has been used to study conditioned reinforcement for over 60 years. During this time several different models have been developed to explain how stimuli become conditioned reinforcers. The three experiments of this dissertation introduced a new quantitative model of conditioned reinforcement (DRT_H) and tested its predictions against four existing models. The results of Experiment 1 indicated that DRT_H improves upon the accuracy of its predecessor, delay reduction theory (Fantino, 1969), …

Ecoacoustic Methods For Multi-Taxa Animal Surveys In The Amazon, Leandro A. Do Nascimento

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Tropical regions host most of the biodiversity found on Earth, but these species-rich areas are constantly threatened by human development and other disturbances that put this diversity of life forms at risk. To avoid extirpations of animal and plant species, scientists and managers rely on accurate monitoring techniques to retrieve information about population trends. This task is not easy, especially in the tropics, where there is often a lack of personnel to conduct surveys, a lack of funding, and the areas are so extensive that many countries need to be involved in monitoring (e.g., Amazon biome). For this reason, scientists …

Rapid: Covid-19 Induced Cessation Of Ecotourism And Supplemental Feeding: Implications For Wildlife Physiology, Reproduction, And The Microbiome, Susannah S. French

Funded Research Records

No abstract provided.

Under Discussion: Free Speech, Cancel Culture, And Compassion, Rachel Robinson-Greene

Languages, Philosophy, and Communication Studies Faculty Publications

In July, 2020, Harper’s Magazine published a letter signed by 153 prominent authors and thinkers. Signatories included figures such as Noam Chomsky, Gloria Steinem, and J.K. Rowling. Their main contention was that an “illiberal left” has emerged in recent political discourse — a left that allows no room for divergent points of view and that deals with “wrongdoers” swiftly and mercilessly.

Genomic Insights Into Speciation History And Local Adaptation Of An Alpine Aspen In The Qinghai–Tibet Plateau And Adjacent Highlands, Jia-Lang Li, Lin-Ling Zhong, Jing Wang, Tao Ma, Kang-Shan Mao, Lei Zhang

Aspen Bibliography

Natural selection serves as an important agent to drive and maintain interspecific divergence. Populus rotundifolia Griff. is an alpine aspen species that mainly occurs in the Qinghai–Tibet Plateau (QTP) and adjacent highlands, whereas its sister species, P. davidiana Dode, is distributed across southwest and central to northeast China in much lower altitude regions. In this study, we collected genome resequencing data of 53 P. rotundifolia and 42 P. davidiana individuals across their natural distribution regions. Our population genomic data suggest that the two species are well delimitated in the allopatric regions, but with hybrid zones in their adjacent region in …

Aspen Next Generation: Conversations From Southern Colorado And Northern New Mexico, Dan Binkley, Bill Romme

Aspen Bibliography

Aspen trees and forests are especially important in the Rocky Mountains. Aspens add beauty to landscapes, foster high diversity and productivity of understory plants, provide for the habitat needs of many species of animals, and moderate fire behavior. There is a perception that aspen trees and stands are not regenerating well in southern Colorado and northern New Mexico; cohorts of trees younger than a few decades are scarce, at least in some areas. The next generation of aspen in the southern Rockies will be influenced by land use decisions, including harvesting, fire policy and management, and browsing by livestock and …

Effect Of Choline Forms And Gut Microbiota Composition On Trimethylamine-N-Oxide Response In Healthy Men, Clara E. Cho, Niklas D. J. Aardema, Madison L. Bunnell, Deanna P. Larson, Sheryl Aguilar, Janet R. Bergeson, Olga V. Malysheva, Marie A. Caudill, Machael Lefevre

Nutrition, Dietetics, and Food Sciences Faculty Publications

Background: Trimethylamine-N-oxide (TMAO), a choline-derived gut microbiota-dependent metabolite, is a newly recognized risk marker for cardiovascular disease. We sought to determine: (1) TMAO response to meals containing free versus lipid-soluble choline and (2) effects of gut microbiome on TMAO response. Methods: In a randomized, controlled, double-blinded, crossover study, healthy men (n = 37) were provided meals containing 600 mg choline either as choline bitartrate or phosphatidylcholine, or no choline control. Results: Choline bitartrate yielded three-times greater plasma TMAO AUC (p = 0.01) and 2.5-times greater urinary TMAO change from baseline (p = 0.01) compared to no choline and phosphatidylcholine. Gut …

Characterization Of A Novel Stat 2 Knock Out Hamster Model Of Crimean Congo Hemorrhagic Fever Virus Pathogenesis, Charlene Ranadheera, Emelissa J. Valcourt, Bryce M. Warner, Guillaume Poliquin, Kyle Rosenke, Kathy Frost, Kevin Tierney, Greg Saturday, Jinxin Miao, Jonna B. Westover, Brian B. Gowen, Stephanie Booth, Heinz Feldmann, Zhongde Wang, David Safronetz

Animal, Dairy, and Veterinary Science Faculty Publications

Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne pathogen causing a febrile illness in humans, which can progress to hemorrhagic manifestations, multi-organ failure, and death. Current mouse models of CCHFV infection reliably succumb to virus challenge but vary in their ability to reflect signs of disease similar to humans. In this study, we established a signal transducer and activator of transcription 2 (STAT2) knockout hamster model to expand the repertoire of animal models of CCHFV pathogenesis that can be used for therapeutic development. These hamsters demonstrated a systemic and lethal disease in response to infection. Hallmarks of human …

Fire Suppression Impacts On Fuels And Fire Intensity In The Western U.S.: Insights From Archaeological Luminescence Dating In Northern New Mexico, Christopher I. Roos, Tammy M. Rittenour, Thomas W. Swetnam, Rachel A. Loehman, Kacy L. Hollenback, Matthew J. Liebmann, Dana Drake Rosenstein

Geosciences Faculty Publications

Here, we show that the last century of fire suppression in the western U.S. has resulted in fire intensities that are unique over more than 900 years of record in ponderosa pine forests (Pinus ponderosa). Specifically, we use the heat-sensitive luminescence signal of archaeological ceramics and tree-ring fire histories to show that a recent fire during mild weather conditions was more intense than anything experienced in centuries of frequent wildfires. We support this with a particularly robust set of optically stimulated luminescence measurements on pottery from an archaeological site in northern New Mexico. The heating effects of an October 2012 …

Do Plant Secondary Metabolite‐Containing Forages Influence Soil Processes In Pasture Systems?, Andrea K. Clemensen, Juan J. Villalba, George E. Rottinghaus, Stephen T. Lee, Frederick D. Provenza, Jennifer R. Reeve

Wildland Resources Faculty Publications

Grazed pastures are susceptible to N loss from urine/manure additions, which increases eutrophication, affecting the global N cycle. Plant secondary metabolites (PSM), such as condensed tannins (CT) and terpenes, influence silviculture soil dynamics by generally decreasing N mineralization. We investigated whether cattle‐grazed pastures of non‐traditional grass and legume forage monoculture strips including CT‐containing sainfoin (Onobrychis viciifolia Scop.) and tall fescue (TF) [Schedonorus arundinaceus (Schreb.) Dumort.] influenced soil dynamics compared with traditional grass and legume forage monoculture strips of alfalfa (Medicago sativa L.), without tannins, and TF. Throughout the study, CT in sainfoin averaged 58.9 g kg^{−1 …}

The Moral Challenges Of Opening Up Schools During The Pandemic, Rachel Robinson-Greene

Languages, Philosophy, and Communication Studies Faculty Publications

As we inch ever closer to August, the question of if and how schools will open in the fall is increasingly pressing on everyone’s minds. Many decisions related to COVID-19 are presented as morally controversial when they really shouldn’t be. The issue of opening the schools, on the other hand, is complex. No matter what decision is made, some individuals and groups will experience significant hardship.

Coqui Frog Predator Avoidance And Recognition, Karen H. Beard

Browse all Datasets

The purpose of this study was to determine whether coqui frogs from their non-native range responded to native predators the same way as frogs from their native range. Frogs were collected from two sites in Puerto Rico (El Yunque and Rio Abajo) in May 2006 and one site in Hawaii (Hilo) in June 2006. At each site, frogs were collected from a high (> 700 m) and low (< 300 m) elevation population. Of the total number of frogs collected, 100 males were randomly selected to be used in this study (45 and 55 from Hawaii and Puerto Rico, respectively). Three tailless whipscorpions (Phrynus longipes) and three tarantulas (Avicularia laeta) were also collected in Puerto Rico in field sites where frogs were collected and shipped back to a laboratory.

Promoting Healthy Decision-Making Via Natural Environment Exposure: Initial Evidence And Future Directions, Meredith S. Berry, Meredith A. Repke, Alexander L. Metcalf, Kerry Jordan

Psychology Faculty Publications

Research within psychology and other disciplines has shown that exposure to natural environments holds extensive physiological and psychological benefits. Adding to the health and cognitive benefits of natural environments, evidence suggests that exposure to nature also promotes healthy human decision-making. Unhealthy decision-making (e.g., smoking, non-medical prescription opioid misuse) and disorders associated with lack of impulse control [e.g., tobacco use, opioid use disorder (OUD)], contribute to millions of preventable deaths annually (i.e., 6 million people die each year of tobacco-related illness worldwide, deaths from opioids from 2002 to 2017 have more than quadrupled in the United States alone). Impulsive and unhealthy …

Preparing And Improving Garden Soil, Katie Wagner, Melanie Stock, Larry A. Sagers

All Current Publications

A great garden starts with healthy soil. In Utah, there are unique considerations for creating and maintaining healthy soils. Native Utah soils are relatively low in organic matter. One of Utah’s most troublesome, pH-related deficiencies is iron chlorosis, a deficiency of plant-available iron. Soil salinity easily increases in Utah. This fact sheet addresses these challenges to help gardeners transform garden soils from brutal to beautiful!

Brain Micrornas Among Social And Solitary Bees, Karen M. Kapheim, Beryl M. Jones, Eirik Søvik, Eckart Stolle, Robert M. Waterhouse, Guy Bloch, Yehuda Ben-Shahar

Biology Faculty Publications

Evolutionary transitions to a social lifestyle in insects are associated with lineage-specific changes in gene expression, but the key nodes that drive these regulatory changes are unknown. We examined the relationship between social organization and lineage-specific microRNAs (miRNAs). Genome scans across 12 bee species showed that miRNA copy-number is mostly conserved and not associated with sociality. However, deep sequencing of small RNAs in six bee species revealed a substantial proportion (20–35%) of detected miRNAs had lineage-specific expression in the brain, 24–72% of which did not have homologues in other species. Lineage-specific miRNAs disproportionately target lineage-specific genes, and have lower expression …

What Drives Bull Prices, And How Much Can I Spend On A Bull?, Matthew D. Garcia, Ryan Larsen, C. K. Chapman

All Current Publications

Several factors determine the age-old question of how much to pay for a bull. These factors are highly variable and can fluctuate from year to year. The five main factors influencing bull prices are explored in this fact sheet, including breed, availability, auction activity, breeder reputation, and genetic potential.

Contested Dam Development In Iran: A Case Study Of The Exercise Of State Power Over Local People, Elham Hoominfar, Claudia Radel

Sociology, Social Work and Anthropology Student Research

In this article, we address the interaction of the Iranian State, an agent of power, with affected village residents, as four dam projects are planned and implemented. Dams, recently positioned as a green energy source, are a central component to Iran’s national development strategies; yet historically their construction has been a source of significant conflict and resistance around the world. We focus on ten villages facing displacement or partial loss of lands at the time of the research, and we answer the question: During dam building and resettlement processes, how have residents experienced their role in decision making and the …

Discovery Of A Novel Analogue Of Fr901533 And The Corresponding Biosynthetic Gene Cluster From Streptosporangium Roseum No. 79089, Fuchao Xu, Yonghong Liang, Jie Ren, Siyuan Wang, Jixun Zhan

Biological Engineering Faculty Publications

FR901533 (1, also known as WS79089B), WS79089A (2), and WS79089C (3) are polycyclic aromatic natural products with promising inhibitory activity to endothelin-converting enzymes. In this work, we isolated five tridecaketide products from Streptosporangium roseum No. 79089, including 1-3, benaphthamycin (4) and a novel FR901533 analogue (5). The structure of 5 was characterized based on spectroscopic data. Compared to the major product 2, the new compound 5 has an additional hydroxyl group at C-12 and an extra methyl group at the 13-OH. The configuration of C-19 of these compounds …

In Vitro Digestibility Of Mountain-Grown Irrigated Perennial Legume, Grass And Forb Forages Is Influenced By Elevated Non-Fibrous Carbohydrates And Plant Secondary Compounds, Yunhua Zhang, Jennifer W. Macadam, Juan J. Villalba, Xin Dai

Plants, Soils, and Climate Faculty Publications

BACKGROUND

Perennial legumes cultivated under irrigation in the Mountain West USA have non‐fibrous carbohydrate (NFC) concentrations exceeding 400 g kg−1, a level commonly found in concentrate‐based ruminant diets. Our objective was to determine the influence of NFC concentration and plant secondary compounds on in vitro rumen digestion of grass, legume and forb forages compared with digestion of their isolated neutral detergent fiber (NDF) fraction. Forages were composited from ungrazed paddocks of rotationally stocked, irrigated monoculture pastures between May and August 2016, frozen in the field, freeze‐dried, and ground.

RESULTS

The maximum rate (RMax) of gas production was greater for the …

Morphological Evidence For An Oral Venom System In Caecilian Amphibians, Pedro Luiz Mailho-Fontana, Marta Maria Antoniazzi, Cesar Alexandre, Daniel Carvalho Pimenta, Juliana Mozer Sciani, Edmund D. Brodie Jr., Carlos Jared

Biology Faculty Publications

Amphibians are known for their skin rich in glands containing toxins employed in passive chemical defense against predators, different from, for example, snakes that have active chemical defense, injecting their venom into the prey. Caecilians (Amphibia, Gymnophiona) are snake-shaped animals with fossorial habits, considered one of the least known vertebrate groups. We show here that amphibian caecilians, including species from the basal groups, besides having cutaneous poisonous glands as other amphibians do, possess specific glands at the base of the teeth that produce enzymes commonly found in venoms. Our analysis of the origin of these glands shows that they originate …

Raman Spectroscopy Characterization Extracellular Vesicles From Bovine Placenta And Peripheral Blood Mononuclear Cells, Han Zhang, Ana Caroline Silva, Wei Zhang, Heloisa M. Rutigliano, Anhong Zhou

Animal, Dairy, and Veterinary Science Faculty Publications

Placenta-derived extracellular vesicles (EVs) are involved in communication between the placenta and maternal immune cells possibly leading to a modulation of maternal T-cell signaling components. The ability to identify EVs in maternal blood may lead to the development of diagnostic and treatment tools for pregnancy complications. The objective of this work was to differentiate EVs from bovine placenta (trophoblast) and peripheral blood mononuclear cells (PBMC) by a label-free, non-invasive Raman spectroscopy technique. Extracellular vesicles were isolated by ultracentrifugation. Dynamic light scattering (DLS) and scanning electron microscopy (SEM) were applied to verify the presence and the size distribution of EVs. Raman …