Digital Commons Network^™

Design, Development, And Field Testing A Visnir Integrated Multi-Sensing Soil Penetrometer, Nuwan K. Wijewardane

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

The research community in soil science and agriculture lacks a cost-effective and rapid technology for in situ, high resolution vertical soil sensing. Visible and near infra-red (VisNIR) technology has the potential to be used for such sensor development due to its ability to derive multiple soil properties rapidly using a single spectrum. Such efforts must, however, overcome a few challenges: (i) a dry ground soil spectral library that can be used to predict the target soil properties accurately, (ii) a robust design which can acquire high quality VisNIR spectra of soil, (iii) an effective method that can link field intact …

Contact Rates With Nesting Birds Before And After Invasive Snake Removal: Estimating The Effects Of Trap-Based Control, Amy A. Yackel Adams, Melia G. Nafus, Page E. Klug, Björn Lardner, M.J. Mazurek, Julie A. Savidge, Robert N. Reed

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive predators are responsible for almost 60% of all vertebrate extinctions worldwide with the most vulnerable faunas occurring on islands. The brown treesnake (Boiga irregularis) is a notorious invasive predator that caused the extirpation or extinction of most native forest birds on Guam. The success of avian reintroduction efforts on Guam will depend on whether snake-control techniques sufficiently reduce contact rates between brown treesnakes and reintroduced birds. Mouse-lure traps can successfully reduce brown treesnake populations at local scales. Over a 22-week period both with and without active snake removal, we evaluated snake-trap contact rates for mouse- and bird-lure traps. Bird-lure …

Resonance Electron Interaction With Five-Membered Heterocyclic Compounds: Vibrational Feshbach Resonances And Hydrogen-Atom Stripping, Stanislav A. Pshenichnyuk, Ilya I. Fabrikant, Alberto Modelli, Sylwia Ptasińska, Alexei S. Komolov

Department of Physics and Astronomy: Faculty Publications

Low-energy (0–15 eV) resonance electron attachment to a series of five-membered heterocyclic rings (isoxazole, imidazole, pyrazole, pyrrole, 1-methyl-, and 2-methylimidazole) is studied under gas-phase conditions by means of electron transmission spectroscopy and dissociative electron attachment spectroscopy (DEAS). Experimental spectral features are assigned on the basis of Hartree-Fock and density functional theory calculations. Sharp features, with a width of less than 0.1 eV, observed in the electron transmission spectra of imidazole, pyrazole, and pyrrole close to 0.45 eV, i.e., well below the energy of their lowest-lying π^∗ shape resonances detected at 1.90, 1.87, and 2.33 eV, respectively, are associated with …

Management Regime And Habitat Response Influence Abundance Of Regal Fritillary (Speyeria Idalia) In Tallgrass Prairie, K. Mccullough, G. Albanese, D.A. Haukos, A.M. Ricketts, S. Stratton

United States Geological Survey: Staff Publications

The >2,570,000-ha Flint Hills ecoregion of Kansas, USA, harbors the largest remaining contiguous tract of tallgrass prairie in North America, a unique system, as the remainder of North America’s tallgrass prairie has succumbed to development and conversion. Consequently, the loss and degradation of tallgrass prairie has reduced populations of many North American prairie-obligate species including the regal fritillary (Speyeria idalia) butterfly. Population abundance and occupied range of regal fritillary have declined >99%, restricting many populations to isolated, remnant patches of tallgrass prairie. Such extensive decline has resulted in consideration of the regal fritillary for protection under the Endangered Species Act. …

Molecular And Morphological Variation Among Populations Of Pediomelum Tenuiflorum (Pursh) A.N. Egan (Fabaceae) In Nebraska, Usa, Chauncey L. Kellar Jr., Roxi Kellar

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Individuals of Pediomelum tenuiflorum, “wild alfalfa”, from disjunct populations in Nebraska vary extensively in their overall gestalt. Those in the western and central part of the state have a very slender growth habit, with thin stems and few, small flowers; whereas, those in the southeast have a very robust growth habit with heavy-looking stems and many tightly clustered flowers. For nearly 200 years, taxonomists have alternated between splitting P. tenuiflorum into two species, with the many-flowered morphotype named P. floribundum, and lumping all the morphological variants into one species as they are now. In this study, we investigated …

An Evaluation Of The Registration And Use Prospects For Four Candidate Toxicants For Controlling Invasive Mongooses (Herpestes Javanicus Auropunctatus), Emily W. Ruell, Chris N. Niebuhr, Robert T. Sugihara, Shane R. Siers

United States Department of Agriculture Wildlife Services: Staff Publications

The eradication or control of invasive small Indian mongooses from islands likely requires toxic baiting when removal by trapping proves insufficient. The one toxic bait currently registered for mongooses in the United States has relatively low palatability and efficacy for mongooses. Developing and registering a new pesticide can be very expensive, while funding for developing toxicants for mongooses is limited. Once registered, use of a toxic bait may be hindered by other factors, such as public opposition to an inhumane toxicant, poorer efficacy than expected, or if the toxic bait is difficult for applicators to apply or store. Therefore, we …

Synthesizing Conservation Motivations And Barriers: What Have We Learned From Qualitative Studies Of Farmers’ Behaviors In The United States?, Pranay Ranjan, Sarah P. Church, Kristin Floress, Linda S. Prokopy

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Since 2011, qualitative studies examining adoption of conservation practices and programs (CPPs) have burgeoned. This article presents a systematic review of all U.S.-based qualitative investigations into CPP adoption since 1996. We found three themes are discussed primarily as motivating adoption: farmer characteristics, environmental awareness, and trust in information sources. Four themes are discussed primarily as barriers to adoption: farm management, negative perceptions of a conservation practice, perceptions that adoption is a risk, and land tenure. Four themes were discussed as both motivations and barriers: economic factors, social norms, perceptions of government programs, and farm characteristics. Overall, we found farmers’ economic …

Network‐Based Feature Selection Reveals Substructures Of Gene Modules Responding To Salt Stress In Rice, Qian Du, Malachy Campbell, Huihui Yu, Kan Liu, Harkamal Walia, Qi Zhang, Chi Zhang

Center for Plant Science Innovation: Faculty Publications

Rice, an important food resource, is highly sensitive to salt stress, which is directly related to food security. Although many studies have identified physiological mechanisms that confer tolerance to the osmotic effects of salinity, the link between rice genotype and salt tolerance is not very clear yet. Association of gene co‐expression network and rice phenotypic data under stress has penitential to identify stress‐responsive genes, but there is no standard method to associate stress phenotype with gene co‐expression network. A novel method for integration of gene co‐expression network and stress phenotype data was developed to conduct a system analysis to link …

How Characteristic Is The Species Characteristic Selection Scale?, Erica F. Stuber, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Aim: The importance of framing investigations of organism–environment relationships to interpret patterns at relevant spatial scales is increasingly recognized. However, most research related to environmental relationships is single‐scaled, implicitly or explicitly assuming that a “species characteristic selection scale” exists. We tested the premise that a single characteristic scale exists to understand species– environment relationships within species by asking (a) what are the characteristic scales of species’ relationships with environmental predictors, and (b) is within species, cross‐predictor consistency in characteristic scales a general phenomenon.

Location: Nebraska, USA.

Time period: 2016.

Major taxa studied: Birds.

Methods: We used data from 86 species …

A Multi-Sensor Phenotyping System: Applications On Wheat Height Estimation And Soybean Trait Early Prediction, Wenan Yuan

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Phenotyping is an essential aspect for plant breeding research since it is the foundation of the plant selection process. Traditional plant phenotyping methods such as measuring and recording plant traits manually can be inefficient, laborious and prone to error. With the help of modern sensing technologies, high-throughput field phenotyping is becoming popular recently due to its ability of sensing various crop traits non-destructively with high efficiency. A multi-sensor phenotyping system equipped with red-green-blue (RGB) cameras, radiometers, ultrasonic sensors, spectrometers, a global positioning system (GPS) receiver, a pyranometer, a temperature and relative humidity probe and a light detection and ranging (LiDAR) …

Observations Of Shear Stress Effects On Staphylococcus Aureus Biofilm Formation, Erica Sherman, Kenneth W. Bayles, Derek Moormeir, Jennifer Endres, Timothy Wei

Department of Mechanical and Materials Engineering: Faculty Publications

Staphylococcus aureus bacteria form biofilms and distinctive microcolony or “tower” structures that facilitate their ability to tolerate antibiotic treatment and to spread within the human body. The formation of microcolonies, which break off, get carried downstream, and serve to initiate biofilms in other parts of the body, is of particular interest here. It is known that flow conditions play a role in the development, dispersion, and propagation of biofilms in general. The influence of flow on microcolony formation and, ultimately, what factors lead to microcolony development are, however, not well understood. The hypothesis being examined is that microcolony structures form …

Are We Getting Better In Using Nitrogen?: Variations In Nitrogen Use Efficiency Of Two Cereal Crops Across The United States, Chaoqun Lu, Jien Zhang, Peiyu Cao, Jerry L. Hatfield

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Spatial variation and temporal trajectory of crop nitrogen use efficiency (NUE) have important implications for nitrogen management and environmental conservation. Previous studies have examined cross‐nation divergences in crop NUE but often overlooked its spatial heterogeneity and cross‐crop differences at subnational scales. We examined the relationship between state‐level NUE and nitrogen fertilizer use for two major fertilizer‐consuming crops, corn and winter wheat, which account for over half of national N fertilizer use in the United States. Since 1970, as N fertilizer use rates have changed, the responses of crop yield and NUE have exhibited large temporal and spatial variations. It is …

Optimization Of Protein Entrapment In Affinity Microcolumns Using Hydrazide-Activated Silica And Glycogen As A Capping Agent, John Vargas-Badilla, Saumen Poddar, Shiden Azaria, Chenhua Zhang, David S. Hage

David Hage Publications

Several approaches were compared for the entrapment of proteins within hydrazide-activated silica for use in affinity microcolumns and high performance affinity chromatography. Human serum albumin (HSA) and concanavalin A (Con A) were used as model proteins for this work. Items considered in this study included the role played by the solution volume, amount of added protein, and use of slurry vs. on-column entrapment on the levels of solute retention and extent of protein immobilization that could be obtained by means of entrapment. The levels of retention and protein immobilization were evaluated by injecting warfarin or 4-methylumbellipheryl α-D-mannopyranoside as solutes with …

Motor-Induced Suppression Of The N100 Event-Related Potential During Motor Imagery Control Of A Speech Synthesizer Brain–Computer Interface, Jonathan S. Brumberg, Kevin M. Pitt

Department of Special Education and Communication Disorders: Faculty Publications

Purpose: Speech motor control relies on neural processes for generating sensory expectations using an efference copy mechanism to maintain accurate productions. The N100 auditory event-related potential (ERP) has been identified as a possible neural marker of the efference copy with a reduced amplitude during active listening while speaking when compared to passive listening. This study investigates N100 suppression while controlling a motor imagery speech synthesizer brain–computer interface (BCI) with instantaneous auditory feedback to determine whether similar mechanisms are used for monitoring BCI-based speech output that may both support BCI learning through existing speech motor networks and be used as a …

Operationalizing Ecological Resilience Concepts For Managing Species And Ecosystems At Risk, Jeanne C. Chambers, Craig R. Allen, Samuel A. Cushman

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

This review provides an overview and integration of the use of resilience concepts to guide natural resources management actions. We emphasize ecosystems and landscapes and provide examples of the use of these concepts from empirical research in applied ecology. We begin with a discussion of definitions and concepts of ecological resilience and related terms that are applicable to management. We suggest that a resilience-based framework for management facilitates regional planning by providing the ability to locate management actions where they will have the greatest benefits and determine effective management strategies. We review the six key components of a resilience-based framework, …

The Perfect Match? Correlates Of Job Placement Among Phd Earners, Andrea Johnson

Department of Sociology: Dissertations, Theses, and Student Research

Earning a doctorate in a field implies a strong desire to stay in that field, yet not all who earn a PhD do stay in their field. Therefore this study assumes that those who leave their chosen field do so either involuntarily or because of strong “pull” factors. Using the Survey of Doctorate Recipients (2015), this study examines a variety of factors that affect job placement among PhD recipients, specifically efforts to “match” doctoral field credentials with occupational outcomes. Analyses explicitly test classic assumptions underlying Human Capital Theory, while also taking into account demographic characteristics social capital differences. Findings indicate …

Drought Analyses Of The Horn´E PoˇZitavie Region (Slovakia) In The Period 1966–2013, Jaroslav Vido, Paulina Nalevankova, Jan Valach, Zbysek Sustek, Tsegaye Tadesse

National Drought Mitigation Center: Faculty Publications

+is study focuses on the characterization of historical drought occurrences in the Horn´e Poˇzitavie region of Slovakia over the period 1966–2013 using Standardized Precipitation-Evapotranspiration Index (SPEI). Trend analyses were evaluated by the Mann–Kendall (MK) test as well as cumulative sum of rank difference (CRD) test. +e results showed that drought occurs in the region regularly (recurrent climate feature), while the trend analysis indicated the trend toward more arid climatic conditions. However, CRD trend analyses showed that the subtrend changed direction toward less drier conditions in the late 1980s and early 1990s. Analyses of SPEI trends in individual months showed a …

Identifying Characteristics Of Actionable Science For Drought Planning And Adaptation, Adam Wilke, Amanda Cravens

United States Geological Survey: Publications

Changing climate conditions can make water management planning and drought preparedness decisions more complicated than ever before. Federal and State natural resource managers can no longer rely solely on historical trends as a baseline and thus are in need of science that is relevant to their specific needs to inform important planning decisions. Questions remain, however, regarding the most effective and efficient methods for extending scientific knowledge and products into management and decision-making. This project analyzed two unique cases of water management to better understand how science can be translated into resource management actions and decision-making, focusing particularly on how …

Method For Fabrication Of A Soft-Matter Printed Circuit Board, Carmel Majidi, Tong Lu, Eric J. Markvicka

Department of Mechanical and Materials Engineering: Faculty Publications

A fabrication process for soft - matter printed circuit boards is disclosed in which traces of liquid - phase Ga - In eutectic ( eGaIn ) are patterned with UV laser micromachining ( UVLM ) . The terminals of the elastomer - sealed LM circuit connect to the surface mounted chips through vertically aligned columns of eGaIn - coated ferromagnetic micro spheres that are embedded within an interfacial elastomer layer .

Experimental Evidence For Adaptation To Species-Specific Gut Microbiota In House Mice, Andrew H. Moeller, João C. Gomes-Neto, Sara Mantz, Hatem Kittana, Rafael R. Segura Munoz, Robert J. Schmaltz, Amanda E. Ramer-Tait, Michael W. Nachman

Department of Food Science and Technology: Faculty Publications

The gut microbial communities of mammals have codiversified with host species, and changes in the gut microbiota can have profound effects on host fitness. Therefore, the gut microbiota may drive adaptation in mammalian species, but this possibility is underexplored. Here, we show that the gut microbiota has codiversified with mice in the genus Mus over the past 6 million years, and we present experimental evidence that the gut microbiota has driven adaptive evolution of the house mouse, Mus musculus domesticus. Phylogenetic analyses of metagenomeassembled bacterial genomic sequences revealed that gut bacterial lineages have been retained within and diversified alongside Mus …

Structure And Genetic Diversity In Wild And Cultivated Populations Of Zapote Mamey (Pouteria Sapota, Sapotaceae) From Southeastern Mexico: Its Putative Domestication Center, Jaime Martínez-Castillo, Nassib H. Blancarte-Jasso, Gabriel Chepe-Cruz, Noemí G. Nah-Chan, Matilde M. Ortiz-García, Renee S. Arias

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Tropical fruit trees are an important component of the human diet; however, little is known about their genetic diversity levels. Zapote mamey (Pouteria sapota) is a tree native to southeastern Mexico and Central America, and Mexico is the leading producer in the world. Studies of the genetic diversity of Zapote mamey have been based on cultivated materials using morphological and biochemical characterization or dominant molecular markers. To gain a deeper understanding about the conservation status of Zapote mamey in its center of origin and domestication, we collected 188 individuals from eight wild and five cultivated populations in southeastern Mexico and …

How Do Ecological Resilience Metrics Relate To Community Stability And Collapse?, Caleb P. Roberts, Dirac L. Twidwell Jr, David G. Angeler, Craig R. Allen

Department of Agronomy and Horticulture: Faculty Publications

The concept of ecological resilience (the amount of disturbance a system can absorb before collapsing and reorganizing) holds potential for predicting community change and collapse—increasingly common issues in the Anthropocene. Yet neither the predictions nor metrics of resilience have received rigorous testing. The crossscale resilience model, a leading operationalization of resilience, proposes resilience can be quantified by the combination of diversity and redundancy of functions performed by species operating at different scales. Here, we use 48 years of sub-continental avian community data aggregated at multiple spatial scales to calculate resilience metrics derived from the cross-scale resilience model (i.e., cross-scale diversity, …

The Landscape Of Rights And Licensing Initiatives For Data Sharing, Sam Grabus, Jane Greenberg

Copyright, Fair Use, Scholarly Communication, etc.

Over the last twenty years, a wide variety of resources have been developed to address the rights and licensing problems inherent with contemporary data sharing practices. The landscape of developments is this area is increasingly confusing and difficult to navigate, due to the complexity of intellectual property and ethics issues associated with sharing sensitive data. This paper seeks to address this challenge, examining the landscape and presenting a Version 1.0 directory of resources. A multi-method study was pursued, with an environmental scan examining 20 resources, resulting in three high-level categories: standards, tools, and community initiatives; and a …

Bibliography Of Assorted Institute Of Agriculture And Natural Resources Publications

School of Natural Resources: Faculty Publications

No abstract provided.

Identification Of Loci Controlling Adaptation In Chinese Soya Bean Landraces Via A Combination Of Conventional And Bioclimatic Gwas, Ying-Hui Li, Delin Li, Yong-Qing Jiao, James C. Schnable, Yan-Fei Li, Hui-Hui Li, Huai-Zhu Chen, Hui-Long Hong, Ting Zhang, Bin Liu, Zhang-Xiong Lui, Qing-Bo You, Yu Tian, Yong Guo, Rong-Xia Guan, Li-Juan Zhang, Ru-Zhen Chang, Zhiwu Zhang, Jochen Reif, Xin-An Zhou, Patrick S. Schnable, Li-Juan Qiu

Department of Agronomy and Horticulture: Faculty Publications

Landraces often contain genetic diversity that has been lost in modern cultivars, including alleles that confer enhanced local adaptation. To comprehensively identify loci associated with adaptive traits in soya bean landraces, for example flowering time, a population of 1938 diverse landraces and 97 accessions of the wild progenitor of cultivated soya bean, Glycine soja was genotyped using tGBS. Based on 99 085 high-quality SNPs, landraces were classified into three subpopulations which exhibit geographical genetic differentiation. Clustering was inferred from STRUCTURE, principal component analyses and neighbour-joining tree analyses. Using phenotypic data collected at two locations separated by 10 degrees of latitude, …

Center For Grassland Studies, Volume 25, Issue 2, Summer 2019

Center for Grassland Studies: Newsletters

19th Annual Nebraska Grazing Conference: August 12-14

Director's Column - Twenty-five Years of Impact

You’re Invited to CGS Open House

Alumni Update: Chelsea Luthy, Community Development Specialist, Central Nebraska Economic Development District (CNEDD)

Congratulations Graduates!

Your Input Needed for CGS Comprehensive Review

Proposed Name Change for Grazing Livestock Systems

PGA Golf Management Alum Takes Win

CGS Awards 2019-2020 Scholarships and Fellowships

Nebraska Sandhills Focus of Fall Seminar Series

Grazing Livestock Systems and Range Clubs Host Banquet

2019 Nebraska Grazing Conference … Register Now!

NGC Registration Scholarship Fund Available

Meeting The Vision Of The Ngss: Critical Factors Of Effective Science Teaching (Poster), Elizabeth B. Lewis, Lyrica L. Lucas, Amy Tankersley, Elizabeth Hasseler, Brandon Helding

Department of Teaching, Learning, and Teacher Education: Presentations

With new national science education standards, we must understand how to prepare science teachers capable of advancing reform initiatives. In a 3-year longitudinal study we adopted a multi-method approach to investigate beginning science teachers’ instructional practices. We analyzed transcripts, observed science lessons, and documented weeks of lessons. Using this large dataset we posed research questions about the use of NGSS scientific practices in teachers’ science lessons (Project #1) and classroom diversity as it relates to teachers’ use of inquiry (Project #2). In order to expand our coding capability of science teaching data for use in our structural equation modelling efforts …

Transmission Dynamics Of Toxoplasma Gondii In Arctic Foxes (Vulpes Lagopus): A Long-Term Mark-Recapture Serologic Study At Karrak Lake, Nunavut, Canada, Emilie Bouchard, Stacey A. Elmore, Ray T. Alisauskas, Gustaf Samelius, Alvin A. Gajadhar, Keaton Schmidt, Sasha Ross, Emily J. Jenkins

United States Department of Agriculture Wildlife Services: Staff Publications

Transmission dynamics of Toxoplasma gondii, a parasite of importance for wildlife and human health, are enigmatic in the Arctic tundra, where free-ranging wild and domestic felid definitive hosts are absent and rarely observed, respectively. Through a multiyear mark-recapture study (2011– 17), serosurveillance was conducted to investigate transmission of T. gondii in Arctic foxes (Vulpes lagopus) in the Karrak Lake region, Nunavut, Canada. Sera from adult foxes and fox pups were tested for antibodies to T. gondii by using serologic methods, including the indirect fluorescent antibody test, direct agglutination test, and modified agglutination test. The overall seroprevalence was 39% in adults …

Modeling The Interplay Between Photosynthesis, Co2 Fixation, And The Quinone Pool In A Purple Non-Sulfur Bacterium, Adil Alsiyabi

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Rhodopseudomonas palustris CGA009 is a purple non-sulfur bacterium (PNSB) that can fix CO₂ and nitrogen or break down organic compounds for its carbon and nitrogen requirements. Light, inorganic, and organic compounds can all be used for its source of energy. Excess electrons produced during its metabolic processes can be exploited to produce hydrogen gas or biodegradable polyesters (polyhydroxybutyrate). A genome-scale metabolic model of the bacterium was reconstructed to study the interactions between photosynthesis, carbon dioxide fixation, and the redox state of the quinone pool. A comparison of model-predicted flux values with published in vivo MFA fluxes resulted in predicted …

Gamma Sigma Delta, Nebraska Chapter Newsletter, Issue #57 Summer 2019

Gamma Sigma Delta, Nebraska Chapter: Newsletters

In this issue:

President's message, Gary Brewer

Welcome new members

Gamma Sigma Delta scholarship winners: Kaitlin Taylor and Micah Most

Recipients of Gamma Sigma Delta Awards:

Award of Merit for Outstanding Achievement: Terence Hejny and Marjorie J. Kostelnik

Excellence in Research Award: Rodney Moxley

Excellence in Teaching Award: Jennifer Wood

Excellence in Extension Award: Amit Jhala

Outstanding Graduate Student Award: Meetpal Kukal

Outstanding Graduate Student Finalists: Ethan Barnes, Jordan Reinders, Luis Eduardo Sabillón Galeas, Rafael Segura Munoz, and Junsi Yang

Arthur von Bergen Memorial Award: Shannyn Bird and Molli Hagge

Outstanding Undergraduate Student: Erika Swenson

Outstanding Undergraduate Student Finalists: Brianna …