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Selenoprotein Oxidoreductase With Specificity For Thioredoxin And Glutathione Systems, Qi-An Sun, Leo Kirnarsky, Simon Sherman, Vadim N. Gladyshev

Department of Biochemistry: Faculty Publications

Thioredoxin (Trx) and glutathione (GSH) systems are considered to be two major redox systems in animal cells. They are reduced by NADPH via Trx reductase (TR) or oxidized GSH (GSSG) reductase and further supply electrons for deoxyribonucleotide synthesis, antioxidant defense, and redox regulation of signal transduction, transcription, cell growth, and apoptosis. We cloned and characterized a pyridine nucleotide disulfide oxidoreductase, Trx and GSSG reductase (TGR), that exhibits specificity for both redox systems. This enzyme contains a selenocysteine residue encoded by the TGA codon. TGR can reduce Trx, GSSG, and a GSH-linked disulfide in in vitro assays. This unusual substrate specificity …

The Cia5 Gene Controls Formation Of The Carbon Concentrating Mechanism In Chlamydomonas Reinhardtii, Youbin Xiang, Jun Zhang, Donald P. Weeks

Department of Biochemistry: Faculty Publications

Wild-type Chlamydomonas reinhardtii cells shifted from high concentrations (5%) of CO2 to low, ambient levels (0.03%) rapidly increase transcription of mRNAs from several CO₂-responsive genes. Simultaneously, they develop a functional carbon concentrating mechanism that allows the cells to greatly increase internal levels of CO₂ and HCO₃. The cia5 mutant is defective in all of these phenotypes. A newly isolated gene, designated Cia5, restores transformed cia5 cells to the phenotype of wild-type cells. The 6,481-bp gene produces a 5.1-kb mRNA that is present constitutively in light in high and low CO₂ both in …

C3 Origins Of The C4 Pathway Regulatory Enzyme, Ppdk-Rp, C. J. Chastain, Gautam Sarath, Raymond Chollet

Gautam Sarath Publications

A current view of C₄ and CAM evolution holds that all of the constituent enzymes of the C₄ pathway preexisted in C₃ plants, albeit functioning in nonphotosynthetic capacities.

Molecular Characterization Of Cephalothorax, The Tribolium Ortholog Of Sex Combs Reduced, Carmelle D. Curtis, Jennifer A. Brisson, Mark A. Decamillis, Teresa D. Shippy, Susan J. Brown, Robin E. Denell

School of Biological Sciences: Faculty Publications

Sex combs reduced (Scr), a Hox gene located in the Antennapedia complex of Drosophila melanogaster, is required for the proper development of the labial and first thoracic segments. The Tribolium castaneum genetically defined locus Cephalothorax (Cx) is a candidate Scr ortholog based on the location of Cx in the beetle Homeotic complex and mutant effects on the labial and first thoracic segments. To address this hypothesis, we have cloned and characterized the Tribolium ortholog of Scr (TcScr). The transcription unit is less complex and encodes a smaller protein than Scr. The predicted …

Rhinocyllus Conicus: Initial Evaluation And Subsequent Ecological Impacts In North America, A. Gassmann, Svata M. Louda

School of Biological Sciences: Faculty Publications

Renewed debate over the risk of non-target effects in biological control reflects, in part, the recent quantification of direct and indirect ecological effects of the flowerhead weevil, Rhinocyllus conicus Frol., in North America. To help resolve the issue, we review the published data for R. conicus from both Europe and North America: pre-release (1961-1968), post-release (1969-1985) and more recent (1986-1999). Our aim was to determine the extent to which host range expansion on to native North American species, and the associated ecological effects, were predicted or predictable. Our overall conclusion is that more was known than is generally realized, yet …

Contrasting Effects Of Plant Richness And Composition On Insect Communities: A Field Experiment, Nick M. Haddad, David Tilman, John Haarstad, Mark Ritchie, Johannes M.H. Knops

School of Biological Sciences: Faculty Publications

We experimentally separated the effects of two components of plant diversity—plant species richness and plant functional group richness—on insect communities. Plant species richness and plant functional group richness had contrasting effects on insect abundances, a result we attributed to three factors. First, lower insect abundances at higher plant functional group richness were explained by a sampling effect, which was caused by the increasing likelihood that one low-quality group, C4 grasses, would be present and reduce average insect abundances by 25%. Second, plant biomass, which was positively related to plant functional group richness, had a strong, positive effect on insect abundances. …

Notes And Comments: Food Web Laws Or Niche Theory? Six Independent Empirical Tests, Kirk O. Winemiller, Eric R. Pianka, Laurie J. Vitt, Anthony Joern

School of Biological Sciences: Faculty Publications

Over the past 2 decades, empirical food webs have been shown to possess regular patterns of various kinds. Some of the first food web patterns were reported as “food web laws,” the most notable being the link-species scaling law. This empirically derived law described an inverse relationship between community species richness and web connectance (Cohen and Briand 1984; Cohen and Newman 1985). Subsequent evaluation of food webs constructed with more detailed data falsified (Warren 1989; Winemiller 1989a, 1990; Hall and Raffaelli 1991; Polis 1991) and modified (Warren 1990; Martinez 1991, 1992; Pimm et al. 1991; Martinez et al. 1999) many …

Optimal Patch-Leaving Behavior: A Case Study Using The Parasitoid Cotesia Rubecula, Brigitte Tenhumberg, Mike A. Keller, Hugh P. Possingham, Andrew J. Tyre

School of Biological Sciences: Faculty Publications

1. Parasitoids are predicted to spend longer in patches with more hosts, but previous work on Cotesia rubecula (Marshall) has not upheld this prediction. Tests of theoretical predictions may be affected by the definition of patch leaving behavior, which is often ambiguous.

2. In this study whole plants were considered as patches and assumed that wasps move within patches by means of walking or flying. Within-patch and between-patch flights were distinguished based on flight distance. The quality of this classification was tested statistically by examination of log-survivor curves of flight times.

3. Wasps remained longer in patches with higher host …

Using Cox’S Proportional Hazard Models To Implement Optimal Strategies: An Example From Behavioral Ecology, Brigitte Tenhumberg, M. A. Keller, Hugh P. Possingham

School of Biological Sciences: Faculty Publications

Simple behavioral rules, or “rules of thumb,” which lead to behavior that closely approximates an optimal strategy, have generated a lot of recent interest in the field of foraging behavior. In this paper, we derive rules of thumb from a stochastic simulation model in which the foragers behave optimally. We use a particular biological system: the patch leaving behavior of a parasitoid. We simulate parasitoids whose patch leaving behavior is determined by a stochastic dynamic programming (SDP) model, while allowing parasitoids to make mistakes in their estimation of host density when arriving in a patch We use Cox’s proportional hazards …

Mean Time To Extinction Of A Metapopulation With An Allee Effect, Chad Brassil

School of Biological Sciences: Faculty Publications

The incorporation of Allee effects into a simple metapopulation extinction model reveals a large non-linear reduction in mean time to extinction with small changes in an Allee limit. The extent of this reduction is dependent on the level of migration in the metapopulation. With small amounts of migration, small changes in the Allee limit result in large changes in the meantime to extinction. With higher levels of migration, the mean time to extinction is not as sensitive to changes in the Allee limit, becoming more similar to the single population case. The metapopulation modeled here is a set of nine …

Microbially Catalyzed Nitrate-Dependent Oxidation Of Biogenic Solid-Phase Fe(Ii) Compounds, Karrie A. Weber, Flynn W. Picardal, Eric E. Roden

School of Biological Sciences: Faculty Publications

The potential for microbially catalyzed NO₃^—-dependent oxidation of solid-phase Fe(II) compounds was examined using a previously described autotrophic, denitrifying, Fe(II)-oxidizing enrichment culture. The following solid-phase Fe(II)-bearing minerals were considered: microbially reduced synthetic goethite, two different end products of microbially hydrous ferric oxide (HFO) reduction (biogenic Fe₃O₄ and biogenic FeCO₃), chemically precipitated FeCO₃, and two microbially reduced iron(III) oxide-rich subsoils. The microbially reduced goethite, subsoils, and chemically precipitated FeCO₃ were subject to rapid NO₃^—-dependent Fe(II) oxidation. Significant oxidation of biogenic Fe₃O₄ was observed. Very …

Secreted Euryarchaeal Microhalocins Kill Hyperthermophilic Crenarchaea, Cynthia Haseltine, Tiffany Hill, Rafael Montalvo-Rodriguez, Samantha K. Kemper, Richard F. Shand, Paul H. Blum

School of Biological Sciences: Faculty Publications

Few antibiotics targeting members of the archaeal domain are currently available for genetic studies. Since

bacterial antibiotics are frequently directed against competing and related organisms, archaea by analogy

might produce effective antiarchaeal antibiotics. Peptide antibiotic (halocin) preparations from euryarchaeal

halophilic strains S8a, GN101, and TuA4 were found to be toxic for members of the hyperthermophilic

crenarchaeal genus Sulfolobus. No toxicity was evident against representative bacteria or eukarya. Halocin S8

(strain S8a) and halocin R1 (strain GN101) preparations were cytostatic, while halocin A4 (strain TuA4)

preparations were cytocidal. Subsequent studies focused on the use of halocin A4 preparations and Sulfolobus …

A Cost Of Reproduction In Drosophila Melanogaster: Stress Susceptibility, Adam B. Salmon, David B. Marx, Lawrence G. Harshman

Lawrence G. Harshman Publications

Little is known about physiological mechanisms that underlie the cost of reproduction. We tested the hypothesis that stress susceptibility is a cost of reproduction. In one test of our hypothesis, Dro-sophila melanogaster females were exposed to a juvenile hormone analog (methoprene) to stimulate egg production followed by stress assays. A sterile stock of D. melanogaster was employed as a control for reproduction. Exposure of fertile females to methoprene resulted in an increase in female repro-duction and increased susceptibility to oxidative stress and starvation (compared to solvent con-trols). Sterile females did not exhibit a decrease in stress resistance. Mating also stimulated …

Female Sensitivity To Diet And Irradiation Treatments Underlies Sex-Mortality Differentials In The Mediterranean Fruit Fly, James R. Carey, Pablo Liedo, Hans-Georg Müller, Jane-Ling Wang, Brad Love, Lawrence G. Harshman, Linda Partridge

Lawrence G. Harshman Publications

Large-scale experiments on medflies that were subjected to sterilizing doses of ionizing radiation (plus intact controls) and maintained on either sugar-only or full, protein-enriched diets revealed that, whereas the mortality trajectories of both intact and irradiated male cohorts maintained on both diets are similar, the mortality patterns of females are highly variable. Mean mortality rates at 35 days in male cohorts ranged from 0.2 to 0.3 but in female cohorts ranged from 0.09 to 0.35, depending on treatment. The study reports three main influences: (a) qualitative differences exist in the sex–mortality response of medflies subjected to dietary manipulations and irradiation, …

Biodiversity And Decomposition In Experimental Grassland Ecosystems, Johannes M. H. Knops, David A. Wedin, David Tilman

School of Biological Sciences: Faculty Publications

We examined the impact of biodiversity on litter decomposition in an experiment that manipulated plant species richness. Using biomass originating from the experimental species richness gradient and from a species used as a common substrate, we measured rates of decomposition in litterbags in two locations: in situ in the experiment plots and in an adjacent common garden. This allowed us to separate the effects of litter quality and decomposition location on decomposition. We found that plant species richness had a significant, but minor negative effect on the quality (nitrogen concentration) of the biomass. Neither litter type nor location had a …

Genetic Consequences Of Polygyny And Social Structure In An Indian Fruit Bat, Cynopterus Sphinx. I. Inbreeding, Outbreeding, And Population Subdivision, Jay F. Storz, Hari Bhat, Thomas Kunz

Jay F. Storz Publications

Population subdivision into behaviorally cohesive kin groups influences rates of inbreeding and genetic drift and has important implications for the evolution of social behavior. Here we report the results of a study designed to test the hypothesis that harem social structure promotes inbreeding and genetic subdivision in a population with overlapping generations. Genetic consequences of harem social structure were investigated in a natural population of a highly polygynous fruit bat, Cynopterus sphinx (Chiroptera: Pteropodidae), in western India. The partitioning of genetic variance within and among breeding groups was assessed using 10-locus microsatellite genotypes for 431 individually marked bats. Genetic analysis …

Clinal Variation In Body Size And Sexual Dimorphism In An Indian Fruit Bat, Cynopterus Sphinx (Chiroptera: Pteropodidae), Jay F. Storz, J. Balasingh, Hari Bhat, P. Thiruchenthil Nathan, D. Paramanantha Swami Doss, A. Antony Prakash, Thomas H. Kunz

Jay F. Storz Publications

Geographic variation in body size and sexual dimorphism of the short-nosed fruit bat (Cynopterus sphinx ) was investigated in peninsular India. Bats were sampled at 12 localities along a 1,200 km latitudinal transect that paralleled the eastern flanks of the Western Ghats. The geographic pattern of variation in external morphology of C. sphinx conforms to the predictions of Bergmann’s Rule, as indicated by a steep, monotonic cline of increasing body size from south to north. This study represents one of the first conclusively documented examples of Bergmann’s Rule in a tropical mammal and confirms that latitudinal clines in body …

Giant Vacuoles Observed In Dictyostelium Discoideum, Aidong Yuan, Catherine P. Chia

Papers in Microbiology

Large intracellular vacuoles, >4 μm in diameter and either round or oval-shaped, were observed infrequently in Dictyostelium discoideum amoebae of axenically-grown strain AX2 (only 1 in 10⁶–10⁸ cells). These previously unreported single or multiple “giant” vacuoles were more common, however, in newly germinated KAX3 cells (0.55% of the population) and AT-K_neg, a strain that lacks an esterase (0.47% of the population). A vacuolar H⁺-ATPase was enriched in their membranes of intracellular giant vacuoles, indicating that the vacuoles were related possibly to both endosomes and the contractile vacuole compartment. When monitored over time, giant …

A Synopsis Of The Ferns And Fern Allies Of Nebraska, With Maps Of Their Distribution, Steven B. Rolfsmeier, Robert B. Kaul, David M. Sutherland

School of Biological Sciences: Faculty Publications

An annotated list and country-by-country distribution maps are presented for the 32 species of ferns and fern allies native to Nebraska, based upon field and herbarium studies and critical evaluation of the literature. Native to the state are Isoëtes melanopoda, Selaginella rupestris, five species of Equisetum, and 25 species in 18 genera of ferns. Three native species are here verified for the first time, based upon recent collections: Matteuccia struthiopteris var. pensylvanica, Ophioglossum engelmannii, and Pellacaglabella ssp. glabella. Isoëtes melanopoda was rediscovered in 2000, the first record since 1941. Rejected are published reports of …

Synlophe In Ostertagia Cf. Kasakhstanica (Nematoda: Ostertagiinae), The Minor Morphotype Of O. Bisonis From Western North America, Eric P. Hoberg, Arthur Abrams

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Ostertagia cf. kasakhstanica. the putative minor morphotype of the polymorphie ostertagiine O. bisonis, is reported in Bison bison from South Dakota. Descriptions of the synlophe and details of other diagnostic characters useful in identification and differentiation of this minor morphotype from other ostertagiines in wild and domestic ruminants from western North America are presented. Laterally, the cervical synlophe is consistent with Type Ib pattern among ostertagiines and is within the range of variation previously described for O. bisonis. Among recognized minor morphotypes of ostertagiines in wild and domestic ruminants from North America, O. kasakhstanica is distinct from …

A New Lungworm In Muskoxen: An Exploration In Arctic Parasitology, Susan J. Kutz, Eric P. Hoberg, Lydden Polley

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Ruminants are vital elements of the Holarctic ecosystem. Little is known, however, of the structure or biology of their parasite fauna, particularly in North America. Global warming, coupied with increasing human activity in the Arctic, requires enhanced intemational interdisciplinary efforts to better understand the many factors, including parasites, that influence the population health of caribou, reindeer, muskoxen and wild sheep. The discovery of an unusual new genus of protostrongylid lung nematode in muskoxen from the central Canadian Arctic is described, and the intricacies of the parasite's relationship with its muskoxen definitive hosts, its gastropod intermediate hosts and the arctic environment …

New Host And Geographic Records For Two Protostrongylids In Dall's Sheep, Susan J. Kutz, A. M. Veitch, Eric P. Hoberg, B. T. Elkin, Emily J. Jenkins, L. Polley

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Biodiversity survey and inventory have resulted in new information on the distribution of Protostrongylidae in Dall’s sheep (Ovis dalli dalli) from the Northwest Territories (Northwest Territories, Canada) and from Alaska (Alaska, USA). In 1998, Parelaphostrongylus odocoilei adults were found for the first time in the skeletal muscles of Dall’s sheep in the Mackenzie Mountains (Northwest Territories). Adult P. odocoilei were associated with petechial and ecchymotic hemorrhages and localized myositis; eggs and larvae in the lungs were associated with diffuse granulomatous pneumonia. Experimental infections of the slugs Deroceras laeve and Deroceras reticulatum with dorsal-spined first-stage larvae assumed to be …

Gastrointestinal Strongyles In Wild Ruminants, Eric P. Hoberg, A. Alan Kocan, Lora G. Rickard

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Parasitologists have long studied helminth infections in wildlife species and have documented the existence of many organisms from a diversity of mammalian hosts. With this accumulation of information has come improved understanding of the significance of these organisms and the diseases they produce in their mammalian hosts. Some of the most notable examples include the metastrongyloid lungworms, Trichinella spiralis, and Elaeophora schneideri, which are covered separately in this volume. It is, however, for the group of parasites referred to as gastrointestinal nematodes that we have accumulated the most data. Only recently has progress been made in determining the …

Evaluation Of The Specificity Of Five Oligoprobes For Identification Of Cyathostomin Species From Horses, J. E. Hodgkinson, S. Love, J. Ralph Lichtenfels, S. Palfreman, Y. H. Ramsey, J. B. Matthews

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Here, we report evaluation of five oligoprobes designed from intergenic spacer (IGS) region sequences for identification of cyathostomin species. Oligoprobes were designed for identification of Cylicocyclus ashworthi, Cylicocyclus nassatus, Cylicostephanus longibursatus, Cylicostephanus goldi and a fifth probe designed to identify all members of this tribe. PCR amplification of IGS DNA from 16 cyathostomin species allowed sequence comparison and identification of four putative species-specific probes. Southern blotting of amplified products from 16 species showed that all probes were species-specific. The fifth probe recognised all 16 cyathostomin species but did not bind to members of the genus Strongylus. Furthermore, these probes …

Presentation Of The Asp Distinguished Service Award To Robert L. Rausch, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Over the past 50 years Robert Rausch has been at the forefront of research on the systematics, taxonomy, biogeography, epidemiology, and pathology of helminth parasites in vertebrate hosts. Research programs and projects have continually emphasized the complex interface of parasitology, sylvatic distributions of pathogens in wild mammals, and public health, whether dealing with tapeworms such as Echinococcus or Diphyllobothrium or with nematodes such as Trichinella. Most meticulous in research, contributions by Dr. Rausch have been characterized by their innovative nature, depth and scope of detail, complete articulation and examination of hypotheses, and novel insights integrating parasites and parasitism within …

Umingmakstrongylus Pallikuukensis (Nematoda: Protostrongylidae) In Gastropods: Larval Morphology, Morphometrics, And Development Rates, Susan J. Kutz, Eric P. Hoberg, Lydden Polley

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Morphological and morphometric aspects of larval development of Umingmakstrongylus pallikuukensis in Deroceras laeve and the effects of temperature on development rates in D. laeve and Deroceras reticulatum were investigated in the laboratory. Larval stages were best differentiated by separation of cuticular sheaths, tail structure, and viability following digestion. Growth in body and esophagus width was observed during the first-stage within the intermediate host, but the major increases in body length and width occurred immediately following the second molt. Larval development in D. laeve and D. reticulatum occurred more rapidly at warmer temperatures. The calculated threshold temperatures were 8.5 and 9.5 …

Ancestral Divergence, Genome Diversification, And Phylogeographic Variation In Subpopulations Of Sorbitol-Negative, Β-Glucuronidase- Negative Enterohemorrhagic Escherichia Coli O157, Jaehyoung Kim, Joseph Nietfeldt, Jingliang Ju, John Wise, Narelle Fegan, Patricia Desmarchelier, Andrew K. Benson

Department of Food Science and Technology: Faculty Publications

The O157:H7 lineage of enterohemorrhagic Escherichia coli is a geographically disseminated complex of highly related genotypes that share common ancestry. The common clone that is found worldwide carries several markers of events in its evolution, including markers for acquisition of virulence genes and loss of physiological characteristics, such as sorbitol fermentation ability and β-glucuronidase production. Populations of variants that are distinct with respect to motility and the sorbitol and β-glucuronidase markers appear to have diverged at several points along the inferred evolutionary pathway. In addition to these variants, distinct subpopulations of the contemporary non-sorbitol-fermenting, β-glucuronidase-negative O157:H7 clone were recently detected …

So You Want To Work With Wolves?, John A. Shivik

United States Department of Agriculture Wildlife Services: Staff Publications

Growing up with three older sisters was a bit like being raised by wolves. One of their favorite games was called “stop hitting yourself.” To play, I was immobilized, and then with my arms overpowered, I was forced to repeatedly pummel my own noggin while they uttered the name of the game. Watching yourself hit yourself, feeling the pain and humiliation, yet being unable to stop is somewhat like being a federal biologist working with wolves. I’ve learned humility from my experiences but also formed the opinion that if you want to work with wolves, first consider medication; if that …

Design Of A Laboratory Secondary Hazard Study, David A. Goldade, Peter J. Savarie, Jerome C. Hurley, Stanley A. Gaddis, John J. Johnston

United States Department of Agriculture Wildlife Services: Staff Publications

Factors influencing the design and execution of a secondary hazard study are presented using the anticoagulant rodenticide, difethialone, as a model. Frequently, regulatory agencies require a determination of the potential hazard posed to non-target species by the application of pesticides. This hazard can occur through: 1) primary hazard, direct consumption of the bait or formulation containing the pesticide, or 2) secondary hazard, indirect consumption of the pesticide via ingestion of biological matrices such as animals or plants containing pesticide residues. In making this determination, the selection of appropriate test species as well as routes and level of exposure are critical. …

Introduction To Pesticides And Wildlife, John J. Johnston

United States Department of Agriculture Wildlife Services: Staff Publications

A pesticide is a substance intended for destroying, repelling or mitigating any animal, microorganism or plant pest. While pesticides are commonly chemical agents, biological or physical agents can also be pesticides. Many people equate the term pesticide with insecticide. However, there are a plethora of pesticides for which insects are not the target pest. Examples include herbicides, fungicides, rodenticides, acaricides, larvacides, etc. Additionally, pesticides are not limited to toxicants, but also include repellents, attractants and growth regulators (1 ) .

Pesticides are nearly ubiquitous in today's world. In agriculture, insecticides, nematicides and herbicides are applied to plants and soil to …