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Evaluating Dimensionality Reduction For Genomic Prediction, Vamsi Manthena, Diego Jarquín, Rajeev K. Varshney, Manish Roorkiwal, Girish Prasad Dixit, Chellapilla Bharadwaj, Reka Howard Oct 2022

Evaluating Dimensionality Reduction For Genomic Prediction, Vamsi Manthena, Diego Jarquín, Rajeev K. Varshney, Manish Roorkiwal, Girish Prasad Dixit, Chellapilla Bharadwaj, Reka Howard

Department of Statistics: Faculty Publications

The development of genomic selection (GS) methods has allowed plant breeding programs to select favorable lines using genomic data before performing field trials. Improvements in genotyping technology have yielded high-dimensional genomic marker data which can be difficult to incorporate into statistical models. In this paper, we investigated the utility of applying dimensionality reduction (DR) methods as a pre-processing step for GS methods. We compared five DR methods and studied the trend in the prediction accuracies of each method as a function of the number of features retained. The effect of DR methods was studied using three models that involved the …


Evaluating Dimensionality Reduction For Genomic Prediction, Vamsi Manthena, Diego Jarquín, Rajeev K. Varshney, Manish Roorkiwal, Girish Prasad Dixit, Chellapilla Bharadwaj, Reka Howard Oct 2022

Evaluating Dimensionality Reduction For Genomic Prediction, Vamsi Manthena, Diego Jarquín, Rajeev K. Varshney, Manish Roorkiwal, Girish Prasad Dixit, Chellapilla Bharadwaj, Reka Howard

Department of Statistics: Faculty Publications

The development of genomic selection (GS) methods has allowed plant breeding programs to select favorable lines using genomic data before performing field trials. Improvements in genotyping technology have yielded high-dimensional genomic marker data which can be difficult to incorporate into statistical models. In this paper, we investigated the utility of applying dimensionality reduction (DR) methods as a pre-processing step for GS methods. We compared five DR methods and studied the trend in the prediction accuracies of each method as a function of the number of features retained. The effect of DR methods was studied using three models that involved the …


Coastal Wetland Area Change For Two Freshwater Diversions In The Mississippi River Delta, John R. White, Brady Couvillion, John W. Day Oct 2022

Coastal Wetland Area Change For Two Freshwater Diversions In The Mississippi River Delta, John R. White, Brady Couvillion, John W. Day

United States Geological Survey: Staff Publications

Coastal systems around the globe are being re-integrated with adjacent river systems to restore the natural hydrologic connection to riparian wetlands. The Mississippi River sediment diversions or river reconnections are one such tool to combat high rates of wetland loss in coastal Louisiana, USA by providing freshwater, sediment, and nutrients. There has been some disagreement in the published literature whether re-establishing river reconnection is slowing or contributing to coastal wetland loss. This issue is due to the difficulties in the application of remote sensing in low-relief environments where water level changes could indicate either land loss or simply temporary submergence. …


A New Species Of Chrysina Kirby (Coleoptera: Scarabaeidae: Rutelinae) From The Sierra Madre Occidental Of Mexico, With Notes On The Type Locality Of Chrysina Adelaida (Hope, 1841), David C. Robacker, David C. Hawks, Naidely Castillo, Brianna Miranda Oct 2022

A New Species Of Chrysina Kirby (Coleoptera: Scarabaeidae: Rutelinae) From The Sierra Madre Occidental Of Mexico, With Notes On The Type Locality Of Chrysina Adelaida (Hope, 1841), David C. Robacker, David C. Hawks, Naidely Castillo, Brianna Miranda

Insecta Mundi

This paper presents a taxonomic review of the genus Boreocanthon Halffter, restored generic sta­tus, a group of ball-rolling (telocoprid) dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae) endemic to North America. The genus, heretofore treated as a subgenus of Canthon, comprises 13 species, each keyed, diagnosed, illustrated and presented with information on distribution, relationships, and biology (*signifies restored generic combination): *Boreocanthon ateuchiceps (Bates, 1887); B. coahuilensis (Howden, 1966); *B. depressipennis (LeConte, 1859c); *B. ebenus (Say, 1823); *B. forreri (Bates, 1887); *B. integricollis (Schaef­fer, 1915); *B. lecontei (Harold, 1868); …


Acmaeodera Moesta Dugès, 1891 (Coleoptera: Buprestidae), A Poorly Known Species From Mexico, Richard L. Westcott, Jesus Romero-Napoles Oct 2022

Acmaeodera Moesta Dugès, 1891 (Coleoptera: Buprestidae), A Poorly Known Species From Mexico, Richard L. Westcott, Jesus Romero-Napoles

Insecta Mundi

Two new state records are reported for the Mexican Acmaeodera moesta Dugès (Coleoptera: Bu­prestidae), a lectotype is designated for it, and clarifying discussion is provided.

According to Westcott (2020) there are 152 described valid species of Acmaeodera Eschscholtz in Mexico. Acmaeodera moesta Dugès (Fig. 1–3) was described from the state of Guanajuato, and it has not since been men­tioned in the literature except for listings in catalogs and checklists. Herein we record it from the states of México (MEX) and San Luis Potosí (SLP), designate a lectotype, and provide a detailed discussion.


Lasioglossum (Dialictus) Semicaeruleum (Cockerell, 1895) (Hymenoptera: Halictidae) In Maryland: A Disjunct Population In Eastern North America?, Eugene J. Scarpulla Oct 2022

Lasioglossum (Dialictus) Semicaeruleum (Cockerell, 1895) (Hymenoptera: Halictidae) In Maryland: A Disjunct Population In Eastern North America?, Eugene J. Scarpulla

Insecta Mundi

Since 2004, three specimens of Lasioglossum (Dialictus) semicaeruleum (Cockerell, 1895) (Hyme­noptera: Halictidae) have been collected in Maryland. Other than three specimens from Wisconsin, there are no additional records of this western United States species known east of the Mississippi River. I document the three Maryland records and offer possible scenarios of how the specimens could have arrived in Mary­land.

Lasioglossum (Dialictus) semicaeruleum (Cockerell, 1895) (Hymenoptera: Halictidae) is an abundant western North American species that ranges from the Canadian Prairie Provinces (Alberta, Manitoba, and Saskatchewan) through the United States west of the Mississippi River (Arizona, California, Colorado, …


Genomics Reveals A New Genus And Species From A Single Female Specimen (Lepidoptera: Hesperiidae: Hesperiinae: Hesperiini: Moncina), Ernst Brockmann, Jing Zhang, Qian Cong, Nick V. Grishin Oct 2022

Genomics Reveals A New Genus And Species From A Single Female Specimen (Lepidoptera: Hesperiidae: Hesperiinae: Hesperiini: Moncina), Ernst Brockmann, Jing Zhang, Qian Cong, Nick V. Grishin

Insecta Mundi

New taxa in Hesperiidae (Lepidoptera: Papilionoidea) are traditionally proposed after inspection of male genitalia, which largely form the basis for Hesperiidae taxonomy. However, with genomic DNA se­quencing, even a single female specimen can be placed in a phylogenetic context of existing classification and taxonomically assigned with confidence. Genomic sequencing of an unusually patterned Hesperiidae female from San Martin, Peru, characterized by pearly spots outlining an inverted heart pattern on the rust-colored ventral hindwing, reveals that it represents an undescribed genus and species named here as Gemmia buechei Brockmann and Grishin, new genus and new species.

Neotropical regions are rich …


Taxonomic Review Of The North American Dung Beetle Genus Boreocanthon Halffter, 1958 (Coleoptera: Scarabaeidae: Scarabaeinae: Deltochilini), W. D. Edmonds Oct 2022

Taxonomic Review Of The North American Dung Beetle Genus Boreocanthon Halffter, 1958 (Coleoptera: Scarabaeidae: Scarabaeinae: Deltochilini), W. D. Edmonds

Insecta Mundi

This paper presents a taxonomic review of the genus Boreocanthon Halffter, restored generic sta­tus, a group of ball-rolling (telocoprid) dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae) endemic to North America. The genus, heretofore treated as a subgenus of Canthon, comprises 13 species, each keyed, diagnosed, illustrated and presented with information on distribution, relationships, and biology (*signifies restored generic combination): *Boreocanthon ateuchiceps (Bates, 1887); B. coahuilensis (Howden, 1966); *B. depressipennis (LeConte, 1859c); *B. ebenus (Say, 1823); *B. forreri (Bates, 1887); *B. integricollis (Schaef­fer, 1915); *B. lecontei (Harold, 1868); …


A Nanofiber-Embedded Microfluidic Platform For Studying Neurobiology, Donghee Lee, Navatha Shree Sharma, S. M. Shatil Shahriar, Kai Yang, Zheng Yan, Jingwei Xie Oct 2022

A Nanofiber-Embedded Microfluidic Platform For Studying Neurobiology, Donghee Lee, Navatha Shree Sharma, S. M. Shatil Shahriar, Kai Yang, Zheng Yan, Jingwei Xie

Department of Mechanical and Materials Engineering: Faculty Publications

Due to their biomimetic properties, electrospun nanofibers have been widely used in neurobiology studies. However, mechanistic understanding of cell-nanofiber interactions is challenging based on the current in vitro culture systems due to the lack of control of spatiotemporal patterning of cells and difficulty in monitoring single cell behavior. To overcome these issues, we apply microfluidic technology in combination with electrospun nanofibers for in vitro studies of interactions between neurons and nanofiber materials. We demonstrate a unique nanofiber embedded microfluidic device which contains patterned aligned or random electrospun nanofibers as a new culture system. With this device, we test how different …


Emotional Perspectives On Existential Threat: Evaluating The Rationality Of Climate Anxiety, Rachael Lange Oct 2022

Emotional Perspectives On Existential Threat: Evaluating The Rationality Of Climate Anxiety, Rachael Lange

Honors Program: Senior Projects (Public)

This thesis seeks to answer the following question: Is climate anxiety a rational emotion? In order to arrive at an answer, several queries embedded in the main question must be addressed. This paper will outline a theory of emotion in order to define anxiety, assess climate change as a specific emotional object, and compare the rationality of anxiety using two evaluative standards. Climate anxiety is an emerging emotional phenomenon experienced in response to the perceived detrimental effects of a warming climate. Due to the novel identification of this contemporary emotional phenomenon with the established emotion of anxiety, there has thus …


Bee‑Safe Peptidomimetic Acaricides Achieved By Comparative Genomics, Vikas Jindal, Daqi Li, Leslie Catherine Rault, Soheila Fatehi, Rupinder Singh, Moritz Mating, Ye Zou, Ho‑Leung Ng, Krzysztof Kaczmarek, Janusz Zabrocki, Shunhua Gui, Guy Smagghe, Troy D. Anderson, Ronald J. Nachman, Yoonseong Park Oct 2022

Bee‑Safe Peptidomimetic Acaricides Achieved By Comparative Genomics, Vikas Jindal, Daqi Li, Leslie Catherine Rault, Soheila Fatehi, Rupinder Singh, Moritz Mating, Ye Zou, Ho‑Leung Ng, Krzysztof Kaczmarek, Janusz Zabrocki, Shunhua Gui, Guy Smagghe, Troy D. Anderson, Ronald J. Nachman, Yoonseong Park

Department of Entomology: Faculty Publications

The devastating Varroa mite (Varroa destructor Anderson and Trueman) is an obligatory ectoparasite of the honey bee, contributing to significant colony losses in North America and throughout the world. The limited number of conventional acaricides to reduce Varroa mites and prevent disease in honey bee colonies is challenged with wide-spread resistance and low target-site selectivity. Here, we propose a biorational approach using comparative genomics for the development of honey beesafe and selective acaricides targeting the Varroa mite-specific neuropeptidergic system regulated by proctolin, which is lacking in the honey bee. Proctolin is a highly conserved pentapeptide RYLPT (Arg-Tyr-Leu-Pro-Thr) known to …


Hybrid Timber Concrete Composite Slab For Analysis Of Lag Screw Embedment Connections, Jawad Al Lawati, Ece Erdogmus, Dennis Young, Husam Al Dughaishi, Moad Alosta, Zainab Al-Khafaji, Zaher Mundher Yaseen, Abdalrhman Milad Oct 2022

Hybrid Timber Concrete Composite Slab For Analysis Of Lag Screw Embedment Connections, Jawad Al Lawati, Ece Erdogmus, Dennis Young, Husam Al Dughaishi, Moad Alosta, Zainab Al-Khafaji, Zaher Mundher Yaseen, Abdalrhman Milad

Department of Civil and Environmental Engineering: Faculty Publications

Push-out-shear tests were used in this study to analyze lag screw connections in timber-concrete composite (TCC) slabs based on the embedment depth. The goal of this research is to look into the relationship between shear capacity and embedment depth in TCC, as well as to investigate the embedment strength of the wood. Experiments were carried out at different embedment depths (5.08 cm, 7.0 cm, and 8.9 cm). The prepared samples were examined in order to determine the failure modes and provide an accurate assessment of the influence of embedment depth on TCC slabs. The investigation on the embedment strength of …


The Multiform Genus Psyrassa Pascoe (Coleoptera: Cerambycidae: Elaphidiini): New Species, New Records, Synonyms And Transfers, Kimberly García, Antonio Santos-Silva Oct 2022

The Multiform Genus Psyrassa Pascoe (Coleoptera: Cerambycidae: Elaphidiini): New Species, New Records, Synonyms And Transfers, Kimberly García, Antonio Santos-Silva

Insecta Mundi

This paper presents a taxonomic review of the genus Boreocanthon Halffter, restored generic sta­tus, a group of ball-rolling (telocoprid) dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae) endemic to North America. The genus, heretofore treated as a subgenus of Canthon, comprises 13 species, each keyed, diagnosed, illustrated and presented with information on distribution, relationships, and biology (*signifies restored generic combination): *Boreocanthon ateuchiceps (Bates, 1887); B. coahuilensis (Howden, 1966); *B. depressipennis (LeConte, 1859c); *B. ebenus (Say, 1823); *B. forreri (Bates, 1887); *B. integricollis (Schaef­fer, 1915); *B. lecontei (Harold, 1868); …


The Effects Of Administering Different Metaphylactic Antimicrobials On Growth Performance And Health Outcomes Of High-Risk, Newly Received Feedlot Steers, Carley M. Coppin, Taylor M. Smock, Cory L. Helmuth, Jeff L. Manahan, Nathan S. Long, Ashley A. Hoffman, Jeffery A. Carroll, Paul R. Broadway, Nicole C. Burdick Sanchez, James E. Wells, Samodha C. Fernando, Kristin E. Hales Oct 2022

The Effects Of Administering Different Metaphylactic Antimicrobials On Growth Performance And Health Outcomes Of High-Risk, Newly Received Feedlot Steers, Carley M. Coppin, Taylor M. Smock, Cory L. Helmuth, Jeff L. Manahan, Nathan S. Long, Ashley A. Hoffman, Jeffery A. Carroll, Paul R. Broadway, Nicole C. Burdick Sanchez, James E. Wells, Samodha C. Fernando, Kristin E. Hales

Department of Animal Science: Faculty Publications

Bovine respiratory disease (BRD) is the primary animal health concern facing feedlot producers. Many antimicrobial mitigation strategies are available, but few studies have compared feedlot performance during both the receiving and finishing periods following application of different antimicrobials used as metaphylaxis at arrival. The objective of this study was to compare antimicrobial metaphylaxis methods on clinical health and growth performance across both the receiving and finishing periods. A total of 238 multiple-sourced steers in two source blocks were used in a generalized complete block design. The four treatments included: 1) a negative control, 5 mL of sterile saline injected subcutaneously …


Activity Of The Lactate Dehydrogenase Inhibitor Oxamic Acid Against The Fermentative Bacterium Streptococcus Mitis/Oralis: Bactericidal Effects And Prevention Of Daptomycin Resistance In Vitro And In An Ex Vivo Model, Razieh Kebriaei, Arnold S. Bayer, Christian K. Lapitan, Michael J. Rybak, Greg A. Somerville, Nagendra N. Mishra Oct 2022

Activity Of The Lactate Dehydrogenase Inhibitor Oxamic Acid Against The Fermentative Bacterium Streptococcus Mitis/Oralis: Bactericidal Effects And Prevention Of Daptomycin Resistance In Vitro And In An Ex Vivo Model, Razieh Kebriaei, Arnold S. Bayer, Christian K. Lapitan, Michael J. Rybak, Greg A. Somerville, Nagendra N. Mishra

School of Veterinary and Biomedical Sciences: Faculty Publications

Streptococcus mitis/oralis is a fermentative bacterium that relies on lactate dehydrogenase to balance its redox poise and keep glycolysis active. Metabolomic analysis of an in vitro– derived daptomycin-resistant (DAP-R) S. mitis/oralis strain (351-D10) revealed differences in glucose catabolism relative to its DAP-susceptible (DAP-S) parental strain, 351. Metabolic changes associated with the transition to this DAP-R phenotype suggested that inhibiting glycolysis could alter DAP susceptibility. In addition, the strong reliance of S. mitis/oralis on glycolysis for energy and biosynthetic intermediates suggested that inhibiting glycolysis would adversely affect growth and biomass accumulation. To test these hypotheses, we used the lactate dehydrogenase inhibitor …


Rice Chalky Grain 5 Regulates Natural Variation For Grain Quality Under Heat Stress, Anil Kumar Nalini Chandran, Jaspreet Sandhu, Larissa Irvin, Puneet Paul, Balpreet K. Dhatt, Waseem Hussain, Tian Gao, Paul E. Staswick, Hongfeng Yu, Gota Morota, Harkamal Walia Oct 2022

Rice Chalky Grain 5 Regulates Natural Variation For Grain Quality Under Heat Stress, Anil Kumar Nalini Chandran, Jaspreet Sandhu, Larissa Irvin, Puneet Paul, Balpreet K. Dhatt, Waseem Hussain, Tian Gao, Paul E. Staswick, Hongfeng Yu, Gota Morota, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Heat stress occurring during rice (Oryza sativa) grain development reduces grain quality, which often manifests as increased grain chalkiness. Although the impact of heat stress on grain yield is well-studied, the genetic basis of rice grain quality under heat stress is less explored as quantifying grain quality is less tractable than grain yield. To address this, we used an image-based colorimetric assay (Red, R; and Green, G) for genome-wide association analysis to identify genetic loci underlying the phenotypic variation in rice grains exposed to heat stress. We found the R to G pixel ratio (RG) derived from mature …


Observations On Late Cretaceous Micrampulla (Corethrales, Bacillariophyceae) From The Campbell Plateau (Zealandia), Southwest Pacific Ocean, Kenta Abe, David M. Harwood, Richard W. Jordan Oct 2022

Observations On Late Cretaceous Micrampulla (Corethrales, Bacillariophyceae) From The Campbell Plateau (Zealandia), Southwest Pacific Ocean, Kenta Abe, David M. Harwood, Richard W. Jordan

Department of Earth and Atmospheric Sciences: Faculty Publications

Late Cretaceous (late Campanian) diatom assemblages from the Campbell Plateau (Zealandia), southwest Pacific Ocean, obtained from Deep Sea Drilling Project (DSDP) Leg 29 Site 275, contain well-preserved specimens of two enigmatic diatom species currently assigned to the genus Ktenodiscus; Micrampulla parvula originally described from the Maastrichtian-age Moreno Shale, California, and Pterotheca cretacea from DSDP Site 275. In general, the two species share a number of common features with modern Corethron (domed valves, probable heterovalvate frustules, T-shaped serrated articulated spines, marginal sockets), but differ in the location of the sockets (i.e. vertically at the base of the valve dome and …


Alfalfa Water Productivity And Yield Gaps In The U.S. Central Great Plains, Kaylin P. Fink, Patricio Grassini, Alexandre Rocateli, Leonardo M. Bastos, Jude Kastens, Luke P. Ryan, Xiaomao Lin, Andres Patrignani, Romulo P. Lollato Oct 2022

Alfalfa Water Productivity And Yield Gaps In The U.S. Central Great Plains, Kaylin P. Fink, Patricio Grassini, Alexandre Rocateli, Leonardo M. Bastos, Jude Kastens, Luke P. Ryan, Xiaomao Lin, Andres Patrignani, Romulo P. Lollato

Department of Agronomy and Horticulture: Faculty Publications

Context: Yield gap (Yg) analyses using farmer-reported yield and management data have been performed for a number of annual grain crops, but it lacks for perennial forages. The U.S. accounts for 21 % of the global alfalfa production with a large rainfed area located in the central Great Plains, serving as an interesting case-study for Yg in perennial forages. Most existing alfalfa Yg analyses quantified the magnitude of the Yg but failed to identify associated management practices to reduce it. Challenging this analysis, a systematic benchmark for alfalfa water productivity [WP, kg dry matter per mm evapotranspiration (ETc)] that …


Effect Of Water Stress On Weed Germination, Growth Characteristics, And Seed Production: A Global Meta-Analysis, Mandeep Singh, Resham Thapa, Meetpal Singh Kukal, Suat Irmak, Steven Mirsky, Amit J. Jhala Oct 2022

Effect Of Water Stress On Weed Germination, Growth Characteristics, And Seed Production: A Global Meta-Analysis, Mandeep Singh, Resham Thapa, Meetpal Singh Kukal, Suat Irmak, Steven Mirsky, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

Weeds compete with crops for soil moisture, along with other resources, which can impact the germination, growth, and seed production of weeds; however, this impact has not been systematically recorded and synthesized across diverse studies. To address this knowledge gap, a global meta-analysis was conducted using 1,196 paired observations from 86 published articles assessing the effect of water stress on weed germination, growth characteristics, and seed production. These studies were conducted and published during 1970 through 2020 across four continents (Asia, Australia, Europe, and North America). Imposed water stress was expressed as solution osmotic potential (ψsolution), soil water potential (ψsoil), …


Agronomic And Quality Impact Of A Shortened Translocation For Wheat Streak Mosaic Virus Resistance, Mary J. Guttieri, Robert L. Bowden, Guorong Zhang, Scott Haley, Katherine Anna Frels, Gary L. Hein, Katherine W. Jordan Oct 2022

Agronomic And Quality Impact Of A Shortened Translocation For Wheat Streak Mosaic Virus Resistance, Mary J. Guttieri, Robert L. Bowden, Guorong Zhang, Scott Haley, Katherine Anna Frels, Gary L. Hein, Katherine W. Jordan

Department of Agronomy and Horticulture: Faculty Publications

Wheat streak mosaic virus (WSMV) is a mite-vectored virus with substantial economic impact on wheat production. One of the effective sources of resistance to WSMV, Wsm1, is carried on a translocation from Thinopyrum intermedium. The original whole arm form of this translocation (T4DL·4JsS) was highly effective against WSMV but carried a substantial yield penalty in the absence of the virus. Shorter recombinants of the Th. intermedium translocation are now available. This study characterized the agronomic performance of near-isogenic sib-pair families in 10 yield trials using one of these shortened T4DL·4DS-4JsS translocations, named “rec213,” in the absence …


Taxonomic Discoveries Enabled By Genomic Analysis Of Butterflies, Jing Zhang, Qing Cong, Jinhui Shen, Leina Song, Riley J. Gott, Pierre Boyer, Crispin S. Guppy, Steve Kohler, Gerardo Lamas, Paul A. Opler, Nick V. Grishin Oct 2022

Taxonomic Discoveries Enabled By Genomic Analysis Of Butterflies, Jing Zhang, Qing Cong, Jinhui Shen, Leina Song, Riley J. Gott, Pierre Boyer, Crispin S. Guppy, Steve Kohler, Gerardo Lamas, Paul A. Opler, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

The comparative genomics of butterflies yields additional insights into their phylogeny and classification that are compiled here. As a result, 3 genera, 5 subgenera, 5 species, and 3 subspecies are proposed as new, that is, in Hesperiidae: Antina Grishin, gen. n. (type species Antigonus minor O. Mielke, 1980), Pompe Grishin and Lamas, gen. n. (type species Lerema postpuncta Draudt, 1923), and Curva Grishin, gen. n. (type species Moeris hyagnis Godman, 1900); in Lycaenidae: Fussia Grishin, subgen. n. (type species Polyommatus standfussi Grum-Grshimailo, 1891) and Pava Grishin, subgen. n. (type species Thecla panava Westwood, 1852); in Hesperiidae: Monoca Grishin, subgen. n. …


The Genomic And Bulked Segregant Analysis Of Curcuma Alismatifolia Revealed Its Diverse Bract Pigmentation, Xuezhu Liao, Yuanjun Ye, Xiaoni Zhang, Dan Peng, Mengmeng Hou, Gaofei Fu, Jianjun Tan, Jianli Zhao, Rihong Jiang, Yechun Xu, Jinmei Liu, Jinliang Yang, Wusheng Liu, Luke R. Tembrock, Genfa Zhu, Zhiqiang Wu Oct 2022

The Genomic And Bulked Segregant Analysis Of Curcuma Alismatifolia Revealed Its Diverse Bract Pigmentation, Xuezhu Liao, Yuanjun Ye, Xiaoni Zhang, Dan Peng, Mengmeng Hou, Gaofei Fu, Jianjun Tan, Jianli Zhao, Rihong Jiang, Yechun Xu, Jinmei Liu, Jinliang Yang, Wusheng Liu, Luke R. Tembrock, Genfa Zhu, Zhiqiang Wu

Department of Agronomy and Horticulture: Faculty Publications

Compared with most flowers where the showy part comprises specialized leaves (petals) directly subtending the reproductive structures, most Zingiberaceae species produce showy ‘‘flowers’’ through modifications of leaves (bracts) subtending the true flowers throughout an inflorescence. Curcuma alismatifolia, belonging to the Zingiberaceae family, a plant species originating from Southeast Asia, has become increasingly popular in the flower market worldwide because of its varied and esthetically pleasing bracts produced in different cultivars. Here, we present the chromosome-scale genome assembly of C. alismatifolia ‘‘Chiang Mai Pink’’ and explore the underlying mechanisms of bract pigmentation. Comparative genomic analysis revealed C. alismatifolia contains a …


The Emergence Of Convergence, Shana M. Sundstrom, David G. Angeler, Jessica G. Ernakovich, Jorge H. Garcıá, Joseph A. Hamm, Orville Huntington, Craig R. Allen Oct 2022

The Emergence Of Convergence, Shana M. Sundstrom, David G. Angeler, Jessica G. Ernakovich, Jorge H. Garcıá, Joseph A. Hamm, Orville Huntington, Craig R. Allen

School of Natural Resources: Faculty Publications

Science is increasingly a collaborative pursuit. Although the modern scientific enterprise owes much to individuals working at the core of their field, humanity is increasingly confronted by highly complex problems that require the integration of a variety of disciplinary and methodological expertise. In 2016, the U.S. National Science Foundation launched an initiative prioritizing support for convergence research as a means of “solving vexing research problems, in particular, complex problems focusing on societal needs.” We discuss our understanding of the objectives of convergence research and describe in detail the conditions and processes likely to generate successful convergence research. We use our …


Comparative Analysis Of Untargetedmetabolomics In Tolerant And Sensitive Genotypes Of Common Bean (Phaseolus Vulgaris L.) Seeds Exposed To Terminal Drought Stress, Mayavan Subramani, Carlos Urrea, Venu Kalavacharla Oct 2022

Comparative Analysis Of Untargetedmetabolomics In Tolerant And Sensitive Genotypes Of Common Bean (Phaseolus Vulgaris L.) Seeds Exposed To Terminal Drought Stress, Mayavan Subramani, Carlos Urrea, Venu Kalavacharla

Panhandle Research and Extension Center

Many environmental stresses can affect the accumulation of metabolites in plants, including drought. In the present study, we found a great deal of variability in the seed metabolic profiles of the tolerant (Matterhorn, SB-DT2 and SB-DT3) common bean genotypes in comparison to the sensitive genotypes (Sawtooth, Merlot and Stampede) using ultrahigh performance liquid chromatography􀀀tandem mass spectrometry (UPLC-MS). The genotypes were grown in the field and subjected to drought stress after flowering (terminal drought stress). We aimed to investigate the accumulation of genotype-specific metabolites and related pathways under terminal drought stress by comparing tolerant and sensitive genotypes within a race. A …


Migratory Connectivity Of North American Waterfowl Across Administrative Flyways, Anthony Roberts, Amy L. Scarpignato, Allison Huysman, Jeffrey A. Hostetler, Emily B. Cohen Oct 2022

Migratory Connectivity Of North American Waterfowl Across Administrative Flyways, Anthony Roberts, Amy L. Scarpignato, Allison Huysman, Jeffrey A. Hostetler, Emily B. Cohen

United States Fish and Wildlife Service: Publications

Management of waterfowl that migrate seasonally across North America occurs within four flyways that were delineated in the early 1900s to include the annual movements of populations. Movements may have changed over the past century since the administrative flyways were established, and may do so while management plans are in use, so information about transitions among flyways through time can illustrate how management assumptions may change. Today there are more than 12 million records from 60 years of migratory waterfowl band recoveries to assess adaptive management approaches that will be most effective when they account for movements within and between …


Morphometric And Molecular Characterization Of An Unpigmented Haemosporidian Parasite In The Neotropical Turnip-Tailed Gecko (Thecadactylus Rapicauda), Nubia E. Matta, Leydy P. González, Mario Vargas-Ramírez, Gediminas Valkiūnas, Ananias A. Escalante, M. Andreína Pacheco Oct 2022

Morphometric And Molecular Characterization Of An Unpigmented Haemosporidian Parasite In The Neotropical Turnip-Tailed Gecko (Thecadactylus Rapicauda), Nubia E. Matta, Leydy P. González, Mario Vargas-Ramírez, Gediminas Valkiūnas, Ananias A. Escalante, M. Andreína Pacheco

Harold W. Manter Laboratory of Parasitology: Library Materials

Morphological traits from blood stages have been the gold standard for determining haemosporidian parasite species. However, the status of some taxa and the value of such traits in parasites from reptiles remain contentious. The scarce sampling of these species worsens the situation, and several taxa lack molecular data. A survey was performed in the Magdalena Department in Colombia, where 16 species of reptiles were captured. A peculiar haemosporidian parasite was found in the Turnip-tailed gecko Thecadactylus rapicauda. This haemosporidian does not show malarial pigment in blood stages under light microscopy; thus, it fits the Garnia genus’s characters belonging to …


Employing Respondent Driven Sampling (Rds) To Recruit People Who Inject Drugs (Pwid) And Other Hard-To-Reach Populations During Covid-19: Lessons Learned, Roberto Abadie, Patrick Habecker, Kimberly Gocchi Carrasco, Kathy S. Chiou, Samodha C. Fernando, Sydney Townsend, Aníbal Valentin-Acevedo, Kirk Dombrowski, John T. West, Charles Wood Oct 2022

Employing Respondent Driven Sampling (Rds) To Recruit People Who Inject Drugs (Pwid) And Other Hard-To-Reach Populations During Covid-19: Lessons Learned, Roberto Abadie, Patrick Habecker, Kimberly Gocchi Carrasco, Kathy S. Chiou, Samodha C. Fernando, Sydney Townsend, Aníbal Valentin-Acevedo, Kirk Dombrowski, John T. West, Charles Wood

School of Global Integrative Studies: Faculty Publications

Background: Respondent Driven Sampling (RDS) is an effective sampling strategy to recruit hard-to-reach populations but the impact of the COVID-19 pandemic on the use of this strategy in the collection of data involving human subjects, particularly among marginalized and vulnerable populations, is not known. Based on an ongoing study using RDS to recruit and study the interactions between HIV infection, injection drug use, and the microbiome in Puerto Rico, this paper explores the e􀀀ectiveness of RDS during the pandemic and provided potential strategies that could improve recruitment and data collection.

Results: RDS was employed to evaluate its effectiveness …


Level And Pattern Of Overstory Retention Shape The Abundance And Long-Term Dynamics Of Natural And Created Snags, Charles B. Halpern, Allison K. Rossman, Joan C. Hagar Oct 2022

Level And Pattern Of Overstory Retention Shape The Abundance And Long-Term Dynamics Of Natural And Created Snags, Charles B. Halpern, Allison K. Rossman, Joan C. Hagar

United States Geological Survey: Staff Publications

Standing dead trees, or snags, serve myriad functions in natural forests, but are often scarce in forests managed for timber production. Variable retention (VR), the retention of live and dead trees through harvest, has been adopted globally as a less intensive form of regeneration harvest. In this study, we explore how two key elements of VR systems — level (amount) and spatial pattern of live-tree retention — affect the carryover and post-harvest dynamics of natural and artificially created snags. We present nearly two decades of data from the DEMO Study, a regional-scale experiment in VR harvests of Douglas-fir-dominated forests in …


Preface For Millard Beatty, E. Baesu, Roger Fosdick Oct 2022

Preface For Millard Beatty, E. Baesu, Roger Fosdick

Department of Mechanical and Materials Engineering: Faculty Publications

Professor Beatty has contributed a wide variety of research papers and book articles on topics in finite elasticity, continuum mechanics and classical mechanics, including some fundamental experimental work. His works are clear and informative and expose a didactic quality. In the following, we briefly touch upon some of the highlights of his research involvement throughout the years.


Nefdc Conference Program, Fall 2022, New England Faculty Development Consortium Oct 2022

Nefdc Conference Program, Fall 2022, New England Faculty Development Consortium

New England Faculty Development Consortium Conference Programs

New England Faculty Development Consortium Conference Program, Fall 2022

Theme: Authentic Learning: Developing Students as Independent Thinkers

Friday, October 21, 2022 Hogan Center, College of the Holy Cross Worcester, Massachusetts

Conference Chairs: Eric Matte, Landmark College and Jackie Boivin, Bridgewater State University

Conference Proposal Chairs: Kellie Deys, Nichols College and Kim Burns, Dr. Kim Burns Coaching and Consulting

Keynote Speaker: Dr. José Antonio Bowen, Teaching Change with the New 3Rs

Upcoming NEFDC Opportunities: Spring 2023 Virtual Brown Bag Workshop Series and the Exchange Call for Submissions

Conference At-a-Glance

Open Mic

Poster Descriptions

Concurrent Session 1 – 55 Min. Interactive Session …