Digital Commons Network^™

Ultrafast Electron Diffraction: Visualizing Dynamic States Of Matter, D. Filippetto, P. Musumeci, R. K. Li, B. J. Siwick, M. R. Otto, Martin Centurion, J. P. F. Nunes

Department of Physics and Astronomy: Faculty Publications

Since the discovery of electron-wave duality, electron scattering instrumentation has developed into a powerful array of techniques for revealing the atomic structure of matter. Beyond detecting local lattice variations in equilibrium structures with the highest possible spatial resolution, recent research efforts have been directed toward the long-sought-after dream of visualizing the dynamic evolution of matter in real time. The atomic behavior at ultrafast timescales carries critical information on phase transition and chemical reaction dynamics, the coupling of electronic and nuclear degrees of freedom in materials and molecules, and the correlation among structure, function, and previously hidden metastable or nonequilibrium states …

Social Networks And Instructional Reform In Stem: The Teaching‑Research Nexus, John Skvoretz, Katherine Kappelman, Ariel Marcy, Jacob D. Mcalpin, Jennifer E. Lewis, John P. Ziker, Karl Mertens, Brittnee Earl, Susan E. Shadle, Brian A. Couch, Stephanie Feola, Luanna B. Prevost, A. Kelly Lane, Blake Whitt, Marilyne Stains

School of Biological Sciences: Faculty Publications

Instructional reform in STEM aims for the widespread adoption of evidence based instructional practices (EBIPS), practices that implement active learning. Research recognizes that faculty social networks regarding discussion or advice about teaching may matter to such efforts. But teaching is not the only priority for university faculty – meeting research expectations is at least as important and, often, more consequential for tenure and promotion decisions. We see value in understanding how research networks, based on discussion and advice about research matters, relate to teaching networks to see if and how such networks could advance instructional reform efforts. Our research examines …

Comparative Study Of Differentiating Human Pluripotent Stem Cells Into Vascular Smooth Muscle Cells In Hydrogel-Based Culture Methods, Qing Liu, Zhen Liu, Hongyu Gu, Yuxia Ge, Xuesheng Wu, Fuxing Zuo, Qian Du, Yuguo Lei, Zhanqi Wang, Haishuang Lin

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Vascular smooth muscle cells (VSMCs), which provides structural integrity and regulates the diameter of vasculature, are of great potential for modeling vascular-associated diseases and tissue engineering. Here, we presented a detailed comparison of differentiating human pluripotent stem cells (hPSCs) into VSMCs (hPSCs-VSMCs) in four different culture methods, including 2-dimensional (2D) culture, 3-dimensional (3D) PNIPAAm-PEG hydrogel culture, 3-dimensional (3D) alginate hydrogel culture, and transferring 3- dimensional alginate hydrogel culture to 2-dimensional (2D) culture. Both hydrogel-based culture methods could mimic in vivo microenvironment to protect cells from shear force, and avoid cells agglomeration, resulting in the extremely high culture efficiency (e.g., high …

Poisson Hurdle Model-Based Method For Clustering Microbiome Features, Zhili Qiao, Elle Barnes, Susannah Tringe, Daniel P. Schachtman, Peng Liu

Department of Agronomy and Horticulture: Faculty Publications

Motivation: High-throughput sequencing technologies have greatly facilitated microbiome research and have generated a large volume of microbiome data with the potential to answer key questions regarding microbiome assembly, structure and function. Cluster analysis aims to group features that behave similarly across treatments, and such grouping helps to highlight the functional relationships among features and may provide biological insights into microbiome networks. However, clustering microbiome data are challenging due to the sparsity and high dimensionality.

Results: We propose a model-based clustering method based on Poisson hurdle models for sparse microbiome count data. We describe an expectation–maximization algorithm and a …

Exposure Of Egyptian Rousette Bats (Rousettus Aegyptiacus) And A Little Free-Tailed Bat (Chaerephon Pumilus) To Alphaviruses In Uganda, Rebekah C. Kading, Erin M. Borland, Eric C. Mossel, Teddy Nakayiki, Betty Nalikka, Jeremy P. Ledermann, Mary B. Crabtree, Nicholas A. Panella, Luke Nyakarahuka, Amy T. Gilbert, Julian C. Kerbis-Peterhans, Jonathan S. Towner, Brian R. Amman, Tara K. Sealy, Barry R. Miller, Julius J. Lutwama, Robert M. Kityo, Ann M. Powers

United States Department of Agriculture Wildlife Services: Staff Publications

The reservoir for zoonotic o’nyong-nyong virus (ONNV) has remained unknown since this virus was first recognized in Uganda in 1959. Building on existing evidence for mosquito bloodfeeding on various frugivorous bat species in Uganda, and seroprevalence for arboviruses among bats in Uganda, we sought to assess if serum samples collected from bats in Uganda demonstrated evidence of exposure to ONNV or the closely related zoonotic chikungunya virus (CHIKV). In total, 652 serum samples collected from six bat species were tested by plaque reduction neutralization test (PRNT) for neutralizing antibodies against ONNV and CHIKV. Forty out of 303 (13.2%) Egyptian rousettes …

Demographic Groups Differ In Urban Recreational Behavior, Brandon Barlow

School of Natural Resources: Dissertations, Theses, and Student Research

Urban recreational behavior is an essential component to understanding both how our recreational opportunities will be utilized and how they can be further improved. By improving recreational opportunities, we can ensure safe and reliable emotional and physical outlets for users. As urban areas continue to expand both in geographic area and in population size, urban recreational opportunities will also see growth in the number of recreational users. Demographics provide the opportunity to further understand and predict recreational behavior, producing a variety of decision management tools. Our goal was to understand differences in urban recreational behavior among demographic groups. To address …

On The Firefly (Coleoptera: Lampyridae) Species Of Carl Linnaeus, Oliver Keller

Insecta Mundi

The firefly species described by Carl Linnaeus in 1758 and 1767 (Coleoptera: Lampyridae) were checked to determine the actual dates of publication. Nine out of twelve species were originally described in 1758 and not in 1767 as published in the majority of firefly literature. Lampyris hespera Linnaeus, 1767 as a junior synonym of Aspisoma lampyris (Linnaeus, 1758) is established.

Se revisaron las especies de luciérnagas descritas por Carl Linnaeus in 1758 y 1767 (Coleoptera: Lampyridae) para la determinación de fechas de publicación. Nueve de las doce especies fueron originalmente descritas en 1758 y no en 1767 como aparece publicado en …

New Distributional Records For Mexican Cleridae (Coleoptera) With The Description Of Three New Species, Jacques Rifkind

Insecta Mundi

New state records for 32 species of Mexican Cleridae (Coleoptera) are presented. In addition, 10 species of Cleridae are reported for Mexico for the first time (new country records). Cymatodera bezarki new species and Enoclerus sepultura new species are described from Chiapas, Mexico. Enoclerus primulus new species is described from Chiapas, Mexico and El Salvador.

Approximately 550 species of Cleridae are known from Mexico. These are divided among approximately 63 gen­era, of which the most speciose are Cymatodera Gray (ca. 110 species), Enoclerus Gahan (ca. 105 species) and Phyllobaenus Dejean (ca. 40 species). Faunistic studies are limited to Vaurie’s (1952) …

Antimicrobial Efficacy Of A Citric Acid/Hydrochloric Acid Blend, Peroxyacetic Acid, And Sulfuric Acid Against Salmonella On Inoculated Non-Conventional Raw Chicken Products, Emma Nakimera

Department of Food Science and Technology: Dissertations, Theses, and Student Research

The utilization of non-conventional chicken parts as human food varies widely across countries. The high prevalence of Salmonella, especially in the giblets, poses a high risk to public health. Poultry processors have implemented multiple hurdle technology to reduce this gram-negative pathogen in chicken parts. This study was conducted to evaluate the antimicrobial efficacy of a commercial blend of citric acid/ hydrochloric acid (CP), peroxyacetic acid (PAA), and sulfuric acid (SA) in reducing Salmonella inoculated on two chicken giblets: livers and hearts. Chicken hearts and livers were inoculated (6 log CFU/ml of rinsate) by individually immersing them in a cocktail …

Sturgeon Chub Distributional Patterns And Habitat Use And Benthic Fish Assemblage Structure In Missouri River Tributaries Of South Dakota, Mitchell R. Magruder

School of Natural Resources: Dissertations, Theses, and Student Research

Native species of the Missouri River drainage inhabiting benthic habitats dominate state and federal lists of species at risk. Sicklefin Chub Macrhybopsis meeki and Sturgeon Chub Macrhybopsis gelida are two native Missouri River benthic minnows that are currently under review for federal listing under the Endangered Species Act (ESA) due to extensive population declines and local extirpations within their native range. Substantial alterations to the Missouri River threaten Macrhybopsis spp. and other benthic fishes; however, large, less impacted tributaries in South Dakota may act as refugia for native species. The extent of Sicklefin Chub and Sturgeon Chub populations is largely …

An Empirical Study On The Classification Of Python Language Features Using Eye-Tracking, Jigyasa Chauhan

School of Computing: Dissertations, Theses, and Student Research

Python, currently one of the most popular programming languages, is an object-
oriented language that also provides language feature support for other programming
paradigms, such as functional and procedural. It is not currently understood how
support for multiple paradigms affects the ability of developers to comprehend that
code. Understanding the predominant paradigm in code, and how developers classify
the predominant paradigm, can benefit future research in program comprehension as
the paradigm may factor into how people comprehend that code. Other researchers
may want to look at how the paradigms in the code interact with various code smells.
To investigate how …

Semantic Segmentation Based Deep Learning Approaches For Weed Detection, Puranjit Singh

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Global increase in herbicide use to control weeds has led to issues such as evolution of herbicide-resistant weeds, off-target herbicide movement, etc. Precision agriculture advocates Site Specific Weed Management (SSWM) application to achieve precise and right amount of herbicide spray and reduce off-target herbicide movement. Recent advancements in Deep Learning (DL) have opened possibilities for adaptive and accurate weed recognitions for field based SSWM applications with traditional and emerging spraying equipment; however, challenges exist in identifying the DL model structure and train the model appropriately for accurate and rapid model applications over varying crop/weed growth stages and environment. In our …

Descriptive Dna Barcoding Of Argas (Persicargas) Arboreus And Argas (Persicargas) Persicus Ticks (Ixodida: Argasidae) Infesting Birds In Egypt, Enas H. Ghallab, Ayat Yousery, Mona G. Shaalan

Harold W. Manter Laboratory of Parasitology: Library Materials

Argas ticks are primary parasites of birds with veterinary importance. Nevertheless, these ticks have received little attention regarding molecular identification studies. DNA barcoding is a powerful technique for identifying tick species besides traditional morphological identification. The present work is a first effort to divulge DNA sequences of Argas (Persicargas) arboreus from Egypt and worldwide. We used cytochrome c oxidase subunit I (COI) from A. arboreus infesting herons, and from the fowl tick Argas (Persicargas) persicus. Our results pointed out another success for the Folmer primers that are widely used in DNA barcoding, permitting the discrimination …

Utilization Of Gis In Tracking Disinterment And Movement Of Unknown Us Wwii War Dead: Foundations For A Geospatial Approach To Addressing Commingled Remains, Ella Axelrod

Department of Anthropology: Theses and Student Research

In the aftermath of World War II, the US was faced with the monumental task of finding and identifying over 405,000 service members who did not survive the conflict (McDermott, 2005, p. 1). Of these 405,000, 81,000 remain missing and 2,498 remain unidentified in cemeteries across Europe alone (American Battle Monuments Commission, 2022). Often, these individuals were interred and disinterred multiple times, crossing the continent in the journey from loss incident or battlefield to their final resting place. Commingling, the accidental mixing of remains, is an ever-present concern in the forensic identification of individuals from mass casualty incidents (Belcher et …

Vegetation Type Is An Important Predictor Of The Arctic Summer Land Surface Energy Budget, Jacqueline Oehri, Gabriela Schaepman-Strub, Jin Soo Kim, Raleigh Grysko, Heather Kropp, Inge Grünberg, Vitalii Zemlianskii, Oliver Sonnentag, Eugénie S. Euskirchen, Merin Reji Chacko, Giovanni Muscari, Peter D. Blanken, Joshua F. Dean, Alcide Di Sarra, Richard J. Harding, Ireneusz Sobota, Lars Kutzbach, Elena Plekhanova, Aku Riihelä, Julia Boike, Nathaniel B. Miller, Jason Beringer, Efrén López-Blanco, Paul C. Stoy, Ryan C. Sullivan, Marek Kejna, Frans Jan W. Parmentier, John A. Gamon, Mikhail Mastepanov, Christian Wille, Marcin Jackowicz-Korczynski, Dirk N. Karger, William L. Quinton, Jaakko Putkonen, Dirk Van As, Torben R. Christensen, Maria Z. Hakuba, Robert S. Stone, Stefan Metzger, Baptiste Vandecrux

School of Natural Resources: Faculty Publications

Despite the importance of high-latitude surface energy budgets (SEBs) for land-climate interactions in the rapidly changing Arctic, uncertainties in their prediction persist. Here, we harmonize SEB observations across a network of vegetated and glaciated sites at circumpolar scale (1994–2021). Our variance-partitioning analysis identifies vegetation type as an important predictor for SEB-components during Arctic summer (June-August), compared to other SEB-drivers including climate, latitude and permafrost characteristics. Differences among vegetation types can be of similar magnitude as between vegetation and glacier surfaces and are especially high for summer sensible and latent heat fluxes. The timing of SEB-flux summer-regimes (when daily mean values …

Earlier Snowmelt May Lead To Late Season Declines In Plant Productivity And Carbon Sequestration In Arctic Tundra Ecosystems, Donatella Zona, Peter M. Lafleur, Koen Hufkens, Barbara Bailey, Beniamino Gioli, George Burba, Jordan P. Goodrich, Anna K. Liljedahl, Eugénie S. Euskirchen, Jennifer D. Watts, Mary Farina, John S. Kimball, Martin Heimann, Mathias Göckede, Martijn Pallandt, Torben R. Christensen, Mikhail Mastepanov, Efrén López-Blanco, Marcin Jackowicz-Korczynski, Albertus J. Dolman, Luca Belelli Marchesini, Roisin Commane, Steven C. Wofsy, Charles E. Miller, David A. Lipson, Josh Hashemi, Kyle A. Arndt, Lars Kutzbach, David Holl, Julia Boike, Christian Wille, Torsten Sachs, Aram Kalhori, Xia Song

Daugherty Water for Food Global Institute: Faculty Publications

Arctic warming is affecting snow cover and soil hydrology, with consequences for carbon sequestration in tundra ecosystems. The scarcity of observations in the Arctic has limited our understanding of the impact of covarying environmental drivers on the carbon balance of tundra ecosystems. In this study, we address some of these uncertainties through a novel record of 119 site-years of summer data from eddy covariance towers representing dominant tundra vegetation types located on continuous permafrost in the Arctic. Here we found that earlier snowmelt was associated with more tundra net CO2 sequestration and higher gross primary productivity (GPP) only in June …

Geographic Distribution: Anolis Sagrei (Brown Anole). Usa: Arizona., Addie Leimroth, Louis A. Somma, Dyrana N. Russell, Logan P. Cutts, Mason Ryan, Randall D. Babb, Karen E. Hajek, Andrew T. Holycross

Papers in Herpetology

We discovered the first distributional records for the exotic, Caribbean lizard, Anolis sagrei (Brown Anole), in Arizona.

Interdisciplinary Design Studio: Programming Document Visioning For A Robotic Demonstration, Research, And Engagement Dairy, Steve(N) Hardy, Nate Bicak, Sarah Alduaylij, Noor Al-Maamari, Devyn Beekman, Kelsey Belgum, Lauren Chubb, Nicholas Forte, Mitchell Hill, Joshua Holstein, Dylan Lambe, Phuong Le, Mia Leriger, Elizabeth Loftus, Josh Lorenzen, Megan Lovci, Alex Martino, Zade Miller, Hannah Morgan, Annabelle Nichols, Collin Shearman, Rebecca Sowl, Nalin Theplikhith, Angela Vu, Shaylee Wagner, Ethan Watermeier, Trever Zelenka

Architecture Program: Student Creative Activity

The 2022 COLLABORATE Design Studio brought together students from various disciplines to address a complex, real-world project which required collaborative input from different perspectives. The studio worked to advance the co-creation of knowledge between external stakeholders, students, and instructors. The course was co-taught by faculty from different disciplines, and areas of expertise. During the semester, Nate Bicak and Steven Hardy worked with students from Architecture and Interior Design in collaboration with students in Dr. Tami Brown-Brandl’s students in Biological Systems Engineering and Animal Science to explore the values, spatial qualities, and area requirements of a Robotic Demonstration, Research, and Engagement …

Wics Conference 2022: Water And Integrated Cropping Systems: Driving Research, Teaching, And Extension Impact --Slide Presentation, Wics Conference

Water and Integrated Cropping Systems Conferences

What conference attendees had to say:

"The teaching overview and panel discussion provided many insights on how education pathways are evolving and the need to create diverse opportunities to meet dynamic needs."

"The extension component was valuable in seeing how those doing research can collaborate with and assist extension educators to make a greater impact in the state."

"It was good to learn what relevant research is being conducted and also the work being done in teaching in regards to water and cropping systems."

It was a great first WICS Conference. The discussions have only just begun.

Nuclear Energy, Evan Detina

Op-Eds from ENSC230 Energy and the Environment: Economics and Policies

The use of nuclear power as a primary energy source is a controversial discussion. However, if reversing or stopping the effects of climate change is our main goal, then this is a top contender. Fossil fuels account for 34 billion tons of emissions annually according to Ritchie, Hannah, et al. (2020). Instead, we can create energy through nuclear fission. I believe nuclear energy should become a much larger player in the energy game.

The first practical use of nuclear power became apparent on December 2, 1942 when a physicist, Enrico Fermi, develOp-ed a self-sustaining nuclear fission reaction at the University …

Schramm Park Fall Field Days, Janis Paseka

Nebraska Bird Review

The 2022 NOU Fall Field Days were held at Schramm Park State Recreation Area, south of Gretna in Sarpy County, on September 21-23, with approximately 60 in attendance. The meeting had been scheduled and cancelled twice in the two previous years due to coronavirus concerns. The total species count was 119, including a Sandhill Crane, Prairie Falcon (early for away from breeding area), Winter Wren, and early Snow Bunting. A Limpkin, which had been found in late June at Wehrspann Wetlands mitigation pond in Sarpy County and was still seen through late November in the Wehrspann Lake area, was not …

The Nebraska Bird Review, Index To Volume 90

Nebraska Bird Review

From: Abbott, Sydney 56

To: Zonotrichia leucophrys oriantha 66, 146

The Nebraska Bird Review Volume 90 December 2022 Number 4

Nebraska Bird Review

Fall Field Report, August - November 2022 by W. Ross Silcock ...126

Remembering Clem Klaphake by Don Paseka ...151

Schramm Park Fall Field Days, Sept. 21-23, 2022 ... 154

Index to Volume 90 ...159

Subscription and Organization Information …175

Remembering Clem Klaphake, Don Paseka

Nebraska Bird Review

Clement (Clem) Klaphake passed away on December 30, 2022, from complications of Parkinson’s disease, which he struggled with for several years. He was born in Melrose, Minnesota, in 1943 and grew up working on his parents’ dairy farm, which included the usual menagerie of other farm animals typical of that time. Perhaps it was the routine of milking twice a day, seven days a week, or the impressive scar on his leg from a boar tusk, but Clem was destined to leave the farm and become a life-long educator. ... After getting his degree in 1971, Clem was hired to …

A Glass Bead Semi-Hydroponic System For Intact Maize Root Exudate Analysis And Phenotyping, Martha G. Lopez-Guerrero, Peng Wang, Felicia Phares, Daniel P. Schachtman, Sophie Alvarez, Karin V. Van Dijk

Department of Agronomy and Horticulture: Faculty Publications

Background: Although there have been numerous studies describing plant growth systems for root exudate collection, a common limitation is that these systems require disruption of the plant root system to facilitate exudate collection. Here, we present a newly designed semi-hydroponic system that uses glass beads as solid support to simulate soil impedance, which combined with drip irrigation, facilitates growth of healthy maize plants, collection and analysis of root exudates, and phenotyping of the roots with minimal growth disturbance or root damage. Results: This system was used to collect root exudates from seven maize genotypes using water or 1 mM CaCl2, …

Urban Wildlife Management Planning Process And Conflict Mitigation: A Case Study Of Denver’S Canada Goose Management Plan, Brent Johannes

Community and Regional Planning Program: Theses

In 2019 and 2020, the USDA in coordination with Denver Parks and Recreation removed 2,174 geese from 6 different parks within the City of Denver. The removals and use of lethal methods to manage the concerns related to the geese population in Denver’s parks caused a public conflict and resulted in multiple legal challenges with the City of Denver. The opposition group claimed that the city did not sufficiently engage with the public in the formation of the goose management plan, and did not provide any public notification about the plan to remove geese. City officials have claimed that attempts …

Timing Of Implants Use In Backgrounding System, Kylie M. Butterfield

Applied Science Program: Theses

A study was conducted over two years to determine the interactions of winter rate of gain at a high gain (HG) of 0.91 kg and low gain (LG) 0.45 kg, and implant strategy in the backgrounding and subsequent effects in the finishing phases. There were three phases in this study, the winter phase (~148 days), the summer phase (~60 days) and the finishing phase (~120 days). This was a 2 x 3 factorial design. The first factor is a rate of gain at either 0.91 kg (HG) or 0.45 kg (LG). The next factor is the timing of implant where …

A Multiple Case Study To Understand How Students Experience Science And Engineering Practices, Chris Schaben, Justin Andersson, Christine Cutucache

Department of Educational Psychology: Faculty Publications

The Next Generation Science Standards (NGSS), amid recent shifts in science curriculum, call for students to learn science through the practices of scientists and engineers (science and engineering practices, or SEPs). SEPs, related to inquiry learning, are ways students learn science content by doing science. Students have varied experiences learning science and engineering practices, including exposure in the classroom, from media, and in science fairs. Using a qualitative, multiple case study design, we analyzed public school educators’ and middle and high school students’ (ages 12–18) interview transcripts about learning through the science and engineering practices. Findings demonstrate that students learn …

Increased Bundle-Sheath Leakiness Of Co2 During Photosynthetic Induction Shows A Lack Of Coordination Between The C4 And C3 Cycles, Yu Wang, Samantha S. Stutz, Carl J. Bernacchi, Ryan A. Boyd, Donald R. Ort, Stephen P. Long

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Use of a complete dynamic model of NADP-malic enzyme C4 photosynthesis indicated that, during transitions from dark or shade to high light, induction of the C4 pathway was more rapid than that of C3, resulting in a predicted transient increase in bundle-sheath CO2 leakiness (ϕ). Previously, ϕ has been measured at steady state; here we developed a new method, coupling a tunable diode laser absorption spectroscope with a gas-exchange system to track ϕ in sorghum and maize through the nonsteady-state condition of photosynthetic induction. In both species, ϕ showed a transient increase to > 0.35 before declining to a steady state …

Timber Talk, Vol. 60, No. 4, December 2022

Timber Talk: Nebraska Forest Industry Newsletter

Lumber market reports

Hardwood lumber prices

U.S. Biochar Initiative webinar highlighting NRCS Soil Carbon Program

Marketing Your Timber, a new NFS publication

Timber sales

The Trading Post

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