Digital Commons Network^™

Eco-Dystopian Novels Written By Women: Second, Third, And Fourth Wave Feminism, Trystyn Cox

Department of Environmental Studies: Undergraduate Student Theses

The project is thematic; analysis of eco-dystopian novels written by American female authors in the 20th and 21st centuries in order to determine if the different waves of feminism experienced in the United States had any influence over the books. By doing an analysis of eco-dystopian novels the study identifies if there were any outside societal movements or issues going on at the time that may have influenced how the book was created or if a particular book was able to open innovative ideas to the society at the time it was published. I researched the second, third, and fourth …

Nitrification Inhibitor, Nitrogen Source, And Herbicide Effects On Soil Nitrogen Transformations And Corn Yield, William Neels

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Nitrogen fertilizer management continue to be challenging due to potential nitrogen losses under variable weather conditions. The objective of this was to evaluate the performance of nitrification inhibitors, nitrogen sources and herbicides on in-season nitrogen availability and agronomy indicators. A two site-year field experiment was conducted in silty clay loam soil in corn phase of the corn-soybean rotation at Central Nebraska. The treatments included three herbicide (no pre-emergence, Acuron, Resicore) and five nitrogen treatments: 1) control, 2) anhydrous ammonia, 3) anhydrous ammonia without nitrification inhibitor, 4) urea with nitrification inhibitors, and 5) urea without nitrification inhibitors. Results indicated that nitrogen …

Addressing Challenges Of Dryland Production Of Sunflowers And Corn In The Semi-Arid High Plains Of Nebraska, Zhan Orazov

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Corn and sunflower are value crops for America. Cultivation of corn and sunflower often vary depending on growing environment. Selecting appropriate planting dates, hybrids and plant density frequently concerns farmers. This concern is understandable because the decision made directly impacts final income. The objectives were to evaluate interaction of corn and sunflower planting dates and hybrid maturity and evaluate interaction of corn flex hybrids and plant density under conditions of western Nebraska. Nine corn hybrids with relative maturity ranging from 86 to 105 days were sown between early May and late June in first and between late April and early …

Deciphering The Genetic Architecture Of Key Female Floral Traits For Hybrid Wheat Seed Production, Juan David Jimenez

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Wheat (Triticum aestivum L.) is a staple cereal that provides 20% of the calories and proteins in human intake (Ray et al., 2013). Global population is projected to increase to 9.7 billion by 2050. Food production must increase by 70% to feed this future population. Wheat production is in crisis due to political and environmental challenges and is projected to decline by 0.8% in 2022 (FAO, 2022). To ensure food security yield genetic gain must increase by around 1.4% annually. Taking advantage of heterosis, hybrid wheat has the potential to boost grain yield. However, hybrid wheat seed production systems …

Food Security & Urban Agriculture - Considerations For Soil Improvements And Crop Planning, Aaron Sedivy

Doctor of Plant Health Program: Dissertations and Student Research

Urban agriculture provides many benefits, such as energy conservation, rainwater remediation, increased aesthetic and property value, and therapeutic use for physical, cognitive, and emotional wellbeing. Urban agriculture can also provide critical integrity to each pillar of food security: availability, access, utilization, and stability. As urban agricultural activities increase, social interactions will follow in concert. This will provide opportunities for building trust through the two-way communication of contrasting perspectives, cultures, and beliefs using impartial narratives. Growers can use knowledge and understanding gained from these positive social interactions to formulate their personal paradigms for practice and better meet the needs of each …

Evaluating The Efficacy Of Germination And Fermentation In Producing Biologically Active Peptides From Pulses, Ashley Newton

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Recently, there has been a profound increase in demand of plant-based proteins, especially pulse proteins. However, pulses contain high concentrations of antinutritional factors that hinder the digestibility of proteins. Processing techniques such as enzymatic hydrolysis, microbial fermentation, and physical processing modulate nutritional quality and functionality of pulses. Processing also releases peptides from parent proteins that exhibit health-beneficial bioactivity against various disease risk factors. In this study, germination, gastrointestinal digestion, and microbial fermentation were evaluated to determine the nutritional quality and release of bioactive peptides during and after processing.

Germination of chickpeas (Cicer arietinum L.) modulated the protein profile, and …

The North Platte River Valley: The Intersectionality Between Water Quality And People, Anni Poetzl

School of Natural Resources: Dissertations, Theses, and Student Research

The North Platte River (NPR) Valley of western Nebraska is a semi-arid watershed with row crop production, livestock production, and urban land use activity and has a population of diverse stakeholders. These land use activities contribute to the enrichment of surface waters, such as streams, which can affect human and ecosystem health, as well as economic development and recreational activities. The project objectives are to: (1) quantify the movement of dissolved inorganic nutrients from the land within the NPR Valley to the NPR via tributaries and canals, (2) identify spatiotemporal variability of nutrient limitation of periphyton growth within the NPR, …

Comparative Genomics Of Five Valsa Species Gives Insights On Their Pathogenicity Evolution, Guangchao Sun, Shichang Xie, Lin Tang, Chao Zhao, Mian Zhang, Lili Huang

Department of Agronomy and Horticulture: Faculty Publications

Valsa is a genus of ascomycetes within the Valsaceae family. This family includes many wood destructive pathogens such as the well known Valsa mali and Valsa pyri which cause canker diseases in fruit trees and threaten the global fruit production. Lack of genomic information of this family is impeding our understandings about their evolution and genetic basis of their pathogenicity divergence. Here, we report genome assemblies of Valsa malicola, Valsa persoonii, and Valsa sordida which represent close relatives of Valsa mali and Valsa pyri with different host preferences. Comparative genomics analysis revealed that segmental rearrangements, inversions, and translocations …

Low Power Multi-Channel Interface For Charge Based Tactile Sensors, Samuel Hansen

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Analog front end electronics are designed in 65 nm CMOS technology to process charge pulses arriving from a tactile sensor array. This is accomplished through the use of charge sensitive amplifiers and discrete time filters with tunable clock signals located in each of the analog front ends. Sensors were emulated using Gaussian pulses during simulation. The digital side of the system uses SAR (successive approximation register) ADCs for sampling of the processed sensor signals.

Adviser: Sina Balkır

Learnfca: A Fuzzy Fca And Probability Based Approach For Learning And Classification, Suraj Ketan Samal

School of Computing: Dissertations, Theses, and Student Research

Formal concept analysis(FCA) is a mathematical theory based on lattice and order theory used for data analysis and knowledge representation. Over the past several years, many of its extensions have been proposed and applied in several domains including data mining, machine learning, knowledge management, semantic web, software development, chemistry ,biology, medicine, data analytics, biology and ontology engineering.

This thesis reviews the state-of-the-art of theory of Formal Concept Analysis(FCA) and its various extensions that have been developed and well-studied in the past several years. We discuss their historical roots, reproduce the original definitions and derivations with illustrative examples. Further, we provide …

Sequence-Based Bioinformatics Approaches To Predict Virus–Host Relationships In Archaea And Eukaryotes, Yingshan Li

School of Computing: Dissertations, Theses, and Student Research

Viral metagenomics is independent of lab culturing and capable of investigating viromes of virtually any given environmental niches. While numerous sequences of viral genomes have been assembled from metagenomic studies over the past years, the natural hosts for the majority of these viral contigs have not been determined. Different computational approaches have been developed to predict hosts of bacteria phages. Nevertheless, little progress has been made in the virus-host prediction, especially for viruses that infect eukaryotes and archaea. In this study, by analyzing all documented viruses with known eukaryotic and archaeal hosts, we assessed the predictive power of four computational …

Immobilized Algae For Produced Water Treatment And Desalination, Shibin Nadersha, Ashraf Aly Hassan

Department of Civil and Environmental Engineering: Faculty Publications

Produced water (PW) is the effluent generated during oil mining and extraction. On average, for every barrel of oil, 4-5 barrels of PW are generated worldwide. The presence of various contaminants in PW makes it toxic. Disposal of untreated PW into oceans and water bodies can cause adverse effects on human health and the environment. Taking into account the large volumes of it being generated, and its effects on the environment, proper treatment is required before reuse or disposal. Microalgal treatment is an effective method for the bioremediation and biodesalination of produced water when acclimatized algal biomass is used for …

Comparative Genome Analysis Of Plant Ascomycete Fungal Pathogens With Different Lifestyles Reveals Distinctive Virulence Strategies, Yansu Wang, Jie Wu, Jiacheng Yan, Ming Guo, Lei Xu, Liping Hou, Quan Zou

Department of Agronomy and Horticulture: Faculty Publications

Background: Pathogens have evolved diverse lifestyles and adopted pivotal new roles in both natural ecosystems and human environments. However, the molecular mechanisms underlying their adaptation to new lifestyles are obscure. Comparative genomics was adopted to determine distinct strategies of plant ascomycete fungal pathogens with different lifestyles and to elucidate their distinctive virulence strategies. Results: We found that plant ascomycete biotrophs exhibited lower gene gain and loss events and loss of CAZyme-encoding genes involved in plant cell wall degradation and biosynthesis gene clusters for the production of secondary metabolites in the genome. Comparison with the candidate effectome detected distinctive variations between …

Biobased Sprayable Mulch Films Suppressed Annual Weeds In Vegetable Crops, Eliott Gloeb, Sibel Irmak, Loren Isom, John L. Lindquist, Samuel E. Wortman

Department of Agronomy and Horticulture: Faculty Publications

Biobased sprayable mulch (BSM) films are a potential alternative to herbicides, polyethylene plastic mulch film, and hand weeding for specialty crops. We developed a series of BSM films using locally available biomaterials [including corn (Zea mays) starch, glycerol, keratin hydrolysate, corn gluten meal, corn zein, eggshells, and isolated soy (Glycine max) protein] and tested their effects on weeds and crop yield during a total of seven greenhouse or field trials between 2017 and 2019 in Nebraska, USA. Application rates of BSM films applied in pots (greenhouse), planting holes in plastic film (field), or bed tops (field) …

Mango Surface Color Features Measurement Using Digital Image Processing, Md Towfiqur Rahman, Goutom Kumar, Md Abdul Momin

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Summary

Postharvest processing of agricultural produce is still done the conventional way in Bangladesh. Manual grading of agricultural produce, especially fruits and vegetables, is laborious and costly due to acute shortage of labor during the peak season, as well as difficulty maintaining the product quality. Machine vision system (MVS) applications are widely used nowadays as a non-destructive and cost-effective technology for automatically grading and sorting large volumes of produce in the packing house according to size, shape, color, texture, and surface defects. In this study, a simple MVS was constructed measuring different color features of mango fruit surface as a …

Framework For The Use Of Extended Reality Modalities In Aec Education, Barbara Oliveira Spitzer, Jae Hoon Ma, Ece Erdogmus, Ben Kreimer, Erica Ryherd, Heidi Diefes-Dux

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The educational applications of extended reality (XR) modalities, including virtual reality (VR), augmented reality (AR), and mixed reality (MR), have increased significantly over the last ten years. Many educators within the Architecture, Engineering, and Construction (AEC) related degree programs see student benefits that could be derived from bringing these modalities into classrooms, which include but are not limited to: a better understanding of each of the subdisciplines and the coordination necessary between them, visualizing oneself as a professional in AEC, and visualization of difficult concepts to increase engagement, self-efficacy, and learning. These benefits, in turn, help recruitment and retention efforts …

Context And Content Of Teaching Conversations: Exploring How To Promote Sharing Of Innovative Teaching Knowledge Between Science Faculty, A. Kelly Lane, Brittnee Earl, Stephanie Feola, Jennifer E. Lewis, Jacob D. Mcalpin, Karl Mertens, Susan E. Shadle, John Skvoretz, John P. Ziker, Marilyne Stains, Brian A. Couch, Luanna B. Prevost

School of Biological Sciences: Faculty Publications

Background: Change strategies may leverage interpersonal relationships and conversations to spread teaching innovations among science faculty. Knowledge sharing refers to the process by which individuals transfer information and thereby spread innovative ideas within an organization. We use knowledge sharing as a lens for identifying factors that encourage productive teaching-related conversations between individuals, characterizing the context and content of these discussions, and understanding how peer interactions may shape instructional practices. In this study, we interview 19 science faculty using innovative teaching practices about the teaching-focused conversations they have with different discussion partners.

Results: This qualitative study describes characteristics of …

Late Quaternary Biotic Homogenization Of North American Mammalian Faunas, Danielle Fraser, Amelia Villaseñor, Anikó B. Tóth, Meghan A. Balk, Jussi T. Eronen, W. Andrew Barr, A. K. Behrensmeyer, Matt Davis, Andrew Du, J. Tyler Faith, Gary R. Graves, Nicholas J. Gotelli, Advait M. Jukar, Cindy V. Looy, Brian J. Mcgill, Joshua H. Miller, Silvia Pineda-Munoz, Richard Potts, Alex B. Shupinski, Laura C. Soul, S. Kathleen Lyons

School of Biological Sciences: Faculty Publications

Biotic homogenization—increasing similarity of species composition among ecological communities—has been linked to anthropogenic processes operating over the last century. Fossil evidence, however, suggests that humans have had impacts on ecosystems for millennia. We quantify biotic homogenization of North American mammalian assemblages during the late Pleistocene through Holocene (~30,000 ybp to recent), a timespan encompassing increased evidence of humans on the landscape (~20,000–14,000 ybp). From ~10,000 ybp to recent, assemblages became significantly more homogenous (>100% increase in Jaccard similarity), a pattern that cannot be explained by changes in fossil record sampling. Homogenization was most pronounced among mammals larger than 1 …

Tvir: A Comprehensive Vegetable Information Resource Database For Comparative And Functional Genomic Studies, Tong Yu, Xiao Ma, Zhuo Liu, Xuehuan Feng, Zhiyuan Wang, Jun Ren, Rui Cao, Yingchao Zhang, Fulei Nie, Xiaoming Song

Department of Food Science and Technology: Faculty Publications

Vegetables are an indispensable part of the daily diet of humans. Therefore, it is vital to systematically study the genomic data of vegetables and build a platform for data sharing and analysis. In this study, a comprehensive platform for vegetables with a user-friendly Web interface—The Vegetable Information Resource (TVIR, http://tvir.bio2db.com)—was built based on the genomes of 59 vegetables. TVIR database contains numerous important functional genes, including 5215 auxin genes, 2437 anthocyanin genes, 15 002 flowering genes, 79 830 resistance genes, and 2639 glucosinolate genes of 59 vegetables. In addition, 2597 N6-methyladenosine (m6A) genes were identified, including 513 writers, 1058 erasers, …

High Throughput And Highly Controllable Methods For In Vitro Intracellular Delivery, Justin Brooks, Grayson Minnick, Prithvijit Mukherjee, Arian Jaberi, Lingqian Chang, Horacio D. Espinosa, Ruiguo Yang

Department of Mechanical and Materials Engineering: Faculty Publications

In vitro and ex vivo intracellular delivery methods hold the key for releasing the full potential of tissue engineering, drug development, and many other applications. In recent years, there has been significant progress in the design and implementation of intracellular delivery systems capable of delivery at the same scale as viral transfection and bulk electroporation but offering fewer adverse outcomes. This review strives to examine a variety of methods for in vitro and ex vivo intracellular delivery such as flow-through microfluidics, engineered substrates, and automated probe-based systems from the perspective of throughput and control. Special attention is paid to a …

Divergent Serpentoviruses In Free-Ranging Invasive Pythons And Native Colubrids In Southern Florida, United States, Steven B. Tillis, Jillian M. Josimovich, Melissa A. Miller, Laura L. Hoon-Hanks, Arik M. Hartmann, Natalie M. Claunch, Marley E. Iredale, Tracey D. Logan, Amy A. Yackel Adams, Ian A. Bartoszek, John S. Humphrey, Bryan M. Kluever, Mark D. Stenglein, Robert N. Reed, Christina M. Romagosa, James F.X. Wellehan, Robert J. Ossiboff

United States Department of Agriculture Wildlife Services: Staff Publications

Burmese python (Python bivittatus) is an invasive snake that has significantly affected ecosystems in southern Florida, United States. Aside from direct predation and competition, invasive species can also introduce nonnative pathogens that can adversely affect native species. The subfamily Serpentovirinae (order Nidovirales) is composed of positive-sense RNA viruses primarily found in reptiles. Some serpentoviruses, such as shingleback nidovirus, are associated with mortalities in wild populations, while others, including ball python nidovirus and green tree python nidovirus can be a major cause of disease and mortality in captive animals. To determine if serpentoviruses were present in invasive Burmese …

Mitochondrial Functions Are Major Targets Of Isocyanide Activity In Saccharomyces Cerevisiae, Morgan A. Siemek

School of Biological Sciences: Dissertations, Theses, and Student Research

The isocyanide functional group is important in the synthesis of many organic compounds and is found in natural products produced by plants, bacteria, marine invertebrates, and fungi. The antimicrobial activities of isocyanide compounds have been documented for almost 70 years, however, the biochemical targets and mechanisms of action remain poorly defined. We report antimicrobial activity of 4-para-nitrophenyl-isocyanide (p-NPIC) against a model fungus, Saccharomyces cerevisiae, and the human fungal pathogen Candida albicans. To identify the cellular and molecular targets of p-NPIC, we screened the non-essential single gene-deletion collection of S. cerevisiae. We …

Molecular Mechanisms Underlying Aberrant Circulating Steroid Hormones In Gnrhr-Ii Knockdown Boars And Their Control Littermates, Dorothy H. Elsken

Department of Animal Science: Dissertations, Theses, and Student Research

Swine are the only livestock species that produce a functional protein for both GnRH-II and its receptor (GnRHR-II). Our laboratory reported that the interaction between GnRH-II and GnRHR-II facilitates testosterone production, independent of LH stimulation. To further examine GnRHR-II function, we developed a swine line with 70% reduced GnRHR-II mRNA levels (GnRHR-II KD) compared to control littermates. Mass spectrometry analysis of serum revealed that circulating levels of gonadal steroids were reduced in mature transgenic vs. control boars. Paradoxically, evaluation of testicular tissue indicated no difference between lines for gonadal steroid hormone levels. To address a potential cause for this discrepancy, …

The Invisible Meat Microcosmos: Investigations Of Processed Meats' Specific Spoilage Organisms, Rebecca Furbeck

Department of Animal Science: Dissertations, Theses, and Student Research

As humankind grows in population, so will our need to compete against bacterial populations which spoil foodstuffs before we are able to consume them. This dissertation aims to identify the bacterial communities responsible for meat spoilage, and the mechanisms that govern the behaviors of these organisms. The literature review summarizes the state of knowledge regarding factors that influence meat microbiome composition, and how analytical methods can influence research outcomes. Study 1 aimed to identify the impact of additional ingredients and processing steps on the microbial ecology of processed turkey products. The main specific spoilage organisms (SSOs) belonged to the orders …

Variance Component Estimates For Growth Traits In Beef Cattle Using Selected Variants From Imputed Low-Pass Sequence Data, Chad A. Russell

Department of Animal Science: Dissertations, Theses, and Student Research

A beef cattle population (n = 2,343) was used to assess the impact of variants identified from imputed low-pass sequence (LPS) on the estimation of variance components and genetic parameters of birth weight (BWT) and post weaning gain (PWG). Variants were selected based on functional impact and were partitioned into four groups (Low, Modifier, Moderate, High) based on predicted functional consequences and re-partitioned based on consequence of mutation, such as missense and untranslated region variants, into six groups (G1-G6). Each subset was used to construct a genomic relationship matrix (GRM) for univariate animal models. Multiple analyses were conducted to …

Evaluation Of Nutritional Factors Affecting Sow Reproductive Longevity, J'Nan E. Wittler

Department of Animal Science: Dissertations, Theses, and Student Research

Sow reproductive longevity is an important trait for swine operations from a production and economic standpoint. Previous research has shown that a sow needs to produce 3 litters before she covers the costs associated with introducing her to the operation. A literature review of research conducted related to sow longevity is discussed in Chapter 1. Chapters 2 and 3 present data from the University of Nebraska – Lincoln’s long-term sow longevity research. The research looks at the effects of energy restriction with soy hulls during gilt development on sow reproductive longevity through 4 parities. Chapter 2 presents data from replications …

Multi-Criteria Decision Matrix Method In The Risk Analysis Of Biodiesel Production Processes, Kaylee Alles

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Renewable fuel technologies aim to mitigate the non-renewability of fossil fuels, challenges with increased energy demand, and the climate impact of fossil fuel emissions. However, before investing in renewable technologies, there need to be decision strategies that assess and identify the best alternatives according to stakeholder priorities. There is also a concern about whether the technologies that are the “most sustainable” effectively meet the acceptable risk requirements of stakeholders. In response to this question, a risk-adapted multi-criteria decision model was developed and compared to a sustainability study that evaluated five renewable diesel technologies, including Green Diesel I, II, and III; …

Identifying How Summer Camp Experiences Affect Children’S Environmental Literacy, Quinn Kimbell

Department of Environmental Studies: Undergraduate Student Theses

Ensuring that children are prepared for environmental issues in the future can be aided by building the skill of environmental literacy. A key factor in building this skill is having natural experiences and creating one’s connection and perception of the environment. This paper aims to identify if summer camps increase children’s perception of the environment. This was completed by testing children with an environmental perception survey (Children’s Environmental Perception Scale) before and after attending a summer camp and assessing environmental pollution knowledge through drawing (modified Draw-An-Environment Test). The rural Nebraska summer camp subjected the children to many outdoor experiences, including …

Parametric Modeling Of Biomimetic Sharkskin For Wire Edm For Drag Reduction And Hydrophobicity, Joel Maxwell

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

This research sets out to demonstrate the viability of parametric modeling for biomimetic sharkskin in the effort to reduce drag and create a self-cleaning surface. Multiple designs were created to be machined by Wire EDM on stainless steel and titanium and were comparatively tested. Limitations of current manufacturing processes to economically produce naturally occurring structures such as sharkskin, emphasize the need to be able to calculate the most accurate design for a given manufacturing process. By designing a simplified but parametrically consistent model compared to an accurately depicted 3D model of sharkskin, the textured samples produced can be further tested …

Panarchy Suggests Why Management Mitigates Rather Than Restores Ecosystems From Anthropogenic Impact, David G. Angeler, Ran Hur

School of Natural Resources: Faculty Publications

Panarchy, a model of dynamic systems change at multiple, interconnected spatiotemporal scales, allows assessing whether management influences ecological processes and resilience. We assessed whether liming, a management action to counteract anthropogenic acidification, influenced scale-specific temporal fluctuation frequencies of benthic invertebrates and phytoplankton assemblages in lakes. We also tested whether these fluctuations correlated with proxies of liming (Ca:Mg ratios) to quantify scale-specific management effects. Using an ecosystem experiment and monitoring data, time series analyses (1998–2019) revealed significant multiscale temporal (and thus panarchy) structure for littoral invertebrates across limed and reference lakes. Such patterns were inconsistent for sublittoral invertebrates and phytoplankton. When …