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Full-Text Articles in Entire DC Network
Temporal Variability In Grassland Leaf Water Content Is Strongly And Similarly Dependent On Soil Moisture Among Dominant Grasses, Henry K. Joniak, Andrew Felton
Temporal Variability In Grassland Leaf Water Content Is Strongly And Similarly Dependent On Soil Moisture Among Dominant Grasses, Henry K. Joniak, Andrew Felton
RURALS: Review of Undergraduate Research in Agricultural and Life Sciences
Vegetation in semi-arid rangeland ecosystems is typically characterized by the presence of a few dominant grass species that control ecosystem processes and, by extension, ecosystem services such as forage production. Thus, understanding and comparing the responses of dominant forage species to climatic variability can lend insight into how functioning and services in these ecosystems will respond to climate change. Here, we designed a transect-based study to assess and compare the temporal relationship between soil moisture (volumetric water content, VWC) and a key functional trait (leaf water content, LWC) among two of the dominant forage grass species in Southwestern Montana. Sampling …
The Official List Of The Birds Of Nebraska: 2024, Mark A. Brogie
The Official List Of The Birds Of Nebraska: 2024, Mark A. Brogie
Nebraska Bird Review
The duties of the Nebraska Ornithologists’ Union Records Committee (NOURC 2010) include:
A. The committee shall publish an official list of the birds of Nebraska.
B. The official list will include all those species whose occurrence has been reported in Nebraska (and approved by the NOURC).
C. The committee shall keep the official list current.
D. The committee shall publish a list of species for which details are requested with every sighting reported.
The 2024 NOURC has completed the above-described duties, and the following is a result of its endeavors.
The “Official List of the Birds of Nebraska” was last …
First Confirmed Nebraska Breeding Record Of The Common Raven (Corvus Corax) Since The 19th Century, Eugene A. Huryn, Jacob C. Cooper
First Confirmed Nebraska Breeding Record Of The Common Raven (Corvus Corax) Since The 19th Century, Eugene A. Huryn, Jacob C. Cooper
Nebraska Bird Review
In Nebraska, the Common Raven was likely widespread prior to 1900, being codistributed with the American Bison (Bison bison). Records in this time are spotty, but consistent. Thomas Say reported a nearly fledged brood—the only confirmed breeding record in this period—at Fort Calhoun in Washington County on May 12, 1820. A Common Raven was collected at Fort Randall, on the Missouri River just north of the modern Nebraska–South Dakota border, in the fall of 1857 during the Lieutenant Warren Expeditions. Another specimen, now lost, was collected by J. B. Hasty in 1899 in Arapahoe, Furnas County. Bruner et …
Summer Field Report, June–July 2025, W. Ross Silcock
Summer Field Report, June–July 2025, W. Ross Silcock
Nebraska Bird Review
I have mentioned previously the breeding categories that are available to observers in eBird checklists. This database is becoming more comprehensive and useful, and I encourage observers to use this eBird feature.
Usefulness of Merlin-derived checklists continues to be an issue. As an example, Merlin seems to love White-winged Doves; there were 52 undocumented Merlin reports of this species this summer, no doubt some correctly identified and acceptable if observers had taken a minute to add even minimal observation details to support Merlin’s identifications.
A vexing issue for me is determining the status of midsummer (i.e. between spring and fall …
The Nebraska Bird Review (September 2025) 93(3), Whole Issue
The Nebraska Bird Review (September 2025) 93(3), Whole Issue
Nebraska Bird Review
Summer Field Report, June–July 2025, by W. Ross Silcock
First Confirmed Nebraska Breeding Record of the Common Raven (Corvus corax) since the 19th Century, by Eugene A. Huryn and Jacob C. Cooper
2024 (36th) Report of the NOU Records Committee, by Mark A. Brogie
The Official List of the Birds of Nebraska: 2024, compiled by Mark A. Brogie
Subscription and Organization Information
2024 (36th) Report Of The Nou Records Committee, Mark A. Brogie
2024 (36th) Report Of The Nou Records Committee, Mark A. Brogie
Nebraska Bird Review
The functions and methods of the Nebraska Ornithologists’ Union Records Committee (NOURC) are described in its bylaws (NOURC 2010). The committee’s purpose is to provide a procedure for documenting unusual bird sightings and to establish a list of all documented birds for Nebraska. Species for which the NOURC seeks documentation (NOURC Review List) can be found at the NOU website: www.NOUbirds.org.
Starting in 2020, the NOURC decided to deal mainly with those species deemed as Accidental on the “Official List of the Birds of Nebraska.” Casual species and out-of- range species are now summarized in the “Seasonal Reports” of the …
Assessment Of Microbial Quality And Safety, Including Aflatoxin B1, In Buckwheat Flour And Groats, La Fontaine Bahatsi
Assessment Of Microbial Quality And Safety, Including Aflatoxin B1, In Buckwheat Flour And Groats, La Fontaine Bahatsi
Department of Food Science and Technology: Dissertations, Theses, and Student Research
Buckwheat (Fagopyrum esculentum), a gluten-free pseudocereal, has gained popularity in global food markets for its nutritional value and functional properties. However, despite its health-promoting potential, buckwheat is vulnerable to microbial contamination and mycotoxin accumulation during cultivation, processing, and storage. These factors present significant food safety concerns that remain understudied, particularly in North America.
This study investigated the microbiological quality and mycotoxin contamination of buckwheat flour and groats collected from different suppliers via online sourcing. Samples were collected in two consecutive years (2024-2025). Microbiological quality, including aerobic plate counts (APC), Enterobacteriaceae, coliforms, E. coli, yeasts, and molds, was evaluated …
Unl Emeriti And Retirees Association Newsletter, August 2025
Unl Emeriti And Retirees Association Newsletter, August 2025
UNL Emeriti and Retirees Association: Newsletters and Other Materials
University of Nebraska-Lincoln Emeriti and Retirees Association Newsletter, August 2025
President's message: Continuing our commitment, Pam Edwards
Welcome to new members
Wake up your well-being
Book review, Atlas of the Heart
A look ahread at programming
Recapping past programming
Memory moments
Two Essays On Index-Based Risk Management In U.S. Rangeland And Livestock Production, Wajdi Belgacem
Two Essays On Index-Based Risk Management In U.S. Rangeland And Livestock Production, Wajdi Belgacem
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
This dissertation investigates two distinct but complementary dimensions of risk management in United States rangeland agriculture. Essay 1 measures spatial variation in basis risk within the Pasture, Rangeland, and Forage (PRF) rainfall-index program for 176 Nebraska grid cells (1988–2023). By linking official NOAA rainfall indices with 30-m Rangeland Analysis Platform biomass estimates, we find rainfall–forage correlations that peak at 0.45 but display pronounced heterogeneity. The probability that neither insured interval triggers during an actual forage loss averages 12%, rising to nearly 30% in several Sandhills cells, whereas optimally pairing late-spring and summer intervals reduces complete misses below 10%. These results …
Large Scale Deletion And Rebalancing Within The K1c Kafirin Family In Sorghum, Tyler W. Ferris
Large Scale Deletion And Rebalancing Within The K1c Kafirin Family In Sorghum, Tyler W. Ferris
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Sorghum bicolor (L.) Monech (sorghum) is cultivated as food for humans and livestock and is valued for its low input requirements. However, sorghum grain protein is deficient in the essential amino acid lysine and has poor protein digestibility because of the abundance of proline-rich kafirins that constitute >70% of proteins that form low-digestibility protein bodies. To reduce kafirin expression in the endosperm, and elicit wholesale proteome rebalancing to increase non-kafirin proteins, a single-guide RNA (sgRNA) Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR/Cas9) construct was previously used to target members of the highly-repetitive alpha-kafirin family, k1C in RTx430 sorghum. The …
Plant Nutrient Interactions In High-Yielding Soybean Environments, Victoria Inklman
Plant Nutrient Interactions In High-Yielding Soybean Environments, Victoria Inklman
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Plant nutrient demands and limitations are usually studied individually by nutrient. Here, we investigated how nitrogen (N) limitation in high-yielding soybean environments affects the uptake, removal, and residual of other plant macro- and micronutrients. The objective of this study was to quantify the uptake, removal, and residual levels of soybean macro- and micronutrients under N-limited conditions and to identify nutrient priorities for high-yielding soybean systems. Aboveground plant samples at physiological maturity were collected in 19 high-yielding soybean fields with N limitation across the state of Nebraska. Reference plots with ample N supply were included within each field to compare macro- …
Crop, Soil Nutrient, And Soil Health Responses Within Integrated Crop And Livestock Systems, Alyssa K. Hall
Crop, Soil Nutrient, And Soil Health Responses Within Integrated Crop And Livestock Systems, Alyssa K. Hall
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
We evaluated the influences of grazing livestock on crop production, soil nutrients, and soil health indicators of integrated crop livestock systems using three experiments during a seven-yr. period. Objectives were to (1) determine livestock grazing and cropping system effects on crop yield and soil properties across six yr. in corn-soybean (C-S) and wheat-corn-soybean (W-C-S) systems with and without periodic composted manure application, (2) explore seasonal variation in soil nutrient patterns over two yr., and (3) measure residual responses for corn grain yield plus soil health indicators in yr. seven following a six-yr. study. In experiment 1, neither livestock grazing ( …
Detection Of Activity Cliffs Produced By Anti-Cancer Drugs And An Algorithm For Reliable Predictions In Affected Areas, Sarah Josephine Aurit
Detection Of Activity Cliffs Produced By Anti-Cancer Drugs And An Algorithm For Reliable Predictions In Affected Areas, Sarah Josephine Aurit
Department of Statistics: Dissertations, Theses, and Student Research
An activity cliff (AC) occurs when drugs close in chemical space produce dissimilar biological results. We focus on developing an inferential procedure to detect the presence of ACs in a chemical landscape. If detected, we provide a distance-based procedure that can be used to identify regions of stability in the chemical landscape of interest and generate prediction with higher precision in those areas of stability. We conceptualize the chemical landscape as a spatial random field and use spatial models for prediction of efficacy for new drugs based on “distance” in chemical space. We argue that an AC manifests itself by …
Educational Attainment Patterns Among Mena Adults: A Comparative Study Of Native- And Foreign-Born Groups In The Us, Michael Okyere
Educational Attainment Patterns Among Mena Adults: A Comparative Study Of Native- And Foreign-Born Groups In The Us, Michael Okyere
Department of Sociology: Dissertations, Theses, and Student Research
This study examines educational attainment patterns among Middle Eastern and North African (MENA) adults in the United States, focusing on how nativity status, residential patterns, and gender shape these outcomes. Drawing on segmented assimilation and spatial assimilation theories, I analyze data from the 2018-2022 American Community Survey using ordered logistic regression models. Results indicate that educational attainment varies by gender, with MENA women consistently achieving higher education levels than men across all nativity groups, though this advantage varies considerably in magnitude between native-born and foreign-born subgroups. Residence in ethnic enclaves demonstrates a strong negative association with educational attainment among foreign-born …
Applications Of Preclinical Magnetic Resonance Imaging In The Treatment Of Traumatic Brain Injury And Understanding Carotid Artery Atherosclerosis, Evan Timothy Curtis
Applications Of Preclinical Magnetic Resonance Imaging In The Treatment Of Traumatic Brain Injury And Understanding Carotid Artery Atherosclerosis, Evan Timothy Curtis
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
Advances in magnetic resonance imaging (MRI) provide the opportunity to investigate research questions that have been left unanswered. In the cases of traumatic brain injury (TBI) and carotid artery atherosclerosis, MRI is a resource for non-invasively viewing the phenomena taking place. Additionally, potential interventions and treatments can be observed without harm to the subject. This dissertation expands the understanding of two preclinical applications of MRI: traumatic brain injury and carotid artery atherosclerosis in mouse models.
TBI is a leading cause of death and disability for individuals between 15–45 years of age and effective pharmaceutical interventions for treating the secondary damage …
A Multi-Isotope Investigation Of Mammoth Diet, Habitat, And Movement Patterns In The Central Great Plains, U.S.A., Jacob Mccloskey
A Multi-Isotope Investigation Of Mammoth Diet, Habitat, And Movement Patterns In The Central Great Plains, U.S.A., Jacob Mccloskey
Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research
During the Last Glacial Maximum (LGM), the Great Plains in Nebraska consisted of wooded parklands and grasslands, whereas spruce (Picea) forests, parklands, and steppe grasslands dominated east of the Missouri River. I analyzed bulk carbon (δ13C), oxygen (δ18O), and strontium (87Sr/86Sr) isotopes from tooth enamel in isolated mammoth (Mammuthus) molars to compare diet and movement patterns in two late Pleistocene assemblages: one in Nebraska (n = 24), and one in western Iowa and Missouri (n = 17). Furthermore, I identified a morphometric subset of molars as …
Study Of Ai Applications In Biomedical Data Acquisition, Communication, And Analysis: Cest Mri Acceleration And Ecg Transmissions, Adarsha Bhattarai
Study Of Ai Applications In Biomedical Data Acquisition, Communication, And Analysis: Cest Mri Acceleration And Ecg Transmissions, Adarsha Bhattarai
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
This dissertation investigates the application of artificial intelligence in biomedical data acquisition, communication, and analysis to advance neurological research and to enable the early detection of cardiovascular conditions. Despite significant advances in imaging and physiological modalities, challenges persist. Imaging modalities, such as the chemical exchange saturation transfer magnetic resonance imaging (CEST MRI) technique are challenged by a prolonged data acquisition time and high operational costs. In addition, physiological modalities such as electrocardiogram (ECG) sensors face constraints in providing uninterrupted signal monitoring which is crucial for the timely detection of premature cardiac abnormalities. The primary goal of this work is to …
Evaluation Of Performance Characteristics And Groundwater Contamination Risks Associated With On-Farm Swine Carcass Disposal Via Composting And Shallow Burial With Carbon, Gustavo Castro Garcia
Evaluation Of Performance Characteristics And Groundwater Contamination Risks Associated With On-Farm Swine Carcass Disposal Via Composting And Shallow Burial With Carbon, Gustavo Castro Garcia
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
This dissertation evaluates the performance of three on-farm swine carcass disposal methods: whole carcass composting (WCC), ground carcass composting (GCC), and shallow burial with carbon (SBC), focusing on biosecurity factors and groundwater contamination risks. Foreign animal diseases (FADs), such as African swine fever and classical swine fever, pose severe economic and animal well-being risks if introduced to the United States. With confirmation of an FAD, swine movement will be halted, creating an urgent need for practical, biosecure, and environmentally responsible on-farm disposal strategies for swine carcasses. Nebraska, as a leading swine-producing state, exemplifies the vulnerability of high-density livestock regions to …
Hormonal Modulation Of Sexual Approach And Avoidance Among Women With A History Of Sexual Trauma, Anneliis Susan Sartin-Tarm
Hormonal Modulation Of Sexual Approach And Avoidance Among Women With A History Of Sexual Trauma, Anneliis Susan Sartin-Tarm
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
A history of sexual trauma places women at a high risk for sexual dysfunction and other health sequelae, yet the influence of ovarian hormones in this population is poorly understood. This dissertation tested the theory that the effects of ovarian hormones are mediated by cognitive approach-avoidance systems to shape sexual well-being, and that this process is moderated by sexual trauma history. This was investigated across three studies examining the menstrual cycle, hormonal contraceptive use, and menopause. Across each chapter, I present complementary evidence demonstrating that hormones interact with the interpretation of ambiguous internal and external cues with respect to sexual …
Reductive And Nucleophilic Cleavage Of Peroxides And Synthesis Of Tocotrienols As Radioprotective Targets, Amber Marie Schuster
Reductive And Nucleophilic Cleavage Of Peroxides And Synthesis Of Tocotrienols As Radioprotective Targets, Amber Marie Schuster
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
I. SET CLEAVAGE OF PEROXIDES: INFLUENCE OF REDUCTANT AND PEROXIDE ON THE RATE AND MODE OF ALKOXY RADICAL FORMATION
The reductive cleavage of organic peroxides to generate alkoxy radicals is frequently accomplished via single-electron transfer (SET) from a reductant. Previous reports employ either symmetrical peroxides or peroxides with predictable cleavage behavior, such as peresters. We were interested in how the structure of the peroxide and the nature of the reducing system combine to impact the rate of reaction and the selectivity for alkoxy radical formation during cleavage of unsymmetric peroxides. In this dissertation, one will find the reactions of a …
Educating The New Generation Of Food Scientists Through Innovative Learning Experiences, Karen Andrea Nieto Flores
Educating The New Generation Of Food Scientists Through Innovative Learning Experiences, Karen Andrea Nieto Flores
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
Food science provides an opportunity to engage high school students in Science, Technology, Engineering, and Mathematics (STEM) by connecting classroom concepts to real-world applications. Despite the field’s relevance to public health, food safety, sustainability, and innovation, food science remains largely absent from high school curricula, and few students recognize it as a viable STEM pathway. This research addressed this gap by evaluating immersive summer camp experiences and teacher-focused curriculum review as strategies to increase food science awareness and interest among students and educators. A literature review traced the historical development and current landscape of K–12 food science education, identifying barriers …
Egg White Hydrolysate In Hypertension: A Mechanistic Investigation Of Gut Microbiota Dependent And Independent Pathways, Emerson David Nolasco
Egg White Hydrolysate In Hypertension: A Mechanistic Investigation Of Gut Microbiota Dependent And Independent Pathways, Emerson David Nolasco
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
Cardiovascular diseases are one of the leading causes of mortality worldwide in which hypertension is a risk factor. Present pharmacological interventions require long-term adherence to the therapy and are often associated with undesirable side effects. Moreover, treatments have overlooked the role of the microbiome in the development of hypertension. Egg white hydrolysate (EWH) has exhibited antihypertensive properties with potential to be used as a natural alternative for the prevention and management of hypertension. However, EWH peptide’s effect on the gut microbiome remains yet to be elucidated. Studies have described that a portion of the ingested protein can remain undigested as …
Functional Genomics Of Phosphatidylcholine Biosynthesis In Saccharomyces Cerevisiae, Amanda Marie Maliva
Functional Genomics Of Phosphatidylcholine Biosynthesis In Saccharomyces Cerevisiae, Amanda Marie Maliva
Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–
Phosphatidylcholine (PtdCho) is a prominent structural building block of cell and organelle membranes in animal, plant, and fungal cells and some bacteria. Due to its abundant nature in the plasma membrane and intracellular organelle membranes in eukaryotes, the biosynthesis of PtdCho must remain regulated to preserve the correct membrane lipid composition. Dysregulations in PtdCho metabolism can lead to mitochondrial dysfunction, cell death, and the development of diseases including cancer, atherosclerosis, and hepatic diseases. Knowledge of PtdCho has remained limited to the genes involved in its three biosynthetic pathways (Kennedy (K), methylation (M), and acyltransferase (A)), despite the growing realization of …
Characterization Of Undergraduate Biology Instructors’ Goals And Strategies For Implementing Quantitative Reasoning, Anum Khushal
Characterization Of Undergraduate Biology Instructors’ Goals And Strategies For Implementing Quantitative Reasoning, Anum Khushal
School of Natural Resources: Dissertations, Theses, and Student Research
Quantitative reasoning (QR) is the application of mathematics and statistics to real-life and scientific contexts. It is essential for understanding complex biological phenomena and analyzing large datasets in both academic and professional settings. In response to the growing demand for QR skills, biology educators and researchers have engaged in curricular reforms and education research. This qualitative study explores how undergraduate biology instructors integrate QR into their teaching using a framework informed by pedagogical content knowledge (PCK) and QR. The study involved 21 biology faculty from various U.S. institutions who intentionally incorporated QR in their instruction. Data was collected through semi-structured …
Multiscale Drivers Of Water Level Fluctuations And Nutrient Availability In Small Intermittent Reservoirs In The Us Midwest, Uchechukwu Vitus Chinatu Ogbenna
Multiscale Drivers Of Water Level Fluctuations And Nutrient Availability In Small Intermittent Reservoirs In The Us Midwest, Uchechukwu Vitus Chinatu Ogbenna
School of Natural Resources: Dissertations, Theses, and Student Research
Reservoir dynamics are often captured by fluctuations in water surface elevation, which reflect a complex interplay of hydrologic inputs, climatic conditions, land use influences, and management operations. While water level fluctuations (WLFs) in large regulated systems have been widely studied, the drivers and implications of WLFs in small reservoirs, particularly those fed by intermittent streams, remain poorly understood. Here, we examined the temporal dynamics of WLFs and their relationship with nutrient availability in nine small reservoirs in the U.S. Midwest using daily records from 1985 to 2022. We used water level classification from modified Zscore and transition matrices to assess …
Exploring Racial Identity Among East And Southeast Asian Transracial Adoptees In The United States Through Communication Theory Of Identity, Brooke Marie Hoá Hornberger
Exploring Racial Identity Among East And Southeast Asian Transracial Adoptees In The United States Through Communication Theory Of Identity, Brooke Marie Hoá Hornberger
Department of Communication Studies: Dissertations, Theses, and Student Research
The purpose of this study was to understand how East and Southeast Asian transracial adoptees (ESATA) in White adoptive families conceptualize and communicate their racial identity. ESATAs endure various challenges surrounding race that makes it important to understand how ESATAs understand their racial identity, the tensions they might experience, and how they management the tensions surrounding racial identity. Using the theoretical framework Communication Theory of Identity (Hecht, 1993), 25 ESATAs were interviewed about different frames of identity and potential identity gaps they experience surrounding racial identity. In addition, ESATAs were asked about how they communicatively manage identity gap tensions mapping …
Aptamer Selection And Development Of Electrochemical Aptamer-Based Sensors For Neuropeptide Y, Evelyn Adela Carreto Guevara
Aptamer Selection And Development Of Electrochemical Aptamer-Based Sensors For Neuropeptide Y, Evelyn Adela Carreto Guevara
Department of Chemistry: Dissertations, Theses, and Student Research
In this thesis, we report the results of four aptamers obtained from an aptamer selection process called the systematic evolution of ligands by exponential enrichment (SELEX) with affinity to Neuropeptide Y (NPY). NPY is a highly abundant peptide transmitter with widespread distribution throughout the body which affects various physiological functions. These functions include energy homeostasis, appetite regulation, stress response, and anxiety regulation. Dynamic monitoring of NPY levels is crucial for better understanding behaviors in individuals with neurological disorders associated with NPY. Aptamers are synthetic oligonucleotides obtained through SELEX which have a binding affinity to a target of interest when in …
The Earliest University Of Nebraska Graduate Degrees, 1886-1909, Mark A. Griep
The Earliest University Of Nebraska Graduate Degrees, 1886-1909, Mark A. Griep
Mark A. Griep Publications
This list of the earliest graduate degrees awarded by the University of Nebraska (NU) in Lincoln was assembled to learn about the university’s research activity that preceded its admission to the prestigious Association of American Universities (AAU) in 1909.
Development Of A Machine Learning Framework For An Irrigation Decision Support System, Eric Wilkening, Derek M. Heeren, Yeyin Shi, Laila A. Puntel, Guillermo R. Balboa, Abia Katimbo, Kuan Zhang, Precious Nneka Amori, Bruno Lena
Development Of A Machine Learning Framework For An Irrigation Decision Support System, Eric Wilkening, Derek M. Heeren, Yeyin Shi, Laila A. Puntel, Guillermo R. Balboa, Abia Katimbo, Kuan Zhang, Precious Nneka Amori, Bruno Lena
Department of Agricultural and Biological Systems Engineering: Faculty Publications
Currently used irrigation scheduling techniques often require significant human intervention and are time consuming, particularly for variable rate irrigation. This research aimed to develop a conceptual framework that incorporates disparate data sources leveraging both mechanistic and machine learning (ML) approaches. The overarching objective is to utilize the growing availability of data and technology to manage irrigation more precisely, which will minimize negative impacts of irrigation on our water resources. An initial irrigation machine learning model was proposed and tested in this study as a key component of an edge-cloud computing and federated learning decision-making framework. The specific objectives were (1) …
Improved Rumen Microbiome Interpretation Via Empirical Filtration Derived From Known Mock Microbiomes, Wesley A. Tom
Improved Rumen Microbiome Interpretation Via Empirical Filtration Derived From Known Mock Microbiomes, Wesley A. Tom
School of Biological Sciences: Dissertations, Theses, and Student Research
The rumen microbiome plays a critical role in ruminant health and performance. As a consequence, many studies investigate microbial community composition using 16S rDNA based sequencing. As such, data quality and data filtering are critical to accurately identify microbial community composition. In this study we use mock communities to empirically select data filtering parameters to reduce artifact populations and compared the effect of filtering using different bioinformatic pipelines using rumen bacterial community data. The filtering parameters identified provides consistent estimates of rumen microbial diversity, regardless of bioinformatic pipeline utilized and provides a more accurate view of microbiome structure and composition. …