Digital Commons Network^™

Associations Of Variation In Mtdna With Feed Efficiency In Beef Cattle And The Evaluation Of Transcriptomic Changes In Fetal Kidney Due To Hydrallantois, Lauren Elizabeth Seier

Department of Animal Science: Dissertations, Theses, and Student Research

Project 1 focused on the central role that mitochondria play in ATP production, highlighting that variation within the mtDNA may influence feed efficiency. Variation in the mitochondrial genome was uncovered, and associations with feed efficiency in beef cattle were identified. Growth and feed intake phenotypes, as well as low-pass sequencing, were collected on beef steers across two populations. Protein coding variants were identified and used to classify animals into mitochondrial haplotypes. A linear mixed model was employed, which detected a significant association between mitochondrial haplotype and DMI. A significant haplotype with a variant in Complex I was associated with reduced …

The Effect Of Diet Formulations Containing Different Protein Sources On Energy And Nitrogen Utilization In Lactating Jersey Cows, Kortney Ann Harpestad

Department of Animal Science: Dissertations, Theses, and Student Research

It is well understood that lactating dairy cows require metabolizable protein (MP) for milk yield and milk protein synthesis. Diets with conventional feed sources like corn and soybean meal (SBM) may not sufficiently meet all MP and amino acid (AA) requirements so supplementation with more rumen undegradable protein (RUP) rich feeds or rumen-protected AA can be fed to support animal performance. The growth trajectory of biofuels has resulted in dramatic increases in the production of feeds like heat treated soybean meal (HTSBM). While the chemical composition of this product is understood, there is a need to better understand how HTSBM …

Drift Dynamics Of Early Life-Stage Invasive Carps, Saurav Karki

Department of Civil and Environmental Engineering: Dissertations, Theses, and Student Research

Asian carp species pose significant ecological threats to North American freshwater systems due to their invasive nature and prolific reproduction. Their semi buoyant eggs develop while drifting downstream with the river current. Understanding early life-stage transport is therefore critical for predicting recruitment potential and guiding management efforts. Existing fluvial egg drift models, including those relying on 1-D hydraulics and fully 3-D CFD-based models, are either inadequate for complex braided rivers or too computationally demanding for large-scale application. The Platte River in Nebraska, characterized by wide, shallow, multi-threaded channels, is dominated by two-dimensional flow conditions, making a depth-averaged 2-D modeling approach …

Don't Settle For Less: Incorporating Postcolonial And Settler Colonial Perspectives Into The Sociological Canon, Eli Xavier Ornelas

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

For decades now, post-/de-/settler-/ and anticolonial scholars have advanced the argument that sociology has largely failed to incorporate critical insights from theories of empire into the sociological canon. In this dissertation, I argue that introduction to sociology textbooks offer an important vantage point from which to assess conventional sociological knowledge as textbooks are often thought to be “reflections of the discipline.” I analyze the social theory and race chapters of 21 of the most often used introduction to sociology textbooks in the United States to investigate two chapters where insights from theories of empire would be present if indeed incorporated: …

Authentication And Message Integrity Verification For Emerging Wireless Networks, Ebuka Philip Oguchi

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation presents a comprehensive body of research on authentication and message integrity verification for emerging wireless networks, focusing on secret-free and physical layer security techniques across diverse, challenging, and unconventional environments.

It comprises four first-author contributions that span underground wireless systems, over-the-air (OTA) channels, vehicular communications, and nanoscale molecular networks.

The first contribution, Soil-Assisted Trust Establishment for Underground Wireless Networks (STUN), introduces a physical-layer trust bootstrapping protocol that achieves authentication and message integrity without pre-shared secrets. Leveraging underground-to-air propagation laws and trusted relay nodes, STUN resists active signal injection attacks and demonstrates security comparable to the unbalanced oil and …

Blood-Red And Flaming And True, Kate Gaskin

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Blood-Red and Flaming and True contains poems that explore the immense feelings of love and loss tied to the relationship between parent and child. They chronicle my experience raising a neurodivergent child, as well as undergoing infant loss and navigating a U.S. medical system that is renowned for putting women and people capable of giving birth—especially BIPOC—at greater risk than other countries with similar resources. Through poems that inhabit a variety of forms, I sift through grief and joy while attempting to tap into the sublime state that underlies extreme loss and love. Throughout, I investigate how lyric poetry is …

Rhetorics Of Encounter: Toward A Biocentric Theory Of Discourse, Matthew D. Whitaker

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Encounters with more-than-human identities are transformative moments that stand to affect dispositional and bodily change in individuals. From close brushes with wild animals in National Parks to everyday interactions with local ecologies, encounters invite us to feel and think differently about the nature of our realities. In Rhetorics of Encounter: Toward a Biocentric Theory of Discourse, I draw from interdisciplinary perspectives to disrupt the idea of rhetoric as a representational medium, arguing that rhetoric occurs not just through textual exchanges of words and symbols, but through embodied moments of contact with other responsive beings. Invoking George Kennedy’s theory …

Development And Evaluation Of Supported Ionic Liquid Membrane And Porphyrin Frameworks For Carbon Capture Separation, Sarang Ismail

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

The global urgency to mitigate anthropogenic CO₂ emissions has intensified the pursuit of energy-efficient separation technologies. Supported Ionic Liquid Membranes (SILMs) have emerged as promising candidates for CO₂ capture due to their tunable solubility-selectivity and low energy requirements. However, challenges such as mechanical instability, limited scalability, and trade-offs in transport performance have impeded their widespread adoption.

This thesis explores a systematic approach to designing and optimizing SILMs for enhanced CO₂ separation by tailoring polymer–ionic liquid interactions, processing conditions, and material architectures. A comprehensive set of studies were conducted using poly(vinylidene fluoride) (PVDF) with varying molecular weights, different grades of PEBAX®, …

Multivariate Mixture Regression Models With Known Group Membership And Informative Priors, Pahalapathirage Dona Kalani Hasanthika

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

We introduced couple different novel approaches to incorporate latent variable information to multivariate mixture regression models with both Gaussian and count data. We also evaluated the performance of these models with existing best approaches with simulated data from various sampling structures and also evaluated one of the models performance with rice metabolite data that provided some novel insights as well as validating existing literature about performance and behavior of these metabolites. We validated the method using extensive simulations and a real-world application. In both quantitative covariate designs and complex treatment design simulations, our method consistently outperformed established tools like limma, …

From Classroom To Content Creator: Leadership Practices And Identities Of Female Science Teachers On Tiktok, Rachel M. Benzoni

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This qualitative multiple case study investigates how four secondary science teachers use TikTok to advocate for science education and how content creation shapes their professional identities as leaders. Using interviews and video content with a framework integrating constructivist leadership, Leader Identity Construction Theory (LICT), and the Social Change Model (SCM), findings show participants enacted leadership outside formal roles through distributed and relational practices leveraging social media's affordances. Five themes emerged from the analysis: (1) Reconceptualizing Teacher Leadership on Social Media, (2) Leadership Through Equity-Driven Practice, (3) Constructing and Leading in Online Professional Learning Communities, (4) Forming and Negotiating Identities in …

Distributional Records Of Blanding’S Turtles (Emydoidea Blandingii) In Nebraska, Sam Thede, Dan Fogell, Keith Geluso

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Blanding’s Turtle (Emydoidea blandingii) is a species of concern in North America as many populations have declined across its distribution. Environmental factors associated with alteration of natural ecosystems have played a role in declines leading to many isolated populations. Most populations exist in the Great Lakes region with a number of outlying populations, such as Nebraska. Understanding the current distribution of the species will facilitate regional management strategies to protect this species into the future. In Nebraska, Blanding’s Turtles were known from 23 counties prior to this study. Herein, we report on eight new county records, five (Blaine, …

Simulated Walleye Responses To Various Harvest Regulations In A Nebraska Reservoir, Mikael Ranta, Melissa Wuellner, Keith D. Koupal

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Recreational fishing provides sociological and economic benefits, and fish populations are managed by state agencies to meet angler expectations. One of the most popular species in Midwest reservoirs are walleye (Sander vitreus), and most of these fisheries have established restrictions on the number and sizes of fish harvested. Regulations are set based on population structure and dynamics and management goals, but often agencies have incomplete information needed to establish regulations. Predictive models can provide insight on population responses and inform managers of the tradeoffs between angler restrictions and population sustainability. Lake McConaughy, Nebraska, supports a popular walleye fishery. …

A New Species Of Viscachataenia (Cestoda: Anoplocephalidae) From The Southern Mountain Viscacha, Lagidium Viscacia (Hystricomorpha: Chinchillidae), In Bolivia, Terry R. Haverkost, Scott L. Gardner

MANTER: Journal of Parasite Biodiversity

Anoplocephalid cestodes collected from the southern mountain viscacha, Lagidium viscacia, in Boliva in 1986 are here examined, and a new species of Viscachataenia is described. The new species has numerous body measurements that are larger than the existing species, V. quadrata, but the eggs and corresponding structures of the new species are all smaller than those of V. quadrata.

Update To: Advancing Butterfly Systematics Through Genomic Analysis, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick Grishin

The Taxonomic Report of the International Lepidoptera Survey

In this update, we propose (type species or type localities in parentheses): Lochris Grishin, nom. nov. (Lasaia oileus Godman, 1903; Lepidoptera: Riodinidae) as a new substitute name for Locris Grishin, 2025 preoccupied by Locris Stål, 1866 (Cercopis rubra Fabricius, 1794; Hemiptera: Cercopidae), 5 new species, and 5 new subspecies: Emesis (Mandania) mandarina Grishin, sp. n. (Brazil: Santa Catarina) and Emesis (Mandania) mandela Grishin, sp. n. (Venezuela, Carabobo) in Riodinidae Grote, 1895 (1827); others in Hesperiidae Latreille, 1809: Telegonus (Rhabdoides) flavifimbro Grishin, sp. n. (Colombia), Urbanus (Urbanoides) dolus Grishin, sp. n. (Colombia: …

Groundwater Flooding On Highways In The Nebraska Sandhills: Applying Remote Sensing, Precipitation And Groundwater Modeling To Determine Depth, Cause And Frequency, Aaron R. Mittelstet

Nebraska Department of Transportation: Research Reports

Climate change significantly impacts infrastructure sustainability, particularly through shifts in precipitation patterns, intensity, and duration. These precipitation dynamics may increase the occurrence of surface water and groundwater flooding. Groundwater in the Nebraska Sand Hills (NSH), including the thickest portions of the High Plains Aquifer, extends close to the land surface in interdunal areas, making the NSH vulnerable to groundwater flooding. Recent events involving heavy precipitation, snow melt, and rising groundwater levels have caused prolonged highway flooding, disrupting transportation networks. This study estimates groundwater flood inundation depth, duration and frequency in the highways of NSH using remote sensing techniques and groundwater …

Geophysical Tools For Agricultural Management: Trends, Challenges, And Opportunities, Sophia Becker, Trenton Franz, Yufeng Ge, Joe Luck, Derek M. Heeren

School of Natural Resources: Faculty Publications

Agrogeophysics is a convergence of proximal soil sensing and hydrogeophysics in which geophysical methods are used to describe soil patterns and dynamics that shape agronomic management (including precision agriculture). To fully realize its potential for optimizing agricultural production, current barriers and targets for future agrogeophysics research must be identified. In this review, we compare the trajectory of agrogeophysics within peer-reviewed literature, patents, and the US university extension literature and examine the current challenges and opportunities for supporting agricultural production and sustainability with agrogeophysical tools. We conducted a repeatable search of Web of Science and Scopus for seven geophysical methods (electromagnetic …

Ai Tools In Natural Resources And Environmental Systems For The Classroom, Research, Extension And Industry, Derek M. Heeren, C. T. Agouridis, Debabrata Sahoo, Isaya Kisekka, Trisha L. Moore

Department of Agricultural and Biological Systems Engineering: Presentations and White Papers

This white paper synthesizes a series of panel insights on AI adoption across education, Extension, research and industry contexts within natural resources and environmental systems. It emphasizes that while advanced machine learning and generative AI introduce structural shifts in autonomy, scale, and cognitive augmentation, their value lies in augmenting, not replacing, human expertise. Applied tool examples include decision‑support systems for rural water operators, HAB‑diagnosis apps integrating image classification and natural‑language guidance, an irrigation educational chatbot tailored to user background, and sensor‑driven orchard AI for light interception estimation and data gap filling. A recurring design imperative involves co‑development with end users, …

Water Current, Volume 57, No. 2, Summer 2025

Water Current Newsletter

No abstract provided.

Soil Health In Nebraska: Exploring Practitioners' Needs And Insights From A Long-Term Organic Farm, Ingrids Isabel Mata Vigil

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Soil health is foundational to sustainable agriculture, environmental resilience, and long-term food security. Yet, the adoption of soil health assessments remains limited, often perceived as too technical, costly, or difficult to implement in real-world contexts. To better understand these challenges, the first chapter presents findings from a statewide survey of 41 soil health practitioners in Nebraska, including farmers, extension educators, NRCS staff, and conservation professionals. Respondents highlighted the need for simpler, more accessible, and context-specific tools for soil health assessment that help practitioners make informed decisions aligned with their management goals. Complementing these insights, the second chapter includes an independent, …

Evaluating The Effects Of Row Spacing, Legume Intercropping, Fertilizer Source, And Fertilizer Timing On Intermediate Wheatgrass In Eastern Nebraska, Madeline M. Johnston

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Kernza^® is the trademarked name of the perennial crop intermediate wheatgrass (Thinopyrum intermedium). In addition to its potential for dual-use as a grain and forage crop, Kernza is marketed to provide needed environmental services by increasing crop biodiversity, sequestering soil carbon, and reducing nitrate leaching. However, more work is needed in cultivar selection and crop management to increase total grain yields and prevent long-term grain yield decline. Furthermore, research in quantifying and understanding Kernza’s ability to affect soil properties and water dynamics is limited.

Two field experiments were conducted at the Eastern Nebraska Research Extension and Education …

Evaluating Biodegradable Mulch As A Soil Conservation Tool And The Impact On Soil Properties And Yield In Soybean (Glycine Max) Cropping Systems In Eastern Nebraska, Ana Clara Gomes

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

This study, conducted during the 2024 growing season, evaluated short-term effects of soil management practices on greenhouse gas (GHG) emissions, soil microclimate, nitrogen dynamics, weed suppression, and soybean (Glycine max) yield. In addition to conventional tillage and no-till, this research included cereal rye (Secale cereale) cover cropping and a novel sprayable biodegradable mulch (BioWRAP®) to assess emerging strategies for sustainable soybean systems under contrasting moisture regimes.

Field trials were established at two eastern Nebraska locations: Havelock (dryland, silty clay loam) and ENREEC (irrigated, clay loam). A strip-block randomized design with four replications tested six soil management …

Biocomputing Approach To Modeling And Modulating Calcium Signaling, Sehee Sun

School of Computing: Dissertations, Theses, and Student Research

Biocomputing is an emerging field that seeks to perform computational tasks using biological substrates and processes. Unlike conventional computing systems based on silicon hardware, biocomputing leverages the parallelism, energy efficiency, and complex dynamics of living systems. Among various cellular mechanisms, calcium (Ca2+) signaling stands out as a central regulator of diverse biological functions, offering a promising basis for programmable logic and control in living cells.

This thesis introduces a novel framework for modeling and modulating Ca2+ dynamics using biologically inspired Boolean logic circuits. Specifically, we propose the Ca2+ Boolean Logic (CaBL) model, in which Ca2+ fluxes and interactions are abstracted …

Cazyme Gene Cluster Diversity In Human Gut Microbiome, Yi Xing

Department of Food Science and Technology: Dissertations, Theses, and Student Research

In gut microbiome research, carbohydrate-active enzyme gene clusters (CGCs) have emerged as key functional units for understanding microbial glycan degradation. Unlike taxonomic or broad pathway annotations, CGCs offer gene-cluster-level resolution and capture substrate-specific microbial functions. However, their diversity and distribution in relation to host metabolic phenotypes, such as obesity, remain poorly characterized. This study tests the hypothesis that the composition and abundance of fiber-targeting CGCs vary between obese and healthy human gut microbiomes, reflecting distinct microbial carbohydrate utilization strategies. To examine this, we constructed a high-quality reference CGC dataset comprising 94,019 clusters from the Unified Human Gastrointestinal Genome and profiled …

Response Of Soybean To Variable Irrigation Levels In Eastern Nebraska Using The Aquacrop Model, Anmol Singh

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

AquaCrop was calibrated and validated for soybean [Glycine max (L.) Merr.] using 19 irrigation treatments from five years using data from field experiments. The model accurately simulated canopy cover (CC), soil water content (SWC), and grain yield, with overall validation nRMSE values of 12%, 7%, and 7%, respectively. The overall validation nRMSE for SWC in individual 30-cm soil layers was comparatively higher, at 19%. The model was subsequently applied for long-term simulations (2010–2024) to estimate soybean yield and water requirements for two dominant soil types, Yutan silty clay loam and Tomek silt loam under three irrigation levels - rainfed, …

Overcoming Maternal Antibody Interference In Swine Influenza: Advancing Dna Vaccine Strateies For Enhanced Immune Protection In Piglets, Danh Cong Lai

School of Veterinary and Biomedical Sciences: Dissertations, Theses, and Student Research

Maternally derived antibodies (MDAs) play a vital role in protecting neonates from infectious diseases, but their presence at the time of vaccination can interfere with vaccine-induced immune responses, thereby reducing vaccine effectiveness. MDA interference has been documented in pigs vaccinated with whole inactivated virus (WIV) vaccines against swine influenza A virus (IAV). In this thesis, we evaluated the efficacy of a lipid nanoparticle encapsulated DNA (LNP-DNA) vaccine against swine IAV in the presence and absence of MDAs, comparing it to a WIV vaccine. In MDA-negative piglets, both the LNP-DNA and WIV vaccines induced strong immune responses and effectively prevented the …

The Effect Of Individual Variation On Epidemiological Dynamics: From Super-Spreaders To Landscapes Of Risk, Alexis Shannon Beagle

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Individuals that make up a population always display some level of variation between members. At the smallest scale, individuals always maintain genetic variation, but variation continues to arise at other scales of biological organization from physiological or immunological variation within individuals to variation in behavior between individuals that can be both genetically and environmentally mediated. The role of individual variation is particularly important in the context of infectious diseases because there is strong evidence that infections are highly heterogenous, indicating that patterns of individual variation drive a significant portion of the epidemiological patterns we observe. Individual variation leads to heterogeneity …

Use Of High-Throughput Phenomics With And Without Fungicide As A Wheat Breeding Tool, Gerardo Ivan Rivera Collazo

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Wheat (Triticum aestivum) is an important food staple for many countries around the world and current consumption and production data demonstrate a production deficit. Breeders are challenged to help close this gap in production by selecting better cultivars with improved yields. Several methods aim to accelerate the breeding process to reduce the time required for releasing an elite variety. One of the main breeding bottlenecks is the lack of fast and reliable phenotypic data acquisition that could dissect physiological and morphological plant data. High-throughput remote sensing could have the potential to reduce this bottleneck by streamlining data acquisition, …

A Study Of Ice And Fire: Environmental Change Impacts On Lakes Of The Nebraska Sandhills, Daniel Gschwentner

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

The Nebraska Sandhills contain thousands of shallow, groundwater-fed lakes. These lakes are extremely sensitive to environmental and climatic changes due to their isolated hydrological setting and small volume. Building on previous work on the hydrology, geochemistry and long-term climate response of Sandhill lakes, my research considers how ecosystem processes such as primary production, nutrient limitation and water quality respond to short-term environmental and climatic change. In my first data chapter, I highlight that Sandhill lakes are nitrogen (N) but not phosphorus (P) limited and that N:P ratios are poor predictors of nutrient limitation status in Sandhill lakes. In my second …

Catching A Fever: A Comparison Of Vachellia Xanthophloea Populations In The Limpopo And Luvuvhu River Floodplains Of The Makuleke Contractual Park, Kianie B. David

School of Natural Resources: Dissertations, Theses, and Student Research

This study investigates patterns of stand structure regeneration, growth characteristics, and coarse woody debris (CWD) patterns in Vachellia xanthophloea (fever tree) stands within the Makuleke Contractual Park (MCP), a semi-arid savanna system in northern Kruger National Park (KNP), South Africa. Fieldwork was conducted across two stand types: a monospecific fever tree stand in Rietbok Vlei and a mixed-species stand in the Western Nhlangaluwe Floodplain where fever tree is established with Faidherbia albida (ana tree). Data were collected from 20 total 1/4-acre (1,011 m²) circular plots between both stands in 2024 and 2025, including seedling root collar diameter (RCD), …

Bioenergy Crop Production: Implications For Grassland Bird Communities In Southwestern Nebraska, Grace E. Schuster

School of Natural Resources: Dissertations, Theses, and Student Research

Biofuel and bioenergy systems are components of most climate stabilization pathways to reduce greenhouse gas emissions and limit global warming. Currently, corn (Zea mays) is the predominant feedstock used for bioenergy production in the United States. However, widespread production of this monoculture crop has resulted in many negative environmental impacts. The most notorious impact has been the loss of grassland habitat due to agriculture expansion which has had detrimental effects on wildlife that depend on grassland habitat. One such group, grassland birds, has faced steeper, more consistent, and more widespread declines than any other avian guild. Therefore, strategies …