Digital Commons Network^™

Closed Canopies Crowd Out Bats: Planning Artificial Gap Creation, Alana Simmons

Environmental Science and Management Professional Master's Project Reports

Managed even-aged forest stands often lack small to medium-sized canopy gaps that help to increase habitat diversity and, in turn, wildlife diversity. A large body of literature suggests that this habitat diversity is especially important for bat communities and that bat activity and diversity can be depressed in closed canopy, even-aged stands. Open- and edge-adapted bats have evolved specific wing morphologies and echolocation call structures that make them reliant upon forest gaps as energy efficient foraging grounds in otherwise structurally cluttered forests. Artificial gap creation projects that increase habitat diversity have been implemented to benefit ungulates, and a similar approach …

Expanding Temperature Sensing For The Orion Bms 2, Samuel J. Parker

University Honors Theses

Formula SAE (FSAE) is an annual collegiate design competition that takes place across the globe. Portland State University’s team, Viking Motorsports, was committed to designing an Electric Vehicle (EV) for the 2021 FSAE competition. The team designed a completely custom lithium-ion cell battery that is managed by an Orion BMS 2 battery management system. The FSAE rulebook requires a robust temperature monitoring system for any EV power supply. The Orion BMS 2 can only directly collect data from eight temperature sensors, which is not enough to meet FSAE regulation. However, the BMS can be configured to monitor many more sensors …

Weak Coupling Among Barrier Loci And Waves Of Neutral And Adaptive Introgression Across An Expanding Hybrid Zone, Mitchell Cruzan, Pamela G. Thompson, Nicolas Alexander Diaz, Elizabeth C. Hendrickson, Katie R. Gerloff, Katie A. Kline, Hannah M. Machiorlete, Jessica Persinger

Biology Faculty Publications and Presentations

Hybridization can serve as an evolutionary stimulus, but we have little understanding of introgression at early stages of hybrid zone formation. We analyze reproductive isolation and introgression between a range-limited and a widespread species. Reproductive barriers are estimated based on differences in flowering time, ecogeographic distributions, and seed set from crosses. We find an asymmetrical mating barrier due to cytonuclear incompatibility that is consistent with observed clusters of coincident and concordant tension zone clines (barrier loci) for mtDNA haplotypes and nuclear SNPs. These groups of concordant clines are spread across the hybrid zone, resulting in weak coupling among barrier loci …

Geodetic Constraints On A 25-Year Magmatic Inflation Episode Near Three Sisters, Central Oregon, Robert Mccaffrey, Michael Lisowsk, Charles W. Wicks, Daniel Dzurisin

Geology Faculty Publications and Presentations

Crustal inflation near the Three Sisters volcanic center documented since the mid-1990s has persisted for more than two decades. We update past analyses of the event through 2020 by simultaneously inverting InSAR interferograms, GPS time series, and leveling data for time-dependent volcanic deformation source parameters. We explore several source models to estimate how the deformation rate varied through time and to identify parameters that can reproduce measured deformation. Our preferred model is a Mogi source 4.1 km below sea level (5.9 km below the surface) about 5 km west of the summit of South Sister. Inflation started in late 1995 …

Proximal Policy Optimization For Radiation Source Search, Philippe Erol Proctor, Christof Teuscher, Adam A. Hecht, Marek Osiński

Electrical and Computer Engineering Faculty Publications and Presentations

Rapid search and localization for nuclear sources can be an important aspect in preventing human harm from illicit material in dirty bombs or from contamination. In the case of a single mobile radiation detector, there are numerous challenges to overcome such as weak source intensity, multiple sources, background radiation, and the presence of obstructions, i.e., a non-convex environment. In this work, we investigate the sequential decision making capability of deep reinforcement learning in the nuclear source search context. A novel neural network architecture (RAD-A2C) based on the advantage actor critic (A2C) framework and a particle filter gated recurrent unit for …

Building A Biomechanical Model Of A Rat Forelimb, Joshua Nathaniel Eric Mak

Dissertations and Theses

This paper presents a biomechanical model of the rat forelimb to test theories of determining viscoelastic muscle parameters. Several biomechanical models of rat hindlimbs have been developed and have explored the effects of multi-muscle control during locomotion. The forelimb model uses two ball-and-socket joints to model clavicle and scapula movement. A third ball-and-socket joint is used at the shoulder and two hinge joints are used at the elbow and wrist. Scapula motion is further constrained by muscle and spring elements. Each forelimb has 11 degrees of freedom, and 23 Hill-type muscles. The model has been created in Animatlab, which includes …

Major Controls On Diagenesis In The Martin Bridge Formation: Wallowa Mountains, Oregon, Jane Lyra Eisenberg

Dissertations and Theses

Diagenetic alteration in carbonates has long frustrated scientists who wish to use their chemistry and/or texture to understand conditions at the time of deposition. Though indicators of diagenesis are well documented, their interpretation is not always straightforward. Despite the large volume of research on the subject, the positive identification and interpretation of diagenesis is a source of ongoing debate in the scientific community.

The goal of this study is to better understand the timing of, and controls on, diagenetic alteration in the Martin Bridge Formation (MBF), a Triassic-aged limestone that was altered following deposition. Thirty-nine samples of MBF with differing …

Improved Predictive Modeling Techniques For Non-Linear Solder Material Behavior, Arman Millian Ahari

Dissertations and Theses

Accurate prediction of fatigue life of solder joints in electronic packaging applications becomes of critical importance as semiconductor device technology and manufacturing constraints grow in complexity. To gain visibility on IC device performance and reliability, thermo-mechanical simulation is performed based on a unified, viscoplastic material model, which is dependent on nine parameters.

In this study, an improved method of Anand parameter extraction, which involves curve-fitting non-linear experimental stress data, is proposed to improve the accuracy of numerical predictions for solder reliability. Theoretical equations for uni-axial stress-strain response and creep response are derived, then details on their relevance to experimental and …

The Return To Anisotropy Across A Jet In Crossflow, Gregory P. Sakradse

Dissertations and Theses

With data from experiments on a jet of air emitting from an orifice flush with the floor of a wind tunnel providing a transverse flow, analysis is conducted to extract information about the state of anisotropy in the Reynolds stress tensor. Inflow velocities are modulated across two distinct turbulence intensity regimes while holding jet exit conditions constant, providing an opportunity to isolate effects of both jet to crossflow velocity ratio, r and the effects of the turbulence carried by the crossflow. Anisotropy in the Reynolds stress tensor is examined through anisotropy invariant maps and evolution of the function F, …

Mid-Miocene Icelandites Of Eastern Oregon: Petrogenesis And Magmatic Lineage To Main-Phase Crbg With Constraints On Storage Sites, Melissa Aileen Carley

Dissertations and Theses

The La-Grande Owyhee eruptive axis is a mid-Miocene to Pliocene ~300 km long volcanic belt located at the eastern margin of the Columbia River Basalt Group (CRBG) in Oregon. Within this volcanic belt there are numerous vents that have produced a large volume of petrologically diverse rocks ranging from the tholeiitic flood basalts of the CRBG to rhyolitic tuffs of caldera complexes such as the Lake Owyhee Volcanic field. Icelandites, which are iron rich andesites, are known to occur in association with silica saturated to oversaturated tholeiitic basalts as a minor part of continental flood basalt volcanism. This study investigates …

Convergence Analysis Of Some Tent-Based Schemes For Linear Hyperbolic Systems, Dow Drake, Jay Gopalakrishnan, Joachim Schöberl, Christoph Wintersteiger

Mathematics and Statistics Faculty Publications and Presentations

Finite element methods for symmetric linear hyperbolic systems using unstructured advancing fronts (satisfying a causality condition) are considered in this work. Convergence results and error bounds are obtained for mapped tent pitching schemes made with standard discontinuous Galerkin discretizations for spatial approximation on mapped tents. Techniques to study semidiscretization on mapped tents, design fully discrete schemes, prove local error bounds, prove stability on spacetime fronts, and bound error propagated through unstructured layers are developed.

Selenium Probes For The Detection Of Thioredoxin Reductase Activity, Tendai Joseph Mafireyi

Dissertations and Theses

The identification and quantification of proteins and enzymatic activity in living tissues frequently requires the use of invasive procedures such as biopsy. These techniques can inhibit measurements of protein levels in real-time, and the disruption of tissue can lead to the loss of important information concerning the spatial distribution and differential activities in various cell types. The use of small organic fluorescent probes that rely on activation or accumulation within a tissue embody robust methods of detection that address these issues. This dissertation describes the design, synthesis and evaluation of fluorescent probes that can detect the enzyme thioredoxin reductase (TrxR). …

Being Against The Black: Bad Faith And Anti-Black Racism (Guest Editors' Introduction), Amir A. Gilmore, Latoya Brackett, Davida Sharpe-Haygood

Northwest Journal of Teacher Education

As a special journal issue, the guest editors continued their study on (anti)blackness within K-12 schooling and teacher preparation programs. Through the introduction’s white space, the guest editors attempt to theorize and center (anti)Blackness. Moreover, they existentially critique the “ordinary” assumptions about who can be a human and explain why Black existence continues on despite their collective suffering. The introductory article is organized as follows: (1) a thorough explanation of bad faith and antiblackness, (2) an illustration of antiblackness’ manifestations in K-12 schooling, and (3) the importance of using jazz as an analytic frame to curate the contributors’ scholarship.

Black Liberation In Teacher Education: (Re)Envisioning Educator Preparation To Defend Black Life And Possibility, Justin A. Coles, Darrius Stanley

Northwest Journal of Teacher Education

Current configurations of teacher education programs are insufficient in attracting and producing teachers equipped to teach through the permanence of antiblackness, instead still relying on race-neutral or color-evasive pedagogies that perpetuate the misrecognition of antiblackness. As evident by the sustained inequities experienced by Black children and the routine marginalization of Black (teacher) educators in the field, we recognize that teacher education programs, and subsequently P-12 classrooms, are not designed nor equipped to reduce the harm caused by persistent anti-Black racism. Despite the ways Blackness is derided and invisibilized in educator preparation, Black students, families, and communities have long countered anti-Black …

Reflections On The Politics Of Professionalism: Critical Autoethnographies Of Anti-Blackness In The Ela Classroom, Stephanie P. Jones, Robert P. Robinson

Northwest Journal of Teacher Education

As Black educators, we are implanted with testimonies of how our pedagogies remained in close proximity to whiteness. We employ antiblackness and critical race theory frameworks. Through what we call vignettes of repair we address ourselves and our students to first, repair the harm we caused and second, to engage in collective witnessing that makes room for (re)claiming and (re)membering our own knowledge. From our critical reflection, we propose that teacher educators engage in a similar practice for their prospective teachers.

If You Are Not Ready, Then Step Aside: Intentionally Centering The Black Male Body In Teacher Education, Cherrel Miller Dyce, Julius Davis

Northwest Journal of Teacher Education

The conditions of Black male students in K-12 schools have been well-documented by scholars and clearly illustrate institutionalized anti-Black maleness that continues to go unaddressed or, in some cases, never addressed in most educator preparation programs and school systems in the U.S. We call for the centering of Black male bodies in teacher education and offer Afrocentric Assessment Mattering Pathways (AAMP) for guidance for intentionally centering the Black male body in teacher education: 1) critical anti-black self-reflection, 2) Afrocentric curricular change using Black history, and 3) engaging in off-campus Afrocentric environments.

Forest Fire Effects On The Temporal Variability Of Landscape Snow Albedo Relative To Burn Severity, Max Gersh

Dissertations and Theses

Snow-water storage is decreasing, while forest fires are increasing in duration, size, frequency, and intensity, due to climate change. Most forest fires occur in the seasonal snow zone, altering snow mass and energy balance for many years following fire. Following forest fires, Surface snow albedo (SSA) decreases, as light absorbing particles (LAP), particularly black carbon (BC) produced in forest fires get deposited throughout the snowpack, altering snowpack energy balance driving earlier snowmelt in burned forests. While SSA decreases, landscape snow albedo (LSA) increases following fire, as more of the snow-covered surface becomes visible beneath the burned forest canopy, brightening the …

Efficient Neuromorphic Algorithms For Gamma-Ray Spectrum Denoising And Radionuclide Identification, Merlin Phillip Carson

Dissertations and Theses

Radionuclide detection and identification are important tasks for deterring a potentially catastrophic nuclear event. Due to high levels of background radiation from both terrestrial and extraterrestrial sources, some form of noise reduction pre-processing is required for a gamma-ray spectrum prior to being analyzed by an identification algorithm so as to determine the identity of anomalous sources. This research focuses on the use of neuromorphic algorithms for the purpose of developing low power, accurate radionuclide identification devices that can filter out non-anomalous background radiation and other artifacts created by gamma-ray detector measurement equipment, along with identifying clandestine, radioactive material.

A sparse …

Delineating Conservation Areas For Cohabiting Species: An Example Of Vernal Pond Conservation From Fort Stewart In Georgia, United States, Yicheng Wang, Hayri Önal, Sahan T. M. Dissanayake

Economics Faculty Publications and Presentations

Military installations are valuable in global biodiversity conservation as they secure representative ecosystems from land conversion and protect many threatened or endangered species. Selecting suitable areas for biodiversity conservation within military installations is a challenging problem as this must not impede military training activities. The issue gets more complicated when considering multiple cohabiting species in a metacommunity with species dependency. In this paper, we present an example for the conservation of two cohabiting species, Gopher Tortoise (GT) and Gopher Frog (GF), located within the boundaries of a military installation, Fort Stewart, Georgia, United States. The GF depends on both locations …

Road Work Ahead: Using Deep Neural Networks To Estimate The Impacts Of Work Zones, Abbas Rashidi, Ali Hassandokht Mashhadi

TREC Project Briefs

Roadside construction - be it a detour, a closed lane, or a slow weave past workers and equipment - work zones impact traffic flow and travel times on a system-wide level. The ability to predict exactly what those impacts will be, and plan for them, would be a major help to both transportation agencies and road users. Funded by the National Institute for Transportation and Communities, the latest Small Starts project led by Abbas Rashidi of the University of Utah introduces a robust, deep neural network model for analyzing the automobile traffic impacts of construction zones.

Evaluating Mobility Impacts Of Construction Work Zones On Utah Transportation System Using Machine Learning Techniques, Ali Hassandokht Mashhadi, Abbas Rashidi

TREC Final Reports

Construction work zones are inevitable parts of daily operations at roadway systems. They have a significant impact on traffic conditions and the mobility of roadway systems. The traffic impacts of work zones could significantly vary due to several interacting factors such as work zone factors (work zone location and layout, length of the closure, work zone speed, intensity, and daily active hours); traffic factors (percentage of heavy vehicles, highway speed limit, capacity, mobility, flow, density, congestion, and occupancy); road factors (number of total lanes, number of open lanes, and pavement grade and condition); temporal factors (e.g., year, season, month, weekday, …

Catastrophic Beach Sand Losses Due To Erosion From Predicted Future Sea Level Rise (0.5–1.0 M), Based On Increasing Submarine Accommodation Spaces In The High-Wave-Energy Coast Of The Pacific Northwest, Washington, Oregon, And Northern California, Usa, Curt D. Peterson, Don Joseph Pettit, Kara E. P. Kingen, Sandy Vanderburgh, Chuck Rosenfeld

Geology Faculty Publications and Presentations

The U.S. Pacific Northwest (PNW) coastline (1000 km) has been analyzed for conditions that could impact beach erosion from potential near-future (100 year) sea level rise (SLR). Heavy mineral analysis of river, beach, and shelf samples (n = 105) establish the sources of the beach deposits. River bedload discharge and intervening estuarine sinks for river sand supplies (n = 31) were normalized to the one century time interval. Twenty-six subcell beaches (657 km in combined length) were surveyed (153 profiles) for beach sand widths (20–412 m) and sand cross-sectional areas (20–1810 m2 ) above wave-cut platforms and/or 0 m tidal …

Rotten Green Tests In Java, Pharo And Python, Vincent Aranega, Julien Delplanque, Matias Martinez, Andrew P. Black, Stéphane Ducasse, Anne Etien, Christopher Fuhrman, Guillermo Polito

Computer Science Faculty Publications and Presentations

Rotten Green Tests are tests that pass, but not because the assertions they contain are true: a rotten test passes because some or all of its assertions are not actually executed. The presence of a rotten green test is a test smell, and a bad one, because the existence of a test gives us false confidence that the code under test is valid, when in fact that code may not have been tested at all. This article reports on an empirical evaluation of the tests in a corpus of projects found in the wild. We selected approximately one hundred mature …

Rhyolite Stratigraphy Along Succor Creek: Insights Into The Eruptive History Of The Three Fingers And Mahogany Mountain Volcanic Field, Cassandra Caryl Black

Dissertations and Theses

The Mahogany Mountain and Three Fingers calderas with their associated tuffs, the tuff of Leslie Gulch and tuff of Spring Creek, respectively, were the centerpiece of a larger rhyolite center that developed in response to Columbia River Basalt volcanism as numerous other mid Miocene rhyolite centers in a corridor from Baker City in the north to northern Nevada. Previous studies suggest a two caldera model, while others advocated for a single large caldera producing solely the tuff of Leslie Gulch. This study refines the eruptive stratigraphy along the northeastern margin of this rhyolite field with important implications for the entire …

Investigation Of Environmental-Friendly, Membraneless Hydrogen Peroxide Fuel Cells, Bao Nguyen

Dissertations and Theses

Human-induced climate change is one of the biggest threats to humanity in the 21^st century. This is caused by the increase in greenhouse gas concentrations in the Earth's atmosphere. The burning of fossil fuels is the primary cause of climate change. This problem can be addressed by replacing fossil fuels with fuel sources that have clean by-products and are cost-effective. For the last few decades, hydrogen (H₂) has been extensively studied as an alternative to carbon-based fossil fuels. Currently, H₂ still has many shortcomings for commercial applications. The photocatalytic production of H₂ still suffers from …

Climate Change Will Increase The Vector Capacity Of The Aedes Aegypti In South America: A Systematic Map, Liliana I. Maz, Richard S. Lockwood

PSU McNair Scholars Online Journal

Tropical infectious diseases such as dengue, chikungunya, and Zika affect millions of people annually in all regions of the world. The disease burden propagated by these arboviruses has rapidly increased in recent decades due to the range expansion of their shared vector, the Aedes aegypti mosquito. The IPCC has predicted a global increase in temperatures of 1.4-5.8°C over the next century; understanding how that will affect the vector capacity of the Aedes aegypti is essential for public health planning. This paper examined findings from a systematic map of the current state of research on this increasingly important influence on infectious …

Exploring How Antecedent Precipitation Amount And The Effects Of Covid-19 Affect Stormwater Runoff Quality Along Urban Gradients, Daniel Ramirez, Katherine Gelsey

REU Final Reports

Stormwater runoff quality is affected by a multitude of factors including surrounding land characteristics, human activities, and antecedent precipitation amounts. We explore how seasonal and variable precipitation affect E. Coli, total suspended solids, nitrogen-nitrate, orthophosphate, lead, and zinc concentrations in Portland, OR, USA. Correlation analysis was conducted between the pollutant concentrations and antecedent rainfall each sample site received for the previous 1, 3, 5, 7, and 30 days from when the sample was taken. We ran Mann-Whitney tests to determine if the levels of the pollutants were statistically different between the wet season and the dry season. We found that …

Balanced Polymorphism Fuels Rapid Selection In An Invasive Crab Despite High Gene Flow And Low Genetic Diversity., C K. Tepolt, E D. Grosholz, Catherine E. De Rivera, G M. Ruiz

Environmental Science and Management Faculty Publications and Presentations

Adaptation across environmental gradients has been demonstrated in numerous systems with extensive dispersal, despite high gene flow and consequently low genetic structure. The speed and mechanisms by which such adaptation occurs remain poorly resolved, but are critical to understanding species spread and persistence in a changing world. Here, we investigate these mechanisms in the European green crab Carcinus maenas, a globally distributed invader. We focus on a northwestern Pacific population that spread across >12 degrees of latitude in 10 years from a single source, following its introduction 1,500 km, we examine genetic structure using 9,376 Single Nucleotide Polymorphisms (SNPs). We …

Modeling Renal Function During Pregnancy, Christina A. Valtierra

REU Final Reports

The main goal of this research project is to build a computational model that illustrates the main processes in renal function during pregnancy. The analysis of how pregnancy affects all the factors that take place within the kidney will allow for a better understanding of how pathologies like proteinuria, hypertension, and glomerular endotheliosis develop. This model is a small part of a more complex model that showcases the complete pathophysiology of preeclampsia.

Simulating Dislocation Densities With Finite Element Analysis, Ja'nya Breeden, Dow Drake, Saurabh Puri

REU Final Reports

A one-dimensional set of nonlinear time-dependent partial differential equations developed by Acharya (2010) is studied to observe how differing levels of applied strain affect dislocation walls. The framework of this model consists of a convective and diffusive term which is used to develop a linear system of equations to test two methods of the finite element method. The linear system of partial differential equations is used to determine whether the standard or Discontinuous Galerkin method will be used. The Discontinuous Galerkin method is implemented to discretize the continuum model and the results of simulations involving zero and non-zero applied strain …