Digital Commons Network^™

Finding Lonely Routes For Runners And Bikers, Ethan T. Spicher

REU Final Reports

With COVID-19 raging around the world, personal health is even more important to a lot of people. One way to maintain good physical and mental health is to exercise according to Deslandes [2]. When exercising it may be important to make sure that you are running/biking on trails that are less populated than others, as well as taking into account the distance. This can be solved by creating an algorithm that allows the user to choose the starting and end point, and the algorithm will then find the optimal path between the two points with the distance and popularity of …

Digitally Reporting Trail Obstructions In Forest Park, Colton S. Maybee

REU Final Reports

The inclusion of technology on the trail can lead to better experiences for everyone involved in the hobby. Hikers can play a more prominent role in the maintenance of the trails by being able to provide better reports of obstructions while directly on the trail. This paper goes into the project of revamping the obstruction report system applied at Forest Park in Portland, Oregon. Most of my contributions to the project focus on mobile app development with some research into path planning algorithms related to the continuations of this project.

Modeling The Effect Of The Covid-19 Pandemic On Azithromycin Prescription In General Practices Across The Uk, Oluwasegun Isaac Daramola

altREU Projects

In the early months of the COVID-19 pandemic, it was reported that some antibiotics were prescribed as a remedy for viral treatment and prophylaxis based on non-randomized, uncontrolled short clinical trials. A major antibiotic consulted being Azithromycin; a broad-spectrum macrolide selected based on its immunomodulatory effects in chronic inflammatory lung diseases, with a seasonal prescription increase of 21.5% in March 2020 compared to March 2019.

To analyze the effect and possible antimicrobial resistance impact of the pandemic on Azithromycin prescription across general practices in the United Kingdom (UK), this study uses a time series decomposition modeling method to compare a …

Forest Park Trail Monitoring, Adan Robles, Colton S. Maybee, Erin Dougherty

REU Final Reports

Forest Park, one of the largest public parks in the United States with over 40 trails to pick from when planning a hiking trip. One of the main problems this park has is that there are too many trails, and a lot of the trails extend over 3 miles. Due to these circumstances’ trails are not checked frequently and hikers are forced to hike trails in the area with no warnings of potential hazards they can encounter. In this paper I researched how Forest Park currently monitors its trails and then set up a goal to solve the problem. We …

Spatial Analysis Of Landscape Characteristics, Anthropogenic Factors, And Seasonality Effects On Water Quality In Portland, Oregon, Katherine Gelsey, Daniel Ramirez

REU Final Reports

Urban areas often struggle with deteriorated water quality as a result of complex interactions between landscape factors such as land cover, use, and management as well as climatic variables such as weather, precipitation, and atmospheric conditions. Green stormwater infrastructure (GSI) has been introduced as a strategy to reintroduce pre-development hydrological conditions in cities, but questions remain as to how GSI interacts with other landscape factors to affect water quality. We conducted a statistical analysis of six relevant water quality indicators in 131 water quality stations in four watersheds around Portland, Oregon using data from 2015 to 2021. Indiscriminate of station …

Client Access Feature Engineering For The Homeless Community Of The City Of Portland, Oswaldo Ceballos Jr

altREU Projects

Given the severity of homeless in many cities across the country, the project at hand attempts to assist a service provider organization called Central City Concern (CCC) with their mission of providing services to the community of Portland. These services include housing, recovery, health care, and jobs. With many different types of services available through the works of CCC, there exists an abundance of information and data pertaining to the individuals that interact with the CCC service system. The goal of this project is to perform an exploratory analysis and feature engineer the existing datasets CCC has collected over the …

Mechanistic Investigation Of Neuropeptide S-Nitrosylation By Nitric Oxide Moieties: A Kinetic And Thermodynamic Approach, Vusumuzi Leroy Sibanda

Dissertations and Theses

This dissertation focuses on providing quantitative insights regarding kinetic, thermodynamic and mechanistic parameters of neuropeptide S-nitrosylation by nitrous acid (HNO₂), peroxynitrite (ONOO^-) and S-nitroso-N-acetyl-D,L-penicillamine (SNAP) to produce S-nitrosothiols (SNOs). Peptide thiol stability and the formation of SNOs from neuropeptides; arginine vasopressin (AVP), somatostatin-14 (SST-14) and urotensin II (U-II) was studied. Investigations into the effects of temperature, copper chelators and pH on peptide thiol autoxidation show that AVP, SST-14 and U-II thiols have half-lives of 30, 44 and 28.2 mins respectively at physiologically relevant temperature and pH in the absence of metal chelators. Target peptide thiols were …

E-Cigarette Fluids And Aerosol Residues Cause Oxidative Stress And An Inflammatory Response In Human Keratinocytes And 3d Skin Models., Careen Khachatoorian, Wentai Luo, Kevin J. Mcwhirter, James F. Pankow, Prue Talbot

Chemistry Faculty Publications and Presentations

Our goal was to evaluate the effects of EC refill fluids and EC exhaled aerosol residue (ECEAR) on cultured human keratinocytes and MatTek EpiDerm™, a 3D air liquid interface human skin model. Quantification of flavor chemicals and nicotine in Dewberry Cream and Churrios refill fluids was done using GC-MS. The dominant flavor chemicals were maltol, ethyl maltol, vanillin, ethyl vanillin, benzyl alcohol, and furaneol. Cytotoxicity was determined with the MTT and LDH assays, and inflammatory markers were quantified with ELISAs. Churrios was cytotoxic to keratinocytes in the MTT assay, and both fluids induced ROS production in the medium (ROS-Glo™) and …

The Effect Of A Ferrite-Core Relay Vs. An Air-Core Relay On The Output Power Characteristics Of A Three-Coil Wireless Power Transfer System, Jakob L. White

University Honors Theses

The purpose of this thesis is to determine the effect of using a ferrite-core relay on the output power characteristics of a three-coil, parallel-tuned, domino-resonator wireless power transfer (WPT) system in comparison to the effect of using an air-core relay in such a system. First, a general mathematical model is presented to describe both the ferrite-core-relay system and the air-core-relay system and to calculate their output power characteristics for seven different resistive loads at each of five different distance configurations between the coils. Next, experimental results are analyzed and compared to the mathematical results to confirm model accuracy. Finally, the …

Automated Statistical Structural Testing Techniques And Applications, Yang Shi

Dissertations and Theses

Statistical structural testing(SST) is an effective testing technique that produces random test inputs from probability distributions. SST shows superiority in fault-revealing power over random testing and deterministic approaches since it heritages the merits from both of them. SST ensures testing thoroughness by setting up a probability lower-bound criterion for each structural cover element and test inputs that exercise a structural cover element sampled from the probability distribution, ensuring testing randomness. Despite the advantages, SST is not a widely used approach in practice. There are two major limitations. First, to construct probability distributions, a tester must understand the underlying software's structure, …

A Paleoseismic Study Of The Twin Lakes Fault, Mount Hood Fault Zone, Oregon, Charlie Carr, Ashley R. Streig

McNair Symposium

Recent geologic mapping on high-resolution topography from lidar has led to the discovery of a zone of active faults on Mount Hood. The Mt. Hood Fault Zone consists of four separate faults, and stretches ~55 km from south to north, and crosses the summit of Mount Hood. The focus of this study is the northern section of Twin Lakes Fault, which lies directly south of Mount Hood and adjacent to OR35 and the White River. Lidar topography reveals the west side down normal displacement on the Twin Lakes fault. The highest tectonic seismicity rates in the Mount Hood area occur …

Motivational Factors And Opportunities To Science, Technology, Engineering, And Mathematics (Stem) Majors Among Native Hawaiian And Other Pacific Islanders (Nhpi), Shanthia Espinosa, Alma M. O. Trinidad

McNair Symposium

Higher education is a contentious space that poses challenges and barriers to the science, technology, engineering, and math (STEM) fields. This study explores the motivational factors and opportunities to STEM fields among Native Hawaiian Pacific Islanders (NHPI). A qualitative method was used in this study, examining public archival data (e.g., videos, recordings, digital information, etc.) of self-identified NHPI scientists, scholar-activists, leaders, and their narratives of entering the STEM fields. Specifically, the portrayal of needs and promotion of NHPI representation and access were examined, including messages that inspire and encourage STEM interest among NHPI youth. This study explores motivation, opportunities, and …

Ronald E. Mcnair Scholars Program Profiles And Abstracts 2021, Mcnair Scholars Program

McNair Symposium

This is the complete event program and provides presentation abstracts and biographies of McNair scholars and their mentors.

Quantum Grover's Oracles With Symmetry Boolean Functions, Peng Gao

Dissertations and Theses

Quantum computing has become an important research field of computer science and engineering. Among many quantum algorithms, Grover's algorithm is one of the most famous ones. Designing an effective quantum oracle poses a challenging conundrum in circuit and system-level design for practical application realization of Grover's algorithm.

In this dissertation, we present a new method to build quantum oracles for Grover's algorithm to solve graph theory problems. We explore generalized Boolean symmetric functions with lattice diagrams to develop a low quantum cost and area efficient quantum oracle. We study two graph theory problems: cycle detection of undirected graphs and generalized …

Trem2 Is Thyroid Hormone Regulated Making The Trem2 Pathway Druggable With Ligands For Thyroid Hormone Receptor., Skylar J. Ferrara, Priya Chaudhary, Margaret J. Debell, Gail Marracci, Hannah Miller, Evan Calkins, Edvinas Pocius, Brooke A. Napier, Ben Emery, Dennis Bourdette, Thomas S. Scanlan

Biology Faculty Publications and Presentations

Triggering receptor expressed on myeloid cells-2 (TREM2) is a cell surface receptor on macrophages and microglia that senses and responds to disease-associated signals to regulate the phenotype of these innate immune cells. The TREM2 signaling pathway has been implicated in a variety of diseases ranging from neurodegeneration in the central nervous system to metabolic disease in the periphery. Here, we report that TREM2 is a thyroid hormone-regulated gene and its expression in macrophages and microglia is stimulated by thyroid hormone and synthetic thyroid hormone agonists (thyromimetics). Our findings report the endocrine regulation of TREM2 by thyroid hormone, and provide a …

A Multiplicity Of Journeys: Stem Education Ecosystems As Sources Of Cultural Sustenance, Christopher Louis Beauprey Cardiel

Dissertations and Theses

In this document, I outline the context and significance of a research problem faced by both formal and informal science, technology, engineering, and math (STEM) educators in the Portland metro area--specifically, the need for greater understanding of the individual and cultural motivations, needs, and agentic behavior of learners, as well as the ways in which these factors intersect with learners' experiences of cultural sustenance within their holistic STEM education ecosystems. I base the significance of this problem on the racial and gender inequities evident in the STEM fields and the social and cultural dynamics that discourage members of these groups …

Proximal Policy Optimization For Radiation Source Search, Philippe Erol Proctor

Dissertations and Theses

Rapid localization and search for lost nuclear sources in a given area of interest is an important task for the safety of society and the reduction of human harm. Detection, localization and identification are based upon the measured gamma radiation spectrum from a radiation detector. The nonlinear relationship of electromagnetic wave propagation paired with the probabilistic nature of gamma ray emission and background radiation from the environment leads to ambiguity in the estimation of a source's location. In the case of a single mobile detector, there are numerous challenges to overcome such as weak source activity, multiple sources, or the …

Experiences Of Undergraduates And Graduate Teaching Assistants In Biology Course-Based Undergraduate Research Experiences, Emma Crystal Goodwin

Dissertations and Theses

Evidence of positive student outcomes from course-based undergraduate research experiences (CUREs) has sparked implementation of CUREs in introductory biology laboratory courses, as one approach to boosting student engagement in research. In a CURE, students collaborate with other students and instructors on a research project, where they conduct novel scientific research that has relevance to a local or scientific community. However, previous research rarely considers that graduate teaching assistants (GTAs) often teach introductory labs. The classroom role of GTAs expands in a CURE--they no longer need to simply teach a lab class, but also to serve as research mentors. GTAs, who …

Information Security Maturity Model For Healthcare Organizations In The United States, Bridget Joan Barnes Page

Dissertations and Theses

This research provides a maturity model for information security for healthcare organizations in the United States. Healthcare organizations are faced with increasing threats to the security of their information systems. The maturity model identifies specific performance metrics, with relative importance measures, that can be used to enhance information security at healthcare organizations allowing them to focus scarce resources on mitigating the most important information security threat vectors. This generalizable, hierarchical decision model uses both qualitative and quantitative metrics based on objective goals. This model may be used as a baseline by which to measure individual organizational performance, to measure performance …

Lidar Predictive Modeling Of Pacific Northwest Mound Sites: A Study Of Willamette Valley Kalapuya Mounds, Oregon (Usa), Tia Rachelle Cody, Shelby Anderson

Anthropology Faculty Publications and Presentations

Archaeologists need new methods to survey large areas and overcome environmental and archaeological barriers to site discovery in heavily forested regions. LiDAR (light detection and ranging) technology is one possible solution to these challenges as LiDAR digitally clears away vegetation, facilitating large-scale remote sensing survey. The Calapooia Watershed, located in the southern Willamette Valley of Oregon, is an ideal area to utilize LiDAR. While valley lowlands are cleared for agriculture, riverine areas remain heavily wooded and are known to contain hundreds of low-lying earthwork features created by pre-colonial Kalapuyan people. To assess the potential application of LiDAR in this region, …

Participatory Gis Mapping Highlights Indirect Use And Existence Values Of Coastal Resources And Marine Conservation Areas, Kaegan M. Scully‐Engelmeyer, Elise F. Granek, Max Nielsen-Pincus, Greg Brown

Environmental Science and Management Faculty Publications and Presentations

Consideration of social and cultural dimensions in coastal and marine planning has increased and ecosystem services provide important framing to investigate values and priorities associated with these systems. Research efforts in coastal communities offer insights on social dimensions of ocean and coastal management decisions, but questions remain about how demographics and geographic residence affect perceptions of marine resources and management. We conducted and analyzed a public participation geographic information system (PPGIS) mapping survey of Oregon residents to capture uses and perceived values of coastal and marine areas. We measured coastal values, explored regional differences in those values, and identified a …

Relative Impacts Of Climate Change And Land Cover Change On Streamflow Using Swat In The Clackamas River Watershed, Usa, Junjie Chen, Heejun Chang

Geography Faculty Publications and Presentations

To understand the spatial–temporal pattern of climate and land cover (CLC) change effects on hydrology, we used three land cover change (LCC) coupled scenarios to estimate the changes in streamflow metrics in the Clackamas River Watershed in Oregon for the 2050s (2040–2069) and the 2080s (2070–2099). Coupled scenarios, which were split into individual and combined simulations such as climate change (CC), LCC, CLC change, and daily streamflow were simulated in the Soil and Water Assessment Tool. The interannual variability of streamflow was higher in the lower urbanized area than the upper forested region. The watershed runoff was projected to be …

Marine Debris And Human Health: An Exposure Pathway Of Pops?, Katie Conlon

Urban Studies and Planning Faculty Publications and Presentations

Although there are not any direct studies linking persistent organic pollutants (POPs) accumulated on marine debris to human health, there are numerous studies showing human health impacts from repeated and high level POP exposure, as well as studies that show POPs accumulate on plastic debris in the marine environment. With this knowledge, there is a need for greater awareness of the risks of POP exposure for those who handle marine debris regularly, especially in contexts of higher exposure such as those working in marine debris concentrated areas. Amongst the scientific community, understanding of the exposure risk might be high, but …

Microscopic Object Classification Through Passive Motion Observations With Holographic Microscopy, Christian Lindensmith, Jay Nadeau, Manuel Bedrossian, Louis Sumrall, J. Kent Wallace, Eugene Serabyn

Physics Faculty Publications and Presentations

Digital holographic microscopy provides the ability to observe throughout a volume that is large compared to its resolution element without the need to refocus through the volume. This capability enables simultaneous observations of large numbers of small objects within such a volume. We have constructed a microscope that can observe a volume 0.4 x 0.4 x 1.0 μm with submicrometer resolution for observation of microorganisms and minerals in liquid environments in earth and on potential planetary missions. Because environmental samples are likely to contain mixtures of inorganics and microorganisms that are of comparable sizes near the resolution limit of the …

Teacher Preparation In The Shadow Of Loss: The Blurring Of Transacting, Transforming, And Transgressing, Anita L. Bright

Curriculum and Instruction Faculty Publications and Presentations

In this narrative, autoethnographic piece, the author contends with the constructs of transactional, transformational, and transgressive forms of educational engagement and teaching, all coming to the fore in a time of tremendous sorrow, loss, stress, and transition. Looking to critical scholars and their works for guidance, the author describes the path into and through a course with teacher candidates, taken on mid-term after the unexpected death of a close colleague.

Linear Nearest Neighbor Flocks With All Distinct Agents, R. G. Lyons, J. J. P. Veerman

Mathematics and Statistics Faculty Publications and Presentations

This paper analyzes the global dynamics of one-dimensional agent arrays with nearest neighbor linear couplings. The equations of motion are second-order linear ODE’s with constant coefficients. The novel part of this research is that the couplings are different for each distinct agent. We allow the forces to depend on the positions and velocity (damping terms) but the magnitudes of both the position and velocity couplings are different for each agent. We, also, do not assume that the forces are “Newtonian” (i.e. the force due to A on B equals the minus the force of B on A) as this assumption …

Insight Into The Early Exhumation Of The Cycladic Blueschist Unit, Syros, Greece: Combined Application Of Zoned Garnet Geochronology, Thermodynamic Modeling, And Quartz Elastic Barometry, Jennifer S. Gorce, Mark J. Caddick, Ethan F. Baxter, Besim Dragovic, John C. Schumacher, Robert J. Bodnar, Jamie F. Kendall

Geology Faculty Publications and Presentations

Constraining conditions and mechanisms of the early stages of exhumation from within subduction zones is challenging. Although pressure, temperature, and age can be inferred from the exhumed rock record, it is generally difficult to derive each of these parameters from any single rock, thus demanding assumptions that diverse data from multiple samples can be safely combined into a single pressure-temperature-time (P-T-t) path that might then be used to infer tectonic context and mechanisms of exhumation. Here, we present new thermobarometric and geochronologic information preserved in a single sample from Syros, Greece, to deduce the …

Graphical Models In Reconstructability Analysis And Bayesian Networks, Marcus Harris, Martin Zwick

Complex Systems Faculty Publications and Presentations

Reconstructability Analysis (RA) and Bayesian Networks (BN) are both probabilistic graphical modeling methodologies used in machine learning and artificial intelligence. There are RA models that are statistically equivalent to BN models and there are also models unique to RA and models unique to BN. The primary goal of this paper is to unify these two methodologies via a lattice of structures that offers an expanded set of models to represent complex systems more accurately or more simply. The conceptualization of this lattice also offers a framework for additional innovations beyond what is presented here. Specifically, this paper integrates RA and …

Exploring Linkages Between Landscape Patterns And Freshwater And Estuarine Bivalves In The Coast Range Of Oregon, Kaegan Michael Scully-Engelmeyer

Dissertations and Theses

Spatial configurations of landscape variables (biotic, abiotic, and socio-ecological) affect and are affected by ecological processes and species in watersheds. This dissertation explores relationships among landscape patterns, ecosystem processes and bivalve species dynamics in coastal watersheds in Oregon, USA. I approached this broad topic through two primary avenues of research: investigating cross-ecosystem threats from pesticide use in forestland management to downstream aquatic environments, and the landscape ecology of an at-risk freshwater mussel species.

Terrestrial land use activities present cross-ecosystem threats to riverine and marine species and processes. Specifically, pesticide runoff can disrupt hormonal, reproductive, and developmental processes in aquatic organisms, …

Data From: Drivers Of Zooplankton Community Composition In A Novel Ecosystem: Hawai’I Mangroves As A Case Study, Casey L. Lewis, Elise F. Granek

Environmental Science and Management Datasets

Management of established non-native plants is challenging because removal is expensive and can produce negative consequences, yet establishment can create novel ecosystems. Red mangrove propagules were introduced to Moloka'i, Hawai’i in 1902 to mitigate the effects of soil erosion and have since spread along the coast and to adjacent islands creating novel habitat. We compared zooplankton communities between novel mangrove and historical non-mangrove habitat both within fishponds and along open coastline to examine environmental factors, including mangrove presence, affecting zooplankton community composition.

Community composition patterns were driven by lunar cycle and site characteristics, including fishpond structure, mangrove and open coast …