Digital Commons Network^™

Forcing And Dynamics Of Seafloor-Water Column Exchange On A Broad Continental Shelf, William B. Savidge, Ann Gargett, Richard A. Jahnke, James R. Nelson, Dana K. Savidge, R. Timothy Short, George Voulgaris

OES Faculty Publications

Relict sediments of elevated permeability characterize the majority of continental shelves globally (Emery, 1968). In these settings, interactions between benthic boundary layer (BBL) flows and seabed topography generate pressure fluctuations that drive advective and dispersive porewater transport, dramatically increasing the magnitude and variability of porewater solute and particulate exchange across the sediment-water interface (Huettel et al., 1996; Huettel and Rusch, 2000). On broad shallow shelves with a relatively large area-to-volume ratio, the seafloor’s role is magnified. Energetic events may reorganize bedforms across a significant fraction of the shelf, leading to altered exchange dynamics that may persist long after the organizing …

Impacts Of Chromophoric Dissolved Organic Material On Surface Ocean Heating In The Chukchi Sea, Victoria J. Hill

OES Faculty Publications

Recent observations show visible light attenuation in the Arctic Ocean to be greater than previously assumed. High attenuation observed during the period prior to ice melt and increased phytoplankton production, was attributed primarily to the high levels of absorption by chromophoric dissolved organic material ( CDOM) present in these waters. Preliminary evidence suggests this material is produced by ice algae in the early spring. Optical data from the Chukchi shelf system collected in the spring and summer of 2002, were used to model energy absorption in the mixed layer by both dissolved and particulate material. In the spring, absorption by …

Food Limitation In Larval Fish: Ontogenetic Variation In Feeding Scope And Its Potential Effect On Survival, Alexander B. Bochdansky, Peter Grønkjær, Pierre Pepin, William C. Leggett

OES Faculty Publications

We used the radiated shanny Ulvaria subbifurcataas a model species to explore the relative gut fullness from hatch to metamorphosis of wild larvae, and compared these values with those of laboratory-reared larvae fed at maximum rates. Ingestion rates of most wild larvae were above starvation levels but below the maximum feeding levels of laboratory-reared larvae. Twenty-six percent of freshly-hatched wild larvae and 11% of large, pre-settlement wild larvae had insufficient food in their stomach to satisfy metabolic requirements. These results, taken on their own, are consistent with the much hypothesized increased foraging performance and survival of larger larvae relative …

Turbulent Lifestyle: Microbial Mats On Earth’S Sandy Beaches—Today And 3 Billion Years Ago, Nora Noffke

OES Faculty Publications

Archean Earth history is very difficult to reconstruct. Until recently, only bacterial cells preserved in chert, microborings, and stromatolites provided the few clues to ancient life. Now, siliciclastic “microbially induced sedimentary structures” (MISS) are adding to our knowledge of both past life and paleoenvironments. MISS rise from the interaction of photoautotrophic microbial mats with physical sediment dynamics in siliciclastic, shallow-marine settings. Archean MISS can be understood through observations of living microbial mats and modern biotic-physical sedimentary processes. Such geobiological studies are key to the interpretation of the early evolution of prokaryotes. For example, the 2.9 Ga Pongola Supergroup, South Africa, …

Ship Ballast Tanks: How Microbes Travel The World, Fred C. Dobbs

OES Faculty Publications

As the international shipping fleet travels the oceans, it carries with it hidden cargoes of microbes. Fred C. Dobbs explores the hazards posed and what can be done to counteract them.

Naturally Present Fatty Acids As Internal Calibrants For Fourier Transform Mass Spectra Of Dissolved Organic Matter, Rachel L. Sleighter, Georgina A. Mckee, Zhanfei Liu, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

The analysis of dissolved organic matter ( DOM) by Fourier transform ion cyclotron resonance mass spectrometry ( FTICR- MS) has gained wide interest recently, driven primarily by its ultrahigh resolving power and mass accuracy. Accurate calibration of mass spectra is a key step to successfully decipher the DOM components. We propose a simple and accurate method to internally calibrate the peaks in the complex spectra without the need to add a calibrant. Mass spectra of DOM samples from the Dismal Swamp, Virginia, and the lower Chesapeake Bay display the presence of naturally occurring fatty acids which can be readily recognized …

Determination Of Photochemically Produced Carbon Dioxide In Seawater, Emily M. White, David J. Kieber, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

An analytical system was developed to determine photochemically produced carbon dioxide in marine waters. Our system was designed to measure low levels of carbon dioxide by maintaining a closed system to prevent atmospheric contamination during sample preparation, irradiation, and analysis. To detect low levels of photoproduced carbon dioxide in seawater, background dissolved inorganic carbon (DIC) was removed before irradiation. To strip out DIC, samples were acidified to pH 3.0 (converting DIC to carbon dioxide) and bubbled with low carbon dioxide air. The pH was then readjusted back to the original value, and the resulting low-DIC seawater samples were transferred pneumatically …

The Impact Of The “Universal Voyager Literacy” Reading Program On Reading Achievement And Instructional Practices In An Urban School District, Shanika L. Hope

Theses and Dissertations in Urban Studies

Founded in 1994, Voyager Expanded Learning is a provider of K-3 in-school reading programs, as well as K-8 reading intervention programs for school districts throughout the United States. Voyager Universal Literacy's systematic, precise framework fully addresses the five elements of reading instruction, through an explicit succession of ability growth. Voyager Universal Literacy was developed to be a comprehensive program encompassing the subsequent requisites: in-school broad reading program, progress monitoring methods, extensive-day and summer activities, home learning syllabus, implementation monitoring, and on-going professional development. Voyager Universal Literacy Program activities are organized to provide a thorough range and progression for reading instruction. …

Design Of A High-Speed Architecture For Stabilization Of Video Captured Under Non-Uniform Lighting Conditions, Ming Zhu Zhang

Electrical & Computer Engineering Theses & Dissertations

Video captured in shaky conditions may lead to vibrations. A robust algorithm to immobilize the video by compensating for the vibrations from physical settings of the camera is presented in this dissertation. A very high performance hardware architecture on Field Programmable Gate Array (FPGA) technology is also developed for the implementation of the stabilization system. Stabilization of video sequences captured under non-uniform lighting conditions begins with a nonlinear enhancement process. This improves the visibility of the scene captured from physical sensing devices which have limited dynamic range. This physical limitation causes the saturated region of the image to shadow out …

Nutrient And Carbon Dynamics In The Chesapeake Bay Outflow Plume And Their Effect On The Coastal Ocean Environment, Katherine C. Filippino

OES Theses and Dissertations

Seasonally resolved nutrient and carbon fluxes from estuaries to the coastal ocean are poorly constrained. Nutrient and carbon cycling in highly productive regions like the Chesapeake Bay outflow plume and surrounding coastal environments greatly affect our global understanding of carbon cycling. The overall questions for the research described in this dissertation stem from the need to close global carbon budgets, and obtain a fundamental understanding of nutrient dynamics in a coastal region heavily influenced by seasonality and human impacts.

Within the framework of physical characteristics of the outflow plume and through the characterization of nutrient concentrations, primary productivity rates, and …

Maldi Mass Spectrometry Imaging For The Discovery Of Prostate Carcinoma Biomarkers, Lisa Harris Cazares

Theses and Dissertations in Biomedical Sciences

The elucidation of new biological markers of prostate cancer (PCa) should aid in the detection, and prognosis of this disease. Diagnostic decision making by pathologists in prostate cancer is highly dependent on tissue morphology. The ability to localize disease-specific molecular changes in tissue would help improve this critical pathology decision making process. Direct profiling of proteins in tissue sections using MALDI imaging mass spectrometry (MALDI-IMS) has the power to link molecular detail to morphological and pathological changes, enhancing the ability to identify candidates for new specific biomarkers. However, critical questions remain regarding the integration of this technique with clinical decision …

Gene Therapy Using Tet-Repressor System To Modulate Prostate Tumor Microenvironment, Nazita Yousefieh

Theses and Dissertations in Biomedical Sciences

Prostate cancer is the most commonly diagnosed malignancy in men in the United States and is projected to be the third most frequent cause of male cancer-related deaths in 2007 after lung and skin cancers. The initial treatment for prostate cancer at early stages is prostatectomy or radiation, which usually is curative. However, approximately 20% of patients are not cured by such treatments and their cancer recurs, sometimes with long latencies. In other patients prostate cancer is diagnosed only after the cancer has metastasized and there are no effective therapies at this stage. Therefore immunotherapy seems to be a promising …

Biological Networks: Modeling And Structural Analysis, Emad Y. Ramadan

Computer Science Theses & Dissertations

Biological networks are receiving increased attention due to their importance in understanding life at the cellular level. There exist many different kinds of biological networks, and different models have been proposed for them. In this dissertation we focus on suitable network models for representing experimental data on protein interaction networks and protein complex networks (protein complexes are groups of proteins that associate to accomplish some function in the cell), and to design algorithms for exploring such networks. Our goal is to enable biologists to identify the general principles that govern the organization of protein-protein interaction networks and protein complex networks. …

Catalytic Wet Air Oxidation Of Mono Azo Dye Orange Ii: Catalyst Selection, Reaction Kinetics, And Modeling, Pinar Ozdural

Civil & Environmental Engineering Theses & Dissertations

Wastewaters generated as byproducts of dyeing processes are not treatable with conventional methods. It has been estimated that among the 900,000 tons of different dyes produced annually in the world, approximately 10–15% are lost in wastewater streams during manufacturing and processing operations. Once in rivers and streams, dyes cause major problems, such as reducing light penetration, or displaying toxic effects on aquatic life. Therefore, it is essential that dyes are removed from wastewaters before being discharged into the environment.

This study focuses on the catalytic wet air oxidation (CWAO) of Orange II, a mono azo dye used in large amounts …

The Perspective And Practice Of Leadership By Managers Within The Virginia Department Of Corrections: An Instrumental Case Study, Elizabeth M. Gagnon

School of Public Service Theses & Dissertations

This dissertation explores the extent to which the perspective and practice of leadership by managers in the Virginia Department of Corrections (DOC) reflect the Leadership Perspectives Model (LPM), and the extent to which their perspective varies by level of management. The LPM is a model of leadership that consolidates leadership study into five distinct leadership perspectives that managers use in their understanding and practice of leadership. This study builds upon research in which the a LPM was tested and validated within a sample managers from municipal government agencies (M. R. Fairholm, 2004a, 2004b).

The findings of this study reveal that …

Improved Constrained Global Optimization For Estimating Molecular Structure From Atomic Distances, Terri Marie Grant

Mathematics & Statistics Theses & Dissertations

Determination of molecular structure is commonly posed as a nonlinear optimization problem. The objective functions rely on a vast amount of structural data. As a result, the objective functions are most often nonconvex, nonsmooth, and possess many local minima. Furthermore, introduction of additional structural data into the objective function creates barriers in finding the global minimum, causes additional computational issues associated with evaluating the function, and makes physical constraint enforcement intractable. To combat the computational problems associated with standard nonlinear optimization formulations, Williams et al. (2001) proposed an atom-based optimization, referred to as GNOMAD, which complements a simple interatomic distance …

Subcellular Localization Of Human T-Cell Leukemia Virus Type 1 Tax Oncoprotein, Kimberly Anne Fryrear

Theses and Dissertations in Biomedical Sciences

Human T-cell Leukemia Virus Type 1 (HTLV-1) is a transforming retrovirus that gives rise to Adult T-cell Leukemia (ATL) and a variety of other subneoplastic conditions such as HTLV-Associated Myelopathy/Tropical Spastic Paraperesis (HAM/TSP). In ATL, the transformation and immortalization of T-lymphocytes has been attributed to the expression and activity of a single HTLV-1 viral protein, namely the trans-activating protein Tax. Although the exact mechanism of Tax-mediated transformation is uncertain, current studies support a model in which Tax induces genomic instability in the host cell through interference with DNA repair mechanisms, dysregulation of cell cycle progression, transcriptional activation of cellular …

Microspore Wall Morphogenesis And Orbicule Ultrastructure Of Isoetes, Khalid Alarid

Biological Sciences Theses & Dissertations

The microspore wall morphogenesis and orbicule ultrastructure of Isoetes were studied using electron microscopy. Microspore wall morphogenesis in five species of Isoetes (I. appalachiana, I. engelmannii, I. hyemalis, I. piedmontana, and an undescribed species from York Co., VA, USA) was studied using scanning and transmission electron microscopy. Results show that they generally have the same developmental stages in terms of microspore wall morphogenesis. The mature microspore wall consisted of four layers: perispore, paraexospore, exospore and endospore. Paraexospore formation began during the tetrad stage. The exospore was then formed between the paraexospore and the plasma membrane. During the free spore …

Orientalizing Post/Communism: Europe's 'Wild East' In Literature And Film, Nataša Kovačević

Reconstruction: Studies in Contemporary Culture

The essay posits post/communist Eastern Europe as a neocolonial terrain to show how contemporary discursive underpinnings of global capitalism and liberal democracy have been shaped by a combined Orientalist demonization of communist regimes and Eastern European cultures. It analyzes how old Orientalisms surface in the Cold War period, re-articulated in narratives that define a European or civilizational ideal as an essentially liberal-democratic project against the discursive palimpsest of totalitarian, barbarian, and Oriental communists. The establishment of this discourse has helped to justify transitions to market economy and liberal-civic society in post-communism. These developments increasingly provincialize Eastern Europe through suppressing its …

A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer

CCPO Publications

We used a stochastic Lagrangian model to study how behaviour contributes to copepod grazing success. The model simulates distinct foraging behaviours of Clausocalanus furcatus, Paracalanus aculeatus, and Oithona plumifera. Three sets of simulations were performed to investigate the effects of (a) prey-size preference; (b) variation in prey-size spectra; and (c) turbulence intensity on these species’ grazing rates. The size preference simulations demonstrate that, compared with copepodites, mature females have cell ingestion rates that are an order of magnitude lower, while carbon uptake is reduced by 35%. A prey spectrum that is skewed towards cells ,<6 >μm promotes copepodite …

A New Method Of Synthesizing Black Birnessite Nanoparticles: From Brown To Black Birnessite With Nanostructures, Marcos A. Cheney, Pradip K. Bhowmik, Shizhi Qian, Sang W. Joo, Wensheng Hou, Joseph M. Okoh

Mechanical & Aerospace Engineering Faculty Publications

A new method for preparing black birnessite nanoparticles is introduced. The initial synthesis process resembles the classical McKenzie method of preparing brown birnessite except for slower cooling and closing the system from the ambient air. Subsequent process, including wet-aging at 7° C for 48 hours, overnight freezing, and lyophilization, is shown to convert the brown birnessite into black birnessite with complex nanomorphology with folded sheets and spirals. Characterization of the product is performed by X-ray diffraction (XRD), transmission electron microscopy (TEM), high-resolution transmission electron microscopy (HRTEM), thermogravimetric analysis (TGA), and N(2) adsorption ( BET) techniques. Wet-aging and lyophilization times are …

What Is The Opposite Of Bullshit? Possibilities Of Intellectual Engagement, Since Sartre: An Interview With Bill Martin - Part 2, Joseph G. Ramsey

Reconstruction: Studies in Contemporary Culture

Part 2 of interview with Bill Martin.

Before Moynihan: Stanley Elkins's Slavery(1959), Psychoanalytic Discourse And The Cold War, Mark J. Goodman

Reconstruction: Studies in Contemporary Culture

[First paragraph]

Drawing on the neglected connection between racial politics and the Cold War, Mary Dudziak (379, quoted in Mullen, 378-380) emphasizes that the Justice Department in this period urged an end to segregation "because of its use in Soviet propaganda". But if the Brown decision (1954) served that need, broadcasting abroad America's democratic intentions - and perhaps stimulating, inadvertently, the Southern movement - it proved otherwise ineffectual. Despite the long and thorough legal preparation by NAACP and other groups, through the mid-1960s, Southern schools remained racially divided; and segregation in the North was not challenged until a decade later. …

Constructing Country: Fakery And 'Strictly American' Music [Part 2], Kevin Yuill

Reconstruction: Studies in Contemporary Culture

[First paragraph]

Having identified the strands that would later make up country music, we now consider the further development of the search for a national music. It coincided with the growing romantic attachment of certain members of the elite to a racialized Anglo-Saxon American "folk" whose culture they re-imagined, shorn of any uncouth or labor-related themes, in contrast to more urban, black or immigrant cultures. The English proselytiser for Morris dancing, Cecil Sharp, exceeded the efforts of others in highlighting the music of the Appalachians as particularly Anglo-Saxon and thus worthy of attention. After World War I in particular, an …

Biology Of The Southern Ocean, Eileen E. Hofmann

CCPO Publications

The article reviews the book "Biology of the Southern Ocean," by George Knox.

Eastern Us Continental Shelf Carbon Budget Integrating Models, Data Assimilation, And Analysis, E. E. Hofmann, J. N. Druon, K. Fennel, M. Friedrichs

CCPO Publications

No abstract provided.

Estimation Of Shelf-Slope Exchanges Induced By Frontal Instability Near Submarine Canyons, A. Jordi, John M. Klinck, G. Basterretxea, A. Orfila

CCPO Publications

The dynamics associated with the propagation of unstable waves along a density front and their interaction with submarine canyons are simulated and analyzed with a fine-resolution three-dimensional primitive equation coastal ocean model. Simulations consider flow in an alongshore density front over two bottom topographies: an idealized straight shelf and a shelf incised by a canyon. The stationary circulation over the idealized shelf exhibits a geostrophic balance that is perturbed when the canyon topography is introduced. Enhanced cross-shore and vertical motions are produced as a result of the front-canyon interaction. A second set of simulations consider the effect of a small …

Effects Of The Fishery On The Northern Quahog (=Hard Clam, Mercenaria Mercenaria L.) Population In Great South Bay, New York: A Modeling Study, John N. Kraeuter, John M. Klinck, Eric N. Powell, Eileen E. Hofmann

CCPO Publications

A numerical bioenergetics simulation model based on the physiological processes affecting individual clams across a range of phenotypes describing a cohort has been developed and applied to the conditions in Great South Bay, New York. The clam population is relatively sensitive to food and to a lesser extent to temperature within this system. The timing of temperature and food in tire spring, and more importantly in the fall, call increase population sensitivity beyond the effects of one factor operating alone. The effects of fishing on the stocks in proportion to the size structure present. and as directed fisheries oil various …

Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams

CCPO Publications

Large-scale transport of seawater in ocean currents may generate spatially complex population structure through the advection of life stages of marine fish species. To test this, we compared the chemistry of otolith nuclei from Patagonian toothfish (Dissostichus eleginoides), presently managed as spatially discrete Populations corresponding to fishing management areas along the Antarctic Circumpolar Current (ACC), which transports water eastward around the Southern Ocean. The chemistry of otolith nuclei, laid down during early life, differed significantly between fishing areas Off South America and the Antarctic and between some Antarctic areas. However, we found significant discrepancies from expectation for a …

Mesoamerican Reef Spawning Aggregations Help Maintain Fish Population: A Review Of Connectivity Research And Priorities For Science Management, W. Heyman, W. B. Kjerfve, T. Ezer

CCPO Publications

The life history of most marine organisms includes an obligate period of pelagic larval dispersal. Migration to spawning areas and pelagic dispersal is often well beyond the home range of these organisms. Designing marine protected areas to include a broad range of taxa and their various dispersal patterns is an important and daunting challenge. This paper addresses the issue of connectivity for one set of species in a limited geographic area. We focus on transient spawning reef fish within the Mesoamerican Reef and their connectivity. We divide our scientific review into four sections as follows: (1) ecological characterization of transient …