Digital Commons Network^™

Current Status And Long-Term Trends In Water Quality And Living Resources In The Virginia Tributaries And Chesapeake Bay Mainstem From 1985 Through 2006, Daniel M. Dauer, Harold G. Marshall, John R. Donat, Michael F. Lane, Suzanne C. Doughten, Frederick A. Hoffman

Status and Trends for Virginia Chesapeake Bay

The period prior to the implementation of the Chesapeake Bay Monitoring Program was characterized by a marked decline in the water quality of the Chesapeake Bay. The disappearance of submerged aquatic vegetation in certain regions of the Bay, declines in the abundance of some commercially and recreationally important species, increases in the incidence of low dissolved oxygen events, changes in the Bay's food web, and other ecological problems have been related to the deteriorating water quality (e.g. USEPA, 1982,1983;Officer et al.,1984; Orth and Moore, 1984). The results of concentrated research efforts in the late 1970s and early 1980s stimulated the …

Evidence Of Self-Correcting Spiral Flows In Swimming Boxfishes, I. K. Bartol, M. S. Gordon, P. Webb, D. Weihs, M. Gharib

Biological Sciences Faculty Publications

The marine boxfishes have rigid keeled exteriors (carapaces) unlike most fishes, yet exhibit high stability, high maneuverability and relatively low drag given their large cross-sectional area. These characteristics lend themselves well to bioinspired design. Based on previous stereolithographic boxfish model experiments, it was determined that vortical flows develop around the carapace keels, producing self-correcting forces that facilitate swimming in smooth trajectories. To determine if similar self-correcting flows occur in live, actively swimming boxfishes, two species of boxfishes (Ostracion meleagris and Lactophrys triqueter) were induced to swim against currents in a water tunnel, while flows around the fishes were quantified …

Physical And In Silico Approaches Identify Dna-Pk In A Tax Dna-Damage Response Interactome, Emad Ramadan, Michael Ward, Xin Guo, Sarah S. Durkin, Adam Sawyer, Marcelo Vilela, Christopher Osgood, Alex Pothen, Oliver J. Semmes

Biological Sciences Faculty Publications

Background: We have initiated an effort to exhaustively map interactions between HTLV-1 Tax and host cellular proteins. The resulting Tax interactome will have significant utility toward defining new and understanding known activities of this important viral protein. In addition, the completion of a full Tax interactome will also help shed light upon the functional consequences of these myriad Tax activities. The physical mapping process involved the affinity isolation of Tax complexes followed by sequence identification using tandem mass spectrometry. To date we have mapped 250 cellular components within this interactome. Here we present our approach to prioritizing these interactions via …

Low-Density Rodent Communities In Eastern Virginia, Robert K. Rose, Jean F. Stankavich

Virginia Journal of Science

Two communities of small mammals were live trapped every other week for 15 months in linear oilfield habitat bordered by forested swampland in eastern Virginia. All nine species of the rodent community were present, mostly in low numbers and often intermittently. All species were characterized by high transiency, with a minority of marked animals becoming resident. Despite high trappability, all but two species in these communities had extremely low densities, suggesting that most species could not sustain populations via in situ reproduction.

Absorption Spectral Slopes And Slope Ratios As Indicators Of Molecular Weight, Source, And Photobleaching Of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

A new approach for parameterizing dissolved organic matter ( DOM) ultraviolet-visible absorption spectra is presented. Two distinct spectral slope regions ( 275-295 nm and 350-400 nm) within log-transformed absorption spectra were used to compare DOM from contrasting water types, ranging from wetlands (Great Dismal Swamp and Suwannee River) to photobleached oceanic water ( Atlantic Ocean). On the basis of DOM size-fractionation studies ( ultrafiltration and gel filtration chromatography), the slope of the 275-295- nm region and the ratio of these slopes (S_R; 275-295- nm slope : 350-400- nm slope) were related to DOM molecular weight ( MW) and …

Advancing Epidemiological Science Through Computational Modeling: A Review With Novel Examples, Scott M. Duke-Sylvester, Eli N. Perencevich, Jon P. Furuno, Leslie A. Real, Holly Gaff

Biological Sciences Faculty Publications

Computational models have been successfully applied to a wide variety of research areas including infectious disease epidemiology. Especially for questions that are difficult to examine in other ways, computational models have been used to extend the range of epidemiological issues that can be addressed, advance theoretical understanding of disease processes and help identify specific intervention strategies. We explore each of these contributions to epidemiology research through discussion and examples. We also describe in detail models for raccoon rabies and methicillin-resis-tant Staphylococcus aureus, drawn from our own research, to further illustrate the role of computation in epidemiological modeling.

Ancient Dna Identification Of Early 20th Century Simian T-Cell Leukemia Virus Type 1, Sebastien Calvignac, Jean-Michel Terme, Shannon M. Hensley, Pierre Jalinot, Alex D. Greenwood, Catherine Hanni

Biological Sciences Faculty Publications

The molecular identification of proviruses from ancient tissues (and particularly from bones) remains a contentious issue. It can be expected that the copy number of proviruses will be low, which magnifies the risk of contamination with retroviruses from exogenous sources. To assess the feasibility of paleoretrovirological studies, we attempted to identify proviruses from early 20th century bones of museum specimens while following a strict ancient DNA methodology. Simian T-cell leukemia virus type 1 sequences were successfully obtained and authenticated from a Chlorocebus pygerythrus specimen. This represents the first clear evidence that it will be possible to use museum specimens to …

Genome-Wide Compensatory Changes Accompany Drug-Selected Mutations In The Plasmodium Falciparum Crt Gene, Hongying Jiang, Jigar J. Patel, Ming Yi, Jianbing Mu, Jinhui Ding, Robert Stephens, Roland A. Cooper, Michael T. Ferdig, Xin-Zhuan Su

Biological Sciences Faculty Publications

Mutations in PfCRT (Plasmodium falciparum chloroquine-resistant transporter), particularly the substitution at amino acid position 76, confer chloroquine (CQ) resistance in P. falciparum. Point mutations in the homolog of the mammalian multidrug resistance gene (pfmdr1) can also modulate the levels of CQ response. Moreover, parasites with the same pfcrt and pfmdr1 alleles exhibit a wide range of drug sensitivity, suggesting that additional genes contribute to levels of CQ resistance (CQR). Reemergence of CQ sensitive parasites after cessation of CQ use indicates that changes in PfCRT are deleterious to the parasite. Some CQR parasites, however, persist in the …

Using Rna Interference To Determine The Role Of Varisin In The Innate Immune System Of The Hard Tick Dermacentor Variabilis (Acari: Ixodidae)., Wayne L. Hynes, Martha M. Stokes, Shannon M. Hensley, S. Michelle Todd, Daniel E. Sonenshine

Biological Sciences Faculty Publications

Defensins are an important component of the innate immune system of ticks. These small peptides are produced by various genera of ticks, and expressed in various tissues. In this study we used RNA interference to silence the expression of the defensin varisin produced by the hemocytes of the American dog tick, Dermacentor variabilis. Ticks were injected with double stranded varisin RNA prior to being placed on a rabbit. After feeding, the ticks were removed, bled, and the hemolymph plasma and hemocytes separated. Hemocytes were screened for the presence (or absence) of both varisin transcript and peptide. Varisin peptide was …

Swimming Dynamics And Propulsive Efficiency Of Squids Throughout Ontogeny, Ian K. Bartol, Paul S. Krueger, Joseph T. Thompson, William J. Stewart

Biological Sciences Faculty Publications

Synopsis Squids encounter vastly different flow regimes throughout ontogeny as they undergo critical morphological changes to their two locomotive systems: the fins and jet. Squid hatchlings (paralarvae) operate at low and intermediate Reynolds numbers (Re) and typically have rounded bodies, small fins, and relatively large funnel apertures whereas juveniles and adults operate at higher Re and generally have more streamlined bodies, larger fins, and relatively small funnel apertures. These morphological changes and varying flow conditions affect swimming performance in squids. To determine how swimming dynamics and propulsive efficiency change throughout ontogeny, digital particle image velocimetry (DPIV) and kinematic …

Mycobacteriosis-Associated Mortality In Wild Striped Bass (Morone Saxatilis) From Chesapeake Bay, Usa, D. T. Gauthier, R. J. Latour, D. M. Heisey, C. F. Bonzek, J. Gartland, E. J. Burge, W. K. Vogelbein

Biological Sciences Faculty Publications

The striped bass (Morone saxatilis) is an economically and ecologically important finfish species along the Atlantic seaboard of the United States. Recent stock assessments in Chesapeake Bay (USA) indicate that non-fishing mortality in striped bass has increased since 1999, concomitant with very high (>50%) prevalence of visceral and dermal disease caused by Mycobacterium spp. Current fishery assessment models do not differentiate between disease and other components of non-fishing mortality (e. g., senescence, predation); therefore, disease impact on the striped bass population has not been established. Specific measurement of mortality associated with mycobacteriosis in wild striped bass is …

Hungry Realism: Style And Subjecthood In Meridel Le Sueur's The Girl, Amy Gentry

Reconstruction: Studies in Contemporary Culture

[First paragraph]

Meridel Le Sueur's 1939 novel The Girl occupies a troubled place within the history of American genres. Situated within several different subgenres—at once proletarian literature, feminist complaint, and sentimental melodrama—the novel sits comfortably in none. Written in 1939 but only published in 1978, it entered the public sphere almost forty years out of context, in a moment of radical feminism which, while it often resonated with Le Sueur's politics, could not but offer important dissonances as well. This long silence and late revision have partially obscured the book's original depiction of hunger as a force that destabilizes subjectivity …

Space And Capital In Richard Wright's Native Son And Twelve Million Black Voices, Bill V. Mullen

Reconstruction: Studies in Contemporary Culture

[First paragraph]

David Harvey has challenged Marxist criticism after Marx to think more about space. Harvey reminds us that "through the development of explicit bourgeois strategies of divide and control . . . all manner of class, gender, and other social divisions" are implanted into the "geographical landscape of capitalism" (40). "Divisions such as those between cities and suburbs, between regions as well as between nations cannot be understood as residuals from some ancient order," he writes. "They are actively produced through the differentiating powers of capital accumulation and market structures" (40). Harvey is one of a number of Marxist …

A Study Of The Distribution And Abundance Of The Adult Malaria Vector In Western Kenya Highlands, Li Li, Ling Bian, Guiyun Yan

Political Science & Geography Faculty Publications

Background: A sharp rise in the malaria mortality rate has been observed recently in western Kenya. Malaria is transmitted by mosquito vectors. Malaria control strategies can be more successful if the distribution and abundance of mosquito vectors is predicted. However, how mosquito vectors are distributed in space remain poor understood, and this question is rarely studied using spatial methods. This study aims to provide a better understanding of the distribution and abundance of mosquito vectors. To achieve this objective, spatial and non-spatial methods were employed. The data on the distribution of adult mosquitoes, and mosquito breeding habitats in a study …

Lignin Degradation In Wood-Feeding Insects, Scott M. Geib, Timothy R. Filley, Patrick G. Hatcher, Kelli Hoover, John E. Carlson, Maria Del Mar Jimenez-Gasco, Akiko Nakagawa-Izumi, Rachel L. Sleighter, Ming Tien

Chemistry & Biochemistry Faculty Publications

The aromatic polymer lignin protects plants from most forms of microbial attack. Despite the fact that a significant fraction of all lignocellulose degraded passes through arthropod guts, the fate of lignin in these systems is not known. Using tetramethylammonium hydroxide thermochemolysis, we show lignin degradation by two insect species, the Asian longhorned beetle (Anoplophora glabripennis) and the Pacific dampwood termite (Zootermopsis angusticollis). In both the beetle and termite, significant levels of propyl side-chain oxidation (depolymerization) and demethylation of ring methoxyl groups is detected; for the termite, ring hydroxylation is also observed. In addition, culture-independent fungal gut …

An Efficient Algorithm For Biomarker Identification, Jiang Li, Rick Mckenzie, Lisa Cazares, Richard Drake, John Semmens

Electrical & Computer Engineering Faculty Publications

No abstract provided.

Seasonal Adaptation Of Vegetation Color In Satellite Images, Srinivas Jakkula, Vamsi K.R. Mantena, Ramu Pedada, Yuzhong Shen, Jiang Li, Hamid R. Arabnia (Ed.)

Electrical & Computer Engineering Faculty Publications

Remote sensing techniques like NDVI (Normal Difference vegetative Index) when applied to phenological variations in aerial images, ascertained the seasonal rise and decline of photosynthetic activity in different seasons, resulting in different color tones of vegetation. The rise and fall of NDVI values decide the biological response, either the green up or brown down [1]. Vegetation in green up period appears with more vegetative vigor and during brown down period it has a dry appearance. This paper proposes a novel method that identifies vegetative patterns in satellite images and then alters vegetation color to simulate seasonal changes based on training …

Plasma Medicine, Mounir Laroussi, Alexander Fridman

Electrical & Computer Engineering Faculty Publications

Recent demonstrations of plasma technology in the treatment of living cells, tissues, and organs are creating a newfield at the intersection of plasma science and technology with biology and medicine - Plasma Medicine.

Systematic Revision Of Elaphoglossum (Dryopteridaceae) In French Polynesia, With The Description Of Three New Species, Germinal Rouhan, David H. Lorence, Timothy J. Motley, Judith Garrison Hanks, Robbin C. Moran

Biological Sciences Faculty Publications

Species descriptions and a key for the nine species of Elaphoglossum (Dryopteridaceae) in French Polynesia are provided. Three new species are described: E. austromarquesense from the southern Marquesas Islands, E. florencei from Raiatea and Moorea, and E. meyeri from Rapa. Each species is illustrated by a line drawing of the habit, and spore images using a scanning electron microscope. Images of scales, one of the most important diagnostic characters in the genus, are also included. © 2008 The Linnean Society of London.

Silencing Expression Of The Defensin, Varisin, In Male Dermacentor Variabilis By Rna Interference Results In Reduced Anaplasma Marginale Infections, Katherine M. Kocan, Jose De La Fuente, Raul Manzano-Roman, Victoria Naranjo, Wayne L. Hynes, Daniel E. Sonenshine

Biological Sciences Faculty Publications

Antimicrobial peptides, including defensins, are components of the innate immune system in ticks that have been shown to provide protection against both gram-negative and gram-positive bacteria. Varisin, one of the defensins identified in Dermacentor variabilis, was shown to be produced primarily in hemocytes but transcript levels were also expressed in midguts and other tick cells. In this research, we studied the role of varisin in the immunity of ticks to the gram-negative cattle pathogen, Anaplasma marginale. Expression of the varisin gene was silenced by RNA interference (RNAi) in which male ticks were injected with varisin dsRNA and then …

Historical Mammal Extinction On Christmas Island (Indian Ocean) Correlates With Introduced Infectious Disease, Kelly B. Wyatt, Paula F. Campos, M. Thomas P. Gilbert, Sergios-Orestis Kolokotronis, Wayne H. Hynes, Rob Desalle, Peter Daszak, Ross D.E. Macphee, Alex D. Greenwood

Biological Sciences Faculty Publications

It is now widely accepted that novel infectious disease can be a leading cause of serious population decline and even outright extinction in some invertebrate and vertebrate groups (e. g., amphibians). In the case of mammals, however, there are still no well-corroborated instances of such diseases having caused or significantly contributed to the complete collapse of species. A case in point is the extinction of the endemic Christmas Island rat (Rattus macleari): although it has been argued that its disappearance ca. AD 1900 may have been partly or wholly caused by a pathogenic trypanosome carried by fleas hosted …

Anther Appendages Of Incarvillea Trigger A Pollen-Dispensing Mechanism, Yi Han, Can Dai, Chun-Feng Yang, Qing-Feng Wang, Timothy J. Motley

Biological Sciences Faculty Publications

Background and Aims Anther appendages play diverse roles in anther dehiscence and pollen dispersal. This study aims to explore the pollen-dispensing mechanism triggered by special anther appendages in Incarvillea arguta.

Methods Field studies were conducted to record floral characteristics, pollinator visitations, and flower-pollinator interactions. Measurements of flowers and pollinators were analysed statistically. Pollen counts following a series of floral manipulations were used to evaluate pollen dispensing efficiency and function of the anther appendages.

Key Results Field observations determined that two species of Bombus (bumble-bees) were the primary pollinators of I. arguta with a mean visiting frequency of 1.42 visitations …

Oviposition Behavior Partitions Aquatic Landscapes Along Predation And Nutrient Gradients, C. A. Binckley, W. J. Resetarits Jr.

Biological Sciences Faculty Publications

That individuals attempt to minimize the ratio of mortality risk/growth rate (μ/g) when foraging within individual habitat patches is well established. Do species partition among spatially discrete communities embedded in complex landscapes in a similar manner? We investigated how 3 ovipositing species (2 Hyla treefrogs and a hydrophilid beetle, Tropisternus lateralis) responded to simultaneous gradients of nutrients and predation risk. Species partitioned our experimental metacommunity primarily by reducing oviposition with fish. Tropisternus positively responded to increased nutrients, but the effect decreased with increasing risk, as predicted by μ/g theory. Use of fish habitats by Tropisternus was unrelated to breeding …

Population Ecology Of The Golden Mouse, Robert K. Rose

Biological Sciences Faculty Publications

An understanding of the population dynamics of a species requires knowledge of the major life-history parameters of a population, including age at maturity, distribution of age classes, and lifetime reproductive contribution of the sexes, sex ratio, length of the breeding season, mean litter size, rates of growth and survival, and life span. Because few long-term studies have been conducted with Ochrotomys nuttalli as the focal species of investigation, only fragmentary information is available for many population parameters. As importantly, densities of golden mice often are low, making them difficult to evaluate statistically. Little has been published on age at maturity …

Emergent Behavior In Massively-Deployed Sensor Networks, Ekaterina Shurkova, Ruzana Ishak, Stephan Olariu, Shaharuddin Salleh

Computer Science Faculty Publications

The phenomenal advances in MEMS and nanotechnology make it feasible to build small devices, referred to as sensors that are able to sense, compute and communicate over small distances. The massive deployment of these small devices raises the fascinating question of whether or not the sensors, as a collectivity, will display emergent behavior, just as living organisms do. In this work we report on a recent effort intended to observe emerging behavior of large groups of sensor nodes, like living cells demonstrate. Imagine a massive deployment of sensors that can be in two states "red" and "blue". At deployment time …

Circulation, Vol. 14, No. 3, Center For Coastal Physical Oceanography, Old Dominion University, S. Sackett, J. L. Blanco

CCPO Circulation

Fall 2007 issue of CCPO Circulation featuring article "Analysis of Time Series Data from the Chesapeake Bay Mouth Cruises" by S. Sackett and J. L. Blanco

The Effects Of Collective Efficacy And Dissatisfaction With Law Enforcement On Neighborhood Crime Rates, Kelly E. Cobb

Sociology & Criminal Justice Theses & Dissertations

The purpose of this thesis was to examine the effects of collective efficacy and dissatisfaction with law enforcement on neighborhood crime rates. A data set was obtained from the Inter-University Consortium for Political and Social Research titled, Project on Human Development in Chicago Neighborhoods: Community Survey 1994-1995 (PHDCN). This is one of the only studies which ask specific questions concerning collective efficacy and dissatisfaction with law enforcement, accompanied with a large, diverse sample. This research is important because it looks at two concepts, collective efficacy and dissatisfaction with law enforcement and their combined effect on neighborhood crime rates; violent …

Limb Regeneration After Multiple Autotomy And Coxae Removal In The Blue Crab Callinectes Sapidus, Jennifer Ambler

OES Theses and Dissertations

This study investigated limb regeneration in the juvenile blue crab, Callinectes sapidus, specifically the role of the coxa and pedal nerve innervation of the regenerative limb bud over time. The coxa is a leg segment that has been defined as the source of positional, cellular, and neuronal information needed for limb regeneration in brachyuran crabs. This study indicates that removal of coxae under regenerative and non-regenerative conditions did not deter limb regeneration. The coxa is not the exclusive location of limb regenerative information since limbs re-grew with normal positional and functional arrangement in 86% of crabs showing regeneration at removal …

Seasonal Variation In Diet Of The Cotton Rat (Sigmodon Hispidus) Based On Fecal Analysis, Lynn A. Walker

Biological Sciences Theses & Dissertations

Cotton rats, Sigmodon hispidus, live in oldfields, habitats with a variety of mostly herbaceous plants. Based on other studies, the hispid cotton rat eats predominantly grasses, but grasses rarely are the only food. Fecal samples were collected each month during an ongoing capture-mark-release demographic study of the rodent community at a location in southern Chesapeake, Virginia. In the lab, five fecal pellets per animal were stained, placed on a microscope slide, and covered with starch-gel medium and coverslip. Then a clear nail polish was applied to produce a semi-permanent slide. Using a microscope and a set of reference slides, plant …

Neighborhood Defined Adaboost Based Mixture Of Color Components For Efficient Skin Segmentation, Ramya Reddy Maaram

Electrical & Computer Engineering Theses & Dissertations

A skin segmentation algorithm robust to illumination changes and skin-like backgrounds is developed in this thesis. So far skin pixel classification has been limited to only individual color spaces and there has not been a comprehensive evaluation of which color components or combination of color components would provide the best classification accuracy, Color components in a given color space form the feature set for the classification of skin pixels. The combination of the color components or the features present within a single color space may not be the best when it comes to skin pixel classification as the discriminatory power …