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Spatial Roost Networks And Resource Selection Of Female Wild Turkeys, Nicholas W. Bakner, Erin E. Ulrey, Patrick H. Wightman, Nick A. Gulotta, Bret A. Collier, Michael J. Chamberlain May 2024

Spatial Roost Networks And Resource Selection Of Female Wild Turkeys, Nicholas W. Bakner, Erin E. Ulrey, Patrick H. Wightman, Nick A. Gulotta, Bret A. Collier, Michael J. Chamberlain

Faculty Publications

Wildlife demography is influenced by behavioural decisions, with sleep being a crucial avian behaviour. Avian species use roost sites to minimize thermoregulation costs, predation risk and enhance foraging efficiency. Sleep locations are often reused, forming networks within the home range. Our study, focusing on female eastern wild turkeys (Meleagris gallopavo silvestris) during the reproductive season, used social network analysis to quantify both roost site selection and network structure. We identified roost networks which were composed of a small percentage of hub roost sites connecting satellite roosts. Hub roosts were characterized by greater values of betweenness (β = 0.62, s.e. = …


Molecular-Level Studies Of Nanopatterned Biomolecules With Atomic Force Microscopy, Ashley R. Walker May 2024

Molecular-Level Studies Of Nanopatterned Biomolecules With Atomic Force Microscopy, Ashley R. Walker

LSU Doctoral Dissertations

Atomic force microscopy (AFM) is an analytical technique in which a tipped probe is gently scanned across the surface in a raster pattern to generate digital images of a sample at the nanoscale. The AFM instrument has three general operational modes, which are contact, non-contact and tapping-mode, that can be used to examine materials at the atomic level. Single-molecular details of biological molecules and other soft organic materials can be captured with minimal denaturation in either ambient or liquid environments when using tapping-mode AFM. In tapping-mode, the probe is driven to oscillate vertically while the tip is scanned across the …


Top-Down Control Of Ammonia Oxidizers By Grazing In The North Pacific, Silin Ni, Min Nina Xu, Moge Du, Edward A. Laws, Shuh Ji Kao May 2024

Top-Down Control Of Ammonia Oxidizers By Grazing In The North Pacific, Silin Ni, Min Nina Xu, Moge Du, Edward A. Laws, Shuh Ji Kao

Faculty Publications

The impact of grazing pressure on ammonia oxidizers (AO) has never been quantified in the field. Here we develop a new method to quantify the grazing rates on AO in aquatic systems. We introduce 15NH4+ tracer into the traditional dilution experiments to measure AO's apparent growth rates by using the end-product of 15NH4+ oxidation, that is, 15NOx−. Field studies in the North Pacific revealed that 15NOx− in the end-product was sensitive enough to detect AO's grazing rates. Experiments from the lower euphotic zone showed NH4+ replete growth rates of 0.40 …


Complexity Of Avian Evolution Revealed By Family-Level Genomes, Josefin Stiller, Shaohong Feng, Al Aabid Chowdhury, Iker Rivas-González, David A. Duchêne, Qi Fang, Yuan Deng, Alexey Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M.T. Nguyen, Simon Y.W. Ho, Brant C. Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangji Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A. Ogilvie, Luay Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter A. Hosner, Rute R. Da Fonseca, Bent Petersen May 2024

Complexity Of Avian Evolution Revealed By Family-Level Genomes, Josefin Stiller, Shaohong Feng, Al Aabid Chowdhury, Iker Rivas-González, David A. Duchêne, Qi Fang, Yuan Deng, Alexey Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M.T. Nguyen, Simon Y.W. Ho, Brant C. Faircloth, Julia Haag, Peter Houde, Joel Cracraft, Metin Balaban, Uyen Mai, Guangji Chen, Rongsheng Gao, Chengran Zhou, Yulong Xie, Zijian Huang, Zhen Cao, Zhi Yan, Huw A. Ogilvie, Luay Nakhleh, Bent Lindow, Benoit Morel, Jon Fjeldså, Peter A. Hosner, Rute R. Da Fonseca, Bent Petersen

Faculty Publications

Despite tremendous efforts in the past decades, relationships among main avian lineages remain heavily debated without a clear resolution. Discrepancies have been attributed to diversity of species sampled, phylogenetic method and the choice of genomic regions1–3. Here we address these issues by analysing the genomes of 363 bird species4 (218 taxonomic families, 92% of total). Using intergenic regions and coalescent methods, we present a well-supported tree but also a marked degree of discordance. The tree confirms that Neoaves experienced rapid radiation at or near the Cretaceous–Palaeogene boundary. Sufficient loci rather than extensive taxon sampling were more effective …


Hydrodynamic And Biochemical Impacts On The Development Of Hypoxia In The Louisiana-Texas Shelf - Part 1: Roles Of Nutrient Limitation And Plankton Community, Yanda Ou, Z. George Xue May 2024

Hydrodynamic And Biochemical Impacts On The Development Of Hypoxia In The Louisiana-Texas Shelf - Part 1: Roles Of Nutrient Limitation And Plankton Community, Yanda Ou, Z. George Xue

Faculty Publications

A three-dimensional coupled hydrodynamic-biogeochemical model with multiple nutrient and plankton functional groups was developed and adapted to the Gulf of Mexico to investigate the role of nutrients and the complexity of plankton community in dissolved oxygen (DO) dynamics. A 15-year hindcast was achieved covering the period of 2006-2020. Extensive model validation against in situ data demonstrates that the model was capable of reproducing vertical distributions of DO and spatial distributions of bottom DO concentration, as well as their interannual variations. The study demonstrates that bottom DO dynamics and hypoxia evolution are significantly influenced by both physical processes and local biochemistry, …


Trophic Interactions In Microbiomes Influence Plant Host Population Size And Ecosystem Function, Jiaqi Tan, Na Wei, Martin M. Turcotte May 2024

Trophic Interactions In Microbiomes Influence Plant Host Population Size And Ecosystem Function, Jiaqi Tan, Na Wei, Martin M. Turcotte

Faculty Publications

Plant microbiomes that comprise diverse microorganisms, including prokaryotes, eukaryotes and viruses, are the key determinants of plant population dynamics and ecosystem function. Despite their importance, little is known about how species interactions (especially trophic interactions) between microbes from different domains modify the importance of microbiomes for plant hosts and ecosystems. Using the common duckweed Lemna minor, we experimentally examined the effects of predation (by bacterivorous protists) and parasitism (by bacteriophages) within microbiomes on plant population size and ecosystem phosphorus removal. Our results revealed that the addition of predators increased plant population size and phosphorus removal, whereas the addition of parasites …


Extreme Climate Events And Agricultural Commodity Markets, Mohammad Abir Chowdhury Shovon May 2024

Extreme Climate Events And Agricultural Commodity Markets, Mohammad Abir Chowdhury Shovon

LSU Master's Theses

This article investigates the impact of extreme climate events on U.S. agricultural commodity markets, specifically focusing on corn and soybeans. Using event study methods and a comprehensive dataset of 254 extreme climate events for corn as well as 250 extreme climate events for soybeans in top ten corn & soybeans producing states of the USA between 1995 and 2023, we examine how storms, floods, extreme temperatures, and droughts affect the abnormal returns of these commodities. Our findings indicate that 22.04% of climate events significantly impact corn returns and 21.20% of climate events have significant impact on soybeans returns. Notably, extreme …


Pregnant Black Bodies In Peril: A Multi-Method Analysis Of Obstetric Outcomes And Gestational Experiences, Courtney E. Williams May 2024

Pregnant Black Bodies In Peril: A Multi-Method Analysis Of Obstetric Outcomes And Gestational Experiences, Courtney E. Williams

LSU Doctoral Dissertations

My multi-method three-paper dissertation provides a better understanding of the relationship between maternal racial identity, obstetric outcomes, and gestational experiences. Using birth certificate data from the 2016 U.S. National Vital Statistics System and binary logistic regression models, in the first paper I explore heterogeneity in severe maternal morbidity (SMM) by maternal race, maternal education, and maternal age. To complement the first paper, in the second paper I allow 35 Black and White women/birthing people to describe pregnancy, birth, and early motherhood in their own words. I situate the Covid-19 pandemic as a unique cultural backdrop in this qualitative paper to …


Characteristics Influencing Enrollment Choices: A Mixed Methods Analysis Of Factors That Influence Black Students' Decision To Enroll In College Of Agriculture Programs, Jennifer L. Brown May 2024

Characteristics Influencing Enrollment Choices: A Mixed Methods Analysis Of Factors That Influence Black Students' Decision To Enroll In College Of Agriculture Programs, Jennifer L. Brown

LSU Doctoral Dissertations

This study aims to identify the barriers that affect Minority enrollment in agriculture, particularly focusing on increasing the enrollment of Black students. There is a significant concern regarding the gap between Black individuals and agriculture enrollment in post-secondary agriculture programs at land-grant institutions. The purpose of this mixed method phenomenology was to (1) identify factors that influence the decision of Black students to enroll in the College of Agriculture and (2) uncover the societal and economic influences that continue to serve as barriers to Black students’ enrolling in agriculture. The quantitative portion of the investigation utilized a web-based instrument structured …


Synthesis And Regioselective Functionalization Of Tetrafluorobenzo-[Α]-Fused Bopypy Dyes, Sebastian O. Oloo, Guanyu Zhang, Petia Bobadova-Parvanova, Seleen Al Horani, Masa Al Horani, Frank R. Fronczek, Kevin M. Smith, Maria Da Graça H. Vicente May 2024

Synthesis And Regioselective Functionalization Of Tetrafluorobenzo-[Α]-Fused Bopypy Dyes, Sebastian O. Oloo, Guanyu Zhang, Petia Bobadova-Parvanova, Seleen Al Horani, Masa Al Horani, Frank R. Fronczek, Kevin M. Smith, Maria Da Graça H. Vicente

Faculty Publications

The synthesis of a new bis-BF2 tetrafluorobenzo-[α]-fused BOPYPY dye from 4,5,6,7-tetrafluoroisoindole and 2-hydrazinopyrazine is reported. The regioselectivity of nucleophilic substitution reactions at the periphery of the tetrafluorinated BOPYPY and its α-bromo derivative were investigated using N-, O-, S-, and C-based nucleophiles. Among the aromatic fluorine atoms, the F2 atom is consistently regioselectively substituted, except when the α-position contains a thiophenol group; in this case, F4 is substituted instead due to stabilizing π-π-stacking between the two aromatic groups. The α-bromo BOPYPY derivative also reacts under Stille cross-coupling reaction conditions to produce the corresponding α-substituted product. The spectroscopic properties of …


The Effect Of A Lactobacillus Containing Gel On The Clitoral Microbiome Of The Mare, Fiona E. Herzog May 2024

The Effect Of A Lactobacillus Containing Gel On The Clitoral Microbiome Of The Mare, Fiona E. Herzog

LSU Master's Theses

The equine lower reproductive tract harbors bacterial populations that serve as a reservoir for potential pathogens. Dysbiosis of urogenital sites may play a role in reproductive disease of the mare, including endometritis. Metagenetic studies have evaluated microbiomes in the uterus, vagina and placenta, while the clitoral microbiome has yet to be described. In this study, the following hypotheses were tested; 1) the clitoris harbors a unique microbiome, 2) topical Lactobacillus genus complex (LGC) probiotic will alter this microbiome, 3) acceptable per cycle pregnancy rates (PCPR) following probiotic application will be achieved. Reproductively normal mares (n=14) were selected, and clitoral fossa …


An Analysis Of The Musical Gestures In Osvaldo Golijov’S The Dreams And Prayers Of Isaac The Blind And Their Relationship To The Kabbalah Sefirot, Jeremy Gdaniec May 2024

An Analysis Of The Musical Gestures In Osvaldo Golijov’S The Dreams And Prayers Of Isaac The Blind And Their Relationship To The Kabbalah Sefirot, Jeremy Gdaniec

LSU Doctoral Dissertations

Osvlado Golijov’s The Dreams and Prayers of Isaac the Blind, scored for klezmer clarinet and string quartet, remains one of his most influential works since its premier in 1994. Inspiration for the work came from the writings of Rabbi Isaac the Blind, a prominent 13th century figurehead in the branch of Jewish mysticism known as Kabbalah. In Kabbalah, symbols known as the sefirot are emanations of creation and the key to unlocking the divine secrets of the God-head. The analysis presented in this document combines musical gesture theory with Kabbalistic concepts for new perspectives on Golijov’s …


Examining The Authenticity Of The 'Ether Model' In Certain O-Glycosylation Reactions, Varad Vinayak Agarkar May 2024

Examining The Authenticity Of The 'Ether Model' In Certain O-Glycosylation Reactions, Varad Vinayak Agarkar

LSU Doctoral Dissertations

Acinetobacter baumannii is a gram-negative bacterium species that is responsible for nosocomial infections. It has shown antibiotic resistance and has been designated an urgent threat by the CDC. In Chapter 1, I highlight my efforts in the synthesis of a Kdo building block in the journey towards the construction of an A. baumannii lipooligosaccharide (LOS) core pentasaccharide- a potential candidate for glycoconjugate vaccine against A. baumannii infection. I talk about various optimizations and improvements in the Kdo monosaccharide synthesis and the mechanistic insights I provided about a critical transformation in the synthetic sequence.

Chemical O-glycosylation is a significant research …


Temporal Dynamics Of The Multi-Omic Response To Endurance Exercise Training, David Amar, Nicole R. Gay, Pierre M. Jean-Beltran, Dam Bae, Surendra Dasari, Courtney Dennis, Charles R. Evans, David A. Gaul, Olga Ilkayeva, Anna A. Ivanova, Maureen T. Kachman, Hasmik Keshishian, Ian R. Lanza, Ana C. Lira, Michael J. Muehlbauer, Venugopalan D. Nair, Paul D. Piehowski, Jessica L. Rooney, Kevin S. Smith, Cynthia L. Stowe, Bingqing Zhao, Natalie M. Clark, David Jimenez-Morales, Malene E. Lindholm, Gina M. Many, James A. Sanford, Gregory R. Smith, Nikolai G. Vetr, Tiantian Zhang, Jose J. Almagro Armenteros, Julian Avila-Pacheco, Nasim Bararpour, Yongchao Ge, Zhenxin Hou May 2024

Temporal Dynamics Of The Multi-Omic Response To Endurance Exercise Training, David Amar, Nicole R. Gay, Pierre M. Jean-Beltran, Dam Bae, Surendra Dasari, Courtney Dennis, Charles R. Evans, David A. Gaul, Olga Ilkayeva, Anna A. Ivanova, Maureen T. Kachman, Hasmik Keshishian, Ian R. Lanza, Ana C. Lira, Michael J. Muehlbauer, Venugopalan D. Nair, Paul D. Piehowski, Jessica L. Rooney, Kevin S. Smith, Cynthia L. Stowe, Bingqing Zhao, Natalie M. Clark, David Jimenez-Morales, Malene E. Lindholm, Gina M. Many, James A. Sanford, Gregory R. Smith, Nikolai G. Vetr, Tiantian Zhang, Jose J. Almagro Armenteros, Julian Avila-Pacheco, Nasim Bararpour, Yongchao Ge, Zhenxin Hou

Clinical Research Faculty Publications

Regular exercise promotes whole-body health and prevents disease, but the underlying molecular mechanisms are incompletely understood1–3. Here, the Molecular Transducers of Physical Activity Consortium4 profiled the temporal transcriptome, proteome, metabolome, lipidome, phosphoproteome, acetylproteome, ubiquitylproteome, epigenome and immunome in whole blood, plasma and 18 solid tissues in male and female Rattus norvegicus over eight weeks of endurance exercise training. The resulting data compendium encompasses 9,466 assays across 19 tissues, 25 molecular platforms and 4 training time points. Thousands of shared and tissue-specific molecular alterations were identified, with sex differences found in multiple tissues. Temporal multi-omic and multi-tissue analyses revealed expansive biological …


Restricting Bioenergetic Efficiency Enhances Longevity And Mitochondrial Redox Capacity In Drosophila Melanogaster, Analisa L. Taylor, Olga Dubuisson, Pritika Pandey, Elizabeth R.M. Zunica, Bolormaa Vandanmagsar, Wagner S. Dantas, Alyssa Johnson, Christopher L. Axelrod, John P. Kirwan May 2024

Restricting Bioenergetic Efficiency Enhances Longevity And Mitochondrial Redox Capacity In Drosophila Melanogaster, Analisa L. Taylor, Olga Dubuisson, Pritika Pandey, Elizabeth R.M. Zunica, Bolormaa Vandanmagsar, Wagner S. Dantas, Alyssa Johnson, Christopher L. Axelrod, John P. Kirwan

Division of Basic Science Faculty Publications

Mitochondria are essential for survival and as such, impairments in organelle homeostasis significantly accelerate age-related morbidity and mortality. Here, we determined the contribution of bioenergetic efficiency to life span and health span in Drosophila melanogaster utilizing the mitochondrial uncoupler BAM15. Life span was determined in flies fed a normal diet (ND) or high fat diet (HFD) supplemented with vehicle or BAM15. Locomotor function was determined by negative geotaxis assay in middle-aged flies fed vehicle or BAM15 under ND or HFD conditions. Redox capacity (high-resolution respirometry/fluorometry), citrate synthase (enzyme activity), mtDNA content (qPCR), gene expression (qPCR), and protein expression (western blot) …


Detection Of Ochyromera Ligustri (Coleoptera: Curculionidae: Curculioninae) In Ligustrum Spp. (Oleaceae) Using Newly Developed Pcr Primers, Ilgoo Kang, Amy Roda, Brandi Misiaszek, Tanner Sparks, Rodrigo Diaz May 2024

Detection Of Ochyromera Ligustri (Coleoptera: Curculionidae: Curculioninae) In Ligustrum Spp. (Oleaceae) Using Newly Developed Pcr Primers, Ilgoo Kang, Amy Roda, Brandi Misiaszek, Tanner Sparks, Rodrigo Diaz

Faculty Publications

Ligustrum spp. (Oleaceae) have become invasive species in the US and negatively affect native plant diversity and richness in forests. Ochyromera ligustri (Coleoptera: Curculionidae) is considered a potential biological control agent in the US because adults feed on the foliage and larvae are seed-feeders of Ligustrum spp. To discover the relationships between O. ligustri and Ligustrum spp., fruit dissections or rearing and field observations are required. In the current research project, novel PCR primers were developed to rapidly detect the DNA of O. ligustri in molecular analyses without rearing and observation. The developed PCR primers worked even with 0.01 ng …


Mapping And Omics Integration: Towards Precise Rice Disease Resistance Breeding, John Christian Ontoy, Jong Hyun Ham May 2024

Mapping And Omics Integration: Towards Precise Rice Disease Resistance Breeding, John Christian Ontoy, Jong Hyun Ham

Faculty Publications

Rice (Oryza sativa), as a staple crop feeding a significant portion of the global population, particularly in Asian countries, faces constant threats from various diseases jeopardizing global food security. A precise understanding of disease resistance mechanisms is crucial for developing resilient rice varieties. Traditional genetic mapping methods, such as QTL mapping, provide valuable insights into the genetic basis of diseases. However, the complex nature of rice diseases demands a holistic approach to gain an accurate knowledge of it. Omics technologies, including genomics, transcriptomics, proteomics, and metabolomics, enable a comprehensive analysis of biological molecules, uncovering intricate molecular interactions within the rice …


Exploring Pathways Toward Open-Hardware Ecosystems To Safeguard Genetic Resources For Biomedical Research Communities Using Aquatic Model Species, Yue Liu, Jack C. Koch, Lucía Arregui, Allyssa Oune, Sarah Bodenstein, Maria T. Gutierrez-Wing, Terrence R. Tiersch May 2024

Exploring Pathways Toward Open-Hardware Ecosystems To Safeguard Genetic Resources For Biomedical Research Communities Using Aquatic Model Species, Yue Liu, Jack C. Koch, Lucía Arregui, Allyssa Oune, Sarah Bodenstein, Maria T. Gutierrez-Wing, Terrence R. Tiersch

Faculty Publications

Development of reliable germplasm repositories is critical for preservation of genetic resources of aquatic species, which are widely utilized to support biomedical innovation by providing a foundational source for naturally occurring variation and development of new variants through genetic manipulations. A significant barrier in repository development is the lack of cryopreservation capability and reproducibility across the research community, posing great risks of losing advances developed from billions of dollars of research investment. The emergence of open scientific hardware has fueled a new movement across biomedical research communities. With the increasing accessibility of consumer-level fabrication technologies, such as three-dimensional printers, open …


Sexual Orientation-Based Microaggressions And Cannabis Use Outcomes Among Sexual Minority Individuals: The Impact Of Negative Affect And Coping-Motivated Cannabis Use, Evan M. Threeton, Paige E. Morris, Julia D. Buckner May 2024

Sexual Orientation-Based Microaggressions And Cannabis Use Outcomes Among Sexual Minority Individuals: The Impact Of Negative Affect And Coping-Motivated Cannabis Use, Evan M. Threeton, Paige E. Morris, Julia D. Buckner

Faculty Publications

Introduction: Sexual minority individuals report significantly more cannabis use and problems than their heterosexual peers, possibly due to their frequent experiences with sexual orientation-based microaggressions. As a result, sexual minority individuals may turn to cannabis use to cope with the negative affect associated with these experiences. No known studies have tested this hypothesis; therefore, the current study tested if sexual orientation microaggressions are positively associated with negative affect (anxiety and depression), cannabis coping motives, and cannabis-related outcomes (frequency, problems); if coping motives are positively associated with cannabis-related outcomes; and if negative affect and cannabis use to cope with negative affect …


Kat8 Beyond Acetylation: A Survey Of Its Epigenetic Regulation, Genetic Variability, And Implications For Human Health, Lindsey Yoo, David Mendoza, Allison J. Richard, Jacqueline M. Stephens May 2024

Kat8 Beyond Acetylation: A Survey Of Its Epigenetic Regulation, Genetic Variability, And Implications For Human Health, Lindsey Yoo, David Mendoza, Allison J. Richard, Jacqueline M. Stephens

Division of Basic Science Faculty Publications

Lysine acetyltransferase 8, also known as KAT8, is an enzyme involved in epigenetic regulation, primarily recognized for its ability to modulate histone acetylation. This review presents an overview of KAT8, emphasizing its biological functions, which impact many cellular processes and range from chromatin remodeling to genetic and epigenetic regulation. In many model systems, KAT8’s acetylation of histone H4 lysine 16 (H4K16) is critical for chromatin structure modification, which influences gene expression, cell proliferation, differentiation, and apoptosis. Furthermore, this review summarizes the observed genetic variability within the KAT8 gene, underscoring the implications of various single nucleotide polymorphisms (SNPs) that affect its …


Transitioning From A Research Protocol To A Scalable Applied Pathway For Xenopus Laevis Sperm Cryopreservation At A National Stock Center: The Effect Of Cryoprotectants, Lucía Arregui, Jack C. Koch, Terrence R. Tiersch May 2024

Transitioning From A Research Protocol To A Scalable Applied Pathway For Xenopus Laevis Sperm Cryopreservation At A National Stock Center: The Effect Of Cryoprotectants, Lucía Arregui, Jack C. Koch, Terrence R. Tiersch

Faculty Publications

Sperm cryopreservation is a critical tool for safeguarding and managing valuable genetic resources. Protocols for cryopreservation of Xenopus laevis sperm were available but lacking sperm quality evaluation and scalability and the outcomes were inconsistent. The goal of this study was to begin developing a center-level cryopreservation pathway for this species by integrating French straws as containers that would facilitate germplasm repository development. The objectives were to analyze the effect of: (1) three sperm concentrations (33, 50, and 100 × 106 sperm/mL) on post-thaw fertilization, (2) three final concentrations (2.5%, 5%, and 10%) of dimethyl sulfoxide, methanol, and dimethylformamide (DMFA) on …


Energy Compensation For Crop Growth Under Plastic Mulching: Theories, Models, And Limitations, Dianyuan Ding, Ting Li, Lihong Wu, Xi Zhang, Ying Zhao, Hao Feng, Chao Zhang, Ole Wendroth May 2024

Energy Compensation For Crop Growth Under Plastic Mulching: Theories, Models, And Limitations, Dianyuan Ding, Ting Li, Lihong Wu, Xi Zhang, Ying Zhao, Hao Feng, Chao Zhang, Ole Wendroth

Faculty Publications

Plastic film mulching (PM) is a useful agronomic means to adapt to the environmental conditions of dryland agriculture and improve crop production. To improve the theoretical framework of PM technology, this study focuses on the interaction between the soil temperature change caused by PM and crop growth. The definition, action mechanism, and simulation of the compensatory effect of PM on growing degree days are introduced to reveal the effect of soil temperature under PM on crop development and growth. Our summary shows that the strength of the warming effect changes with the growth and development of crops, strengthening during the …


Song And Genetic Divergence Within A Subspecies Of White-Crowned Sparrow (Zonotrichia Leucophrys Nuttalli), Amy Rongyan Luo, Sara Lipshutz, Jennifer Phillips, Robb T. Brumfield, Elizabeth Perrault Derryberry May 2024

Song And Genetic Divergence Within A Subspecies Of White-Crowned Sparrow (Zonotrichia Leucophrys Nuttalli), Amy Rongyan Luo, Sara Lipshutz, Jennifer Phillips, Robb T. Brumfield, Elizabeth Perrault Derryberry

Faculty Publications

Animal culture evolves alongside genomes, and the two modes of inheritance-culture and genes-interact in myriad ways. For example, stable geographic variation in culture can act as a reproductive barrier, thereby facilitating genetic divergence between "cultural populations."White-crowned sparrows (Zonotrichia leucophrys) are a well-established model species for bird song learning and cultural evolution, as they have distinct, geographically discrete, and culturally transmitted song types (i.e., song dialects). In this study, we tested the hypothesis that divergence between culturally transmitted songs drives genetic divergence within Nuttall's white-crowned sparrows (Z. l. nuttalli). In accordance with sexual selection theory, we hypothesized that cultural divergence between …


Associations Of Epigenetic Age Acceleration With Cvd Risks Across The Lifespan: The Bogalusa Heart Study, Xiao Sun, Wei Chen, Alexander C. Razavi, Mengyao Shi, Yang Pan, Changwei Li, Maria Argos, Brian T. Layden, Martha L. Daviglus, Jiang He, Owen T. Carmichael, Lydia A. Bazzano, Tanika N. Kelly May 2024

Associations Of Epigenetic Age Acceleration With Cvd Risks Across The Lifespan: The Bogalusa Heart Study, Xiao Sun, Wei Chen, Alexander C. Razavi, Mengyao Shi, Yang Pan, Changwei Li, Maria Argos, Brian T. Layden, Martha L. Daviglus, Jiang He, Owen T. Carmichael, Lydia A. Bazzano, Tanika N. Kelly

Clinical Research Faculty Publications

Although epigenetic age acceleration (EAA) might serve as a molecular signature of childhood cardiovascular disease (CVD) risk factors and further promote midlife subclinical CVD, few studies have comprehensively examined these life course associations. This study sought to test whether childhood CVD risk factors predict EAA in adulthood and whether EAA mediates the association between childhood CVD risks and midlife subclinical disease. Among 1,580 Bogalusa Heart Study participants, we estimated extrinsic EAA, intrinsic EAA, PhenoAge acceleration (PhenoAgeAccel), and GrimAge acceleration (GrimAgeAccel) during adulthood. We tested prospective associations of longitudinal childhood body mass index (BMI), blood pressure, lipids, and glucose with EAAs …


The Cospar Planetary Protection Policy For Missions To Icy Worlds: A Review Of History, Current Scientific Knowledge, And Future Directions, P. T. Doran, A. Hayes, O. Grasset, A. Coustenis, O. Prieto-Ballesteros, N. Hedman, O. Al Shehhi, E. Ammannito, M. Fujimoto, F. Groen, J. E. Moores, C. Mustin, K. Olsson-Francis, J. Peng, K. Praveenkumar, P. Rettberg, S. Sinibaldi, V. Ilyin, F. Raulin, Y. Suzuki, K. Xu, L. G. Whyte, M. Zaitsev, J. Buffo, G. Kminek, B. Schmidt May 2024

The Cospar Planetary Protection Policy For Missions To Icy Worlds: A Review Of History, Current Scientific Knowledge, And Future Directions, P. T. Doran, A. Hayes, O. Grasset, A. Coustenis, O. Prieto-Ballesteros, N. Hedman, O. Al Shehhi, E. Ammannito, M. Fujimoto, F. Groen, J. E. Moores, C. Mustin, K. Olsson-Francis, J. Peng, K. Praveenkumar, P. Rettberg, S. Sinibaldi, V. Ilyin, F. Raulin, Y. Suzuki, K. Xu, L. G. Whyte, M. Zaitsev, J. Buffo, G. Kminek, B. Schmidt

Faculty Publications

Recent discoveries related to the habitability and astrobiological relevance of the outer Solar System have expanded our understanding of where and how life may have originated. As a result, the Icy Worlds of the outer Solar System have become among the highest priority targets for future spacecraft missions dedicated to astrobiology-focused and/or direct life detection objectives. This, in turn, has led to a renewed interest in planetary protection concerns and policies for the exploration of these worlds and has been a topic of discussion within the COSPAR (Committee on Space Research) Panel on Planetary Protection. This paper summarizes the results …


Complementing Model Species With Model Clades, Makenzie E. Mabry, R. Shawn Abrahams, Ihsan A. Al-Shehbaz, William J. Baker, Simon Barak, Michael S. Barker, Russell L. Barrett, Aleksandra Beric, Samik Bhattacharya, Sarah B. Carey, Gavin C. Conant, John G. Conran, Maheshi Dassanayake, Patrick P. Edger, Jocelyn C. Hall, Yue Hao, Kasper P. Hendriks, Julian M. Hibberd, Graham J. King, Daniel J. Kliebenstein, Marcus A. Koch, Ilia J. Leitch, Frederic Lens, Martin A. Lysak, Alex C. Mcalvay, Michael T.W. Mckibben, Francesco Mercati, Richard C. Moore, Klaus Mummenhoff, Daniel J. Murphy, Lachezar A. Nikolov, Michael Pisias, Eric H. Roalson May 2024

Complementing Model Species With Model Clades, Makenzie E. Mabry, R. Shawn Abrahams, Ihsan A. Al-Shehbaz, William J. Baker, Simon Barak, Michael S. Barker, Russell L. Barrett, Aleksandra Beric, Samik Bhattacharya, Sarah B. Carey, Gavin C. Conant, John G. Conran, Maheshi Dassanayake, Patrick P. Edger, Jocelyn C. Hall, Yue Hao, Kasper P. Hendriks, Julian M. Hibberd, Graham J. King, Daniel J. Kliebenstein, Marcus A. Koch, Ilia J. Leitch, Frederic Lens, Martin A. Lysak, Alex C. Mcalvay, Michael T.W. Mckibben, Francesco Mercati, Richard C. Moore, Klaus Mummenhoff, Daniel J. Murphy, Lachezar A. Nikolov, Michael Pisias, Eric H. Roalson

Faculty Publications

Model species continue to underpin groundbreaking plant science research. At the same time, the phylogenetic resolution of the land plant tree of life continues to improve. The intersection of these 2 research paths creates a unique opportunity to further extend the usefulness of model species across larger taxonomic groups. Here we promote the utility of the Arabidopsis thaliana model species, especially the ability to connect its genetic and functional resources, to species across the entire Brassicales order. We focus on the utility of using genomics and phylogenomics to bridge the evolution and diversification of several traits across the Brassicales to …


Dispersal Sweepstakes: Biotic Interchange Propelled Air-Breathing Fishes Across The Globe, Richard C. Harrington, Matthew Kolmann, Julia J. Day, Brant C. Faircloth, Matt Friedman, Thomas J. Near May 2024

Dispersal Sweepstakes: Biotic Interchange Propelled Air-Breathing Fishes Across The Globe, Richard C. Harrington, Matthew Kolmann, Julia J. Day, Brant C. Faircloth, Matt Friedman, Thomas J. Near

Faculty Publications

Aim: Biotic interchanges between Africa, India, and Eurasia are central to explaining the present-day distribution and diversity of freshwater organisms across these landmasses. Synbranchiformes is a diverse and species-rich clade of freshwater acanthomorph fishes found on all southern continents except Antarctica, and include eel- and perch-like, air-breathing and non-air-breathing fishes. Lacking a comprehensive and resolved phylogeny of the entire clade, contemporary interpretations of synbranchiform biogeography invoke scenarios as disparate as Gondwanan vicariance and pan-global rafting to explain their modern-day distribution. Here, we study their biogeographic history of continental dispersal events and test whether these are associated with increases in lineage …


The Sequential Direct And Indirect Effects Of Mountain Uplift, Climatic Niche, And Floral Trait Evolution On Diversification Dynamics In An Andean Plant Clade, Agnes S. Dellinger, Laura Lagomarsino, Fabián Michelangeli, Stefan Dullinger, Stacey D. Smith May 2024

The Sequential Direct And Indirect Effects Of Mountain Uplift, Climatic Niche, And Floral Trait Evolution On Diversification Dynamics In An Andean Plant Clade, Agnes S. Dellinger, Laura Lagomarsino, Fabián Michelangeli, Stefan Dullinger, Stacey D. Smith

Faculty Publications

Why and how organismal lineages radiate is commonly studied through either assessing abiotic factors (biogeography, geomorphological processes, and climate) or biotic factors (traits and interactions). Despite increasing awareness that both abiotic and biotic processes may have important joint effects on diversification dynamics, few attempts have been made to quantify the relative importance and timing of these factors, and their potentially interlinked direct and indirect effects, on lineage diversification. We here combine assessments of historical biogeography, geomorphology, climatic niche, vegetative, and floral trait evolution to test whether these factors jointly, or in isolation, explain diversification dynamics of a Neotropical plant clade …


In The Spotlight—Early Career Researcher, Patricia Schneider May 2024

In The Spotlight—Early Career Researcher, Patricia Schneider

Faculty Publications

No abstract provided.


Cellulose Nanofiber As Mask/Personal Protective Equipment Surface Agent For Enhanced Anti-Bacterial Performance, Sophia Jackson, Jonathan Chen May 2024

Cellulose Nanofiber As Mask/Personal Protective Equipment Surface Agent For Enhanced Anti-Bacterial Performance, Sophia Jackson, Jonathan Chen

Faculty Publications

The utilization of face-covering masks as an extended form of personal protective equipment has led to exponential waste measures during the COVID-19 pandemic, with estimations of up to 7200 tons of medical-type waste daily. A primary cause of this waste is surgical layered disposable masks that are constructed by melt-blown nonwovens usually made of non-biodegradable thermoplastic polymers like polypropylene. To increase widespread sustainable options to the public, commercialized or do-it-yourself-based fabric masks serve as a solution, but their resistance to harmful molecules is less than that of the medical-grade masks due to the fabric structure that leaves space for penetration. …