Digital Commons Network^™

Cpdna Supports The Identification Of The Major Lineages Of American Blechnum (Blechnaceae, Polypodiopsida) Established By Morphology, Jose Maria Gabriel Y Galan, Carmen Prada, Cristina Rolleri, Abdelkader Ainouche, Maria Vicent

Turkish Journal of Botany

Blechnaceae is an important leptosporangiate family (9-10 genera, about 250 species). It is monophyletic and distributed mainly in tropical America and Australasia. Among the species 80% belong to Blechnum, a genus with a very complex taxonomy and uncertain internal relationships. In terms of American diversity, the results of morphological studies have arrived at 8 informal groups. Molecular works on this genus are scarce, and there is no information for the majority of American species. The main objective of this work was to evaluate whether the groups proposed to organise the diversity of American of Blechnum are consistent with a molecular …

A New Species Of Astragalus (Fabaceae) From Turkey, Muhi̇tti̇n Di̇nç, Zeki̇ Aytaç, Süleyman Doğu

Turkish Journal of Botany

Astragalus silifkeense Dinç, Aytaç & Doğu, sp. nov. (Fabaceae, sect. Astragalus Bunge) is described as a new species from Silifke (Mersin Province), in southern Anatolia, Turkey. The new species is closely related to A. columnaris Boiss., endemic to Denizli in western Anatolia, and A. gilvus Boiss. in Ankara Province, Turkey. Taxonomic descriptions, as well as pollen and seed characters of the new species, are presented. The new species grows in an open Abies cilicica (Antoine & Kotschy) Carrière forest. The geographical distribution of the new species, along with that of A. columnaris and A. gilvus, is shown. The new species …

Pollen And Seed Morphology Of Resurrection Plants From The Genus Ramonda (Gesneriaceae): Relationship With Ploidy Level And Relevance To Their Ecology And Identification, Maja Lazarevic, Sonja Siljak - Yakovlev, Predrag Lazarevic, Branka Stevanovic, Vladimir Stevanovic

Turkish Journal of Botany

The pollen and seeds of 3 paleoendemic resurrection species, Ramonda myconi (L.) Rchb. (Iberian Peninsula), R. nathaliae Pancic & Petrovic, and R. serbica Pancic (Balkan Peninsula), as well as of natural hybrids between the 2 last species, have been analyzed using light and scanning electron microscopy. Their general structural differences, taxonomic and phylogenetic significance, pollen viability, and seed germination capacity, as well as the correlation of pollen and seed characteristics and plant ploidy levels, have been studied. The pollen grains are small (R. myconi, R. nathaliae) to medium (R. serbica) in size, ranging from 10 to 28 µm, and 3-colporate, …

A Further Analysis Of Secretory Structures Of Some Taxa Belonging To The Genus Hypericum (Clusiaceae) In Relation To The Leaf Vascular Pattern, Rosaria Perrone, Paolo De Rosa, Olga De Castro, Paolo Colombo

Turkish Journal of Botany

This work extends knowledge about the distribution of secretory structures (black nodules, translucent glands, and type A and B secretory canals) to other species of the genus Hypericum L., as only H. perforatum L. appears to have been widely investigated. Moreover, the current study was extended to include leaf vascular patterns. In the species studied, a possible correlation between the presence of black nodules and a particular biological form, that of hemicryptophytes scapose perennials such as H. perfoliatum L., H. perforatum L., H. pubescens Boiss., H. tetrapterum Fr., and H. triquetrifolium Turra, was noted. These black nodules are not present …

Identification Of Benzoin Obtained From Calli Of Styrax Officinalis By Hplc, Hati̇ce Demi̇ray, Ayli̇n Eşi̇z Dereboylu, Zeki̇ye Işin Yazici, Fati̇h Karabey

Turkish Journal of Botany

The stem tissue of Styrax officinalis L. distributed in West Anatolia was induced with agents such as boric acid and cocarboxylase (thiamine diphosphate), extensive stimulators of resin channels, in order to increase the amount of benzoin volatile oil. While the benzoin content was 120% in the induction medium to which excess boron and niacin were added, it increased to 231% when cocarboxylase (thiamine diphosphate) was added to the medium. Benzoin content of Styrax from petiole calli was 166%. HPLC-DAD results revealed that benzoin resin was present in 90% of the stems of Styrax officinalis distributed in West Anatolia. The major …

Morphological And Ecological Evidence For A New Infraspecific Taxon Of The Wallflower Erysimum Cheiri (Brassicaceae) As An Indigenous Endemism Of The Southwestern Mediterranean, Samira Ouarmim, Chloe Dubset, Errol Vela

Turkish Journal of Botany

The wallflower Erysimum cheiri is a horticultural cruciferous growing as garden-escaped with a wide distribution in West and South Europe. In Algeria, it is locally found on the northern cliffs of the National Park of Gouraya (Kabylia). The aim of this study is to compare the populations of E. cheiri identified in Algeria with those found in Mediterranean France. To study the differences between both sites, a morphological and ecological analysis was undertaken on 6 populations growing in Algeria and France. Ecological communities where wallflower is growing in Algeria are dominated by indigenous plants with a significant proportion of endemic …

A New Species And 2 New Records From Turkey, Zeki̇ Aytaç, Hayri̇ Duman

Turkish Journal of Botany

Campanula aktascii Aytaç & H.Duman (Campanulaceae) has been described as a new species. The diagnostic characters of C. aktascii were compared and discussed with its resembling species and the ecology and phenology of the new species were presented. Onopordum rhodense Boiss. ex Rech.f. (Asteraceae) and Daucus conchitae W.Greuter (Apiaceae) have been reported as a new records from Antalya (South Anatolia) for Turkey. The distribution map and Red List categories of these taxa according to the IUCN were also given.

Monitoring Of Vascular Plant Diversity In A Changing Climate In The Alpine Zone Of The Central Greater Caucasus, Khatuna Gigauri, Maia Akhalkatsi, George Nakhutsrishvili, Otar Abdaladze

Turkish Journal of Botany

Short-term changes in plant species number, cover, frequency, and composition were studied along an altitudinal gradient crossing 4 GLORIA summits (from 2240 m to 3024 m a.s.l.) from the treeline ecotone to the subnival zone in the Central Caucasus. Large-scale (summit area) and small-scale (16 plots of 1 m^{2}/summit) patterns were monitored in 2001. Recording was repeated in 2008. During the monitoring period, the average soil temperature and growing-degree days did not significantly increase. After 7 years, a revisitation of the summit area revealed a considerable increase of species richness, especially at the lower alpine zone (CP1 and CP2 summits). …

Shortcut To Long-Distance Developing Of A Tissue Culture Medium: Micropropagation Of Mature Almond Cultivars As A Case Study, Mehmet Nuri̇ Nas, Yüksel Bölek, Nevzat Sevgi̇n

Turkish Journal of Botany

Culture medium development methods are time-consuming, laborious, and require a large amount of experimental materials. The Nas hypothesis for the development of a micropropagation medium offers a less time-consuming and a less laborious approach. According to this hypothesis, the composition of a culture medium for a particular species should resemble the seed composition. In accordance with this hypothesis, first, an almond culture medium [Nas Almond Medium (NAM)] was developed based on almond kernel composition. Then, using mature tissues of almond cultivars, the growth of cultures on NAM was compared to that on Murashige and Skoog medium (MS), Woody Plant Medium …

Euglenozoa Occurring In Adzopé Reservoir, Côte D’Ivoire, Ble Alexis Tardy Kouassi, Allassane Ouattara, Kouhete Philippe Da

Turkish Journal of Botany

The Euglenozoa flora of the Adzope Reservoir in Côte d'Ivoire was investigated from January to December 2005. The species composition of the assemblage was compiled, accompanied by illustrations. Forty-four taxa were identified in the temporal survey. Ten taxa (22.22%) are new for Côte d'Ivoire. The taxonomic structure presents 22.32% of the species common to the freshwater of West Africa, with most of the taxa (89.5%) found to be cosmopolitan. An endemic taxon, Trachelomonas pisciformis var. bicoronata Coute & Iltis (Euglenaceae), was observed. The assemblage was dominated by Trachelomonas Ehrenberg and Phacus Ehrenberg, which represented 47.72% and 29.54% of identified taxa, …

The Utility Of Phosphoglucose Isomerase (Pgic) Intron Sequences In The Phylogenetics Of Physaria (Brassicaceae), Troy Joseph Mensen

Honors Program Theses

The main goal of this research was to determine if the PgiC gene region is useable for phylogenetic analyses. Phylogenetic analysis is done by creating phylogenetic trees based off certain gene regions and comparing it to previously created trees from other gene sequences. The DNA region could then be used in further experiments and research. In particular, this research will be beneficial for Dr. Steve O'Kane and others continuing explorations with the Physaria genus. Future researchers and Dr. O'Kane would be able to use the successful PgiC gene to have a more accurate idea of Physaria phylogeny. In the end, …

Natural Treatment Systems As Sustainable Ecotechnologies For The Developing Countries, Qaisar Mahmood, Arshid Pervez, Bibi Saima Zeb, Habiba Zaffar, Hajra Yaqoob, Muhammad Waseem, Zahidullah, Sumera Afsheen

Plant and Soil Sciences Faculty Publications

The purpose of natural treatment systems is the re-establishment of disturbed ecosystems and their sustainability for benefits to human and nature. The working of natural treatment systems on ecological principles and their sustainability in terms of low cost, low energy consumption, and low mechanical technology is highly desirable. The current review presents pros and cons of the natural treatment systems, their performance, and recent developments to use them in the treatment of various types of wastewaters. Fast population growth and economic pressure in some developing countries compel the implementation of principles of natural treatment to protect natural environment. The employment …

Factors Influencing The Establishment And Survival Of Native Hardwood Tree Seedlings Of The Kentucky Inner Bluegrass Blue Ash-Oak Savanna-Woodland, James D. Shaffer

Theses and Dissertations--Biology

Historically, the Kentucky Inner Bluegrass blue ash-oak savanna-woodland was the primary ecosystem of the Inner Bluegrass Region (IBR) of Kentucky. After European settlement, the majority (>99%) of Bluegrass savanna was converted to agricultural and urban land uses. Currently remnant savanna tree species are failing to recruit. Therefore, a long-term restoration ecology project researching competition and disturbance on seedling establishment, survival, and growth has been established at Griffith Woods (the largest remaining savanna in Kentucky) in Harrison Co., KY. Fourteen native hardwood tree species (a total of 6,168 seedlings) have been experimentally planted. Light, soil, surrounding vegetation, and herbivory, factors …

Taxonomy And Biogeography Of The New Caledonian Species Of Xylopia L. (Annonaceae), David M. Johnson, Jérôme Munzinger, Julie A. Peterson, Nancy A. Murray

Department of Entomology: Faculty Publications

A taxonomic review of the New Caledonian representatives of the pantropical tree genus Xylopia L. (Annonaceae) is presented based on museum study of 157 collections. Distinctions are clarified among the four endemic species, two of them previously undescribed in flower and two others described in the literature from only the type collections. A key and species descriptions are presented. Xylopia pancheri Baill., the most frequently collected species, occurs in maquis environments with ultramafic rocks in the central and southern regions of the island, as well as on the Ile des Pins. Xylopia vieillardii Baill. is widespread in low elevation humid …

Variants Of Triticum Mosaic Virus Isolated From Wheat In Colorado Show Divergent Biological Behavior, Dallas L. Seifers, Satyanarayana Tatineni, Roy French

Department of Plant Pathology: Faculty Publications

Triticum mosaic virus (TriMV) is a recently discovered virus infecting wheat. We compared Colorado isolates C10-492 and C11-775 with the 06-123 isolate. Comparisons were made using enzyme-linked immunosorbent assay (ELISA), infectivity assay, host range, dry weight (DW), inoculation of ‘Mace’ wheat with temperature-sensitive resistance to Wheat streak mosaic virus, and the deduced amino acid sequence of the coat proteins (CP) and P1 proteins. Both C10-492 and C11-775 infected ‘Gallatin’ barley and, when compared with 06-123, had significantly reduced ELISA values and virus titers in wheat. Both Colorado isolates caused symptomless infections in Mace, whereas 06- 123 caused mosaic symptoms. …

Spatio-Temporal Patterns Of Pre-Harvest Brown Rot Epidemics Within Individual Peach Tree Canopies, Sydney E. Everhart, A. Askew, L. Seymour, H. Scherm

Department of Plant Pathology: Faculty Publications

Tree canopies are architecturally complex and pose several challenges for measuring and character-izing spatial patterns of disease. Recently developed methods for fine-scale canopy mapping and three-dimensional spatial pattern analysis were applied in a 3-year study to characterize spatio-temporal development of pre-harvest brown rot of peach, caused by Monilinia fructicola, in 13 trees of different maturity classes. We observed a negative correlation between an index of disease aggregation and disease incidence in the same tree (r = −0.653, P < 0.0001), showing that trees with higher brown rot incidence had lower aggregation of affected fruit in their canopies. Significant (P ≤ 0.05) within-canopy aggregation among symptomatic fruit was most pronounced for early-maturing cultivars and/or early in the epidemic. This is consistent with the notion of a greater importance of localized, within-tree sources of inoculum at the beginning of the epidemic. Four of five trees having >10 blossom blight symptoms per tree showed a significant positive spatial association of pre-harvest fruit rot to blossom blight within the …

Modifying Lignin To Improve Bioenergy Feedstocks: Strengthening The Barrier Against Pathogens?, Scott E. Sattler, Deanna L. Funnell-Harris

Department of Plant Pathology: Faculty Publications

Lignin is a ubiquitous polymer present in cell walls of all vascular plants, where it rigidifies and strengthens the cell wall structure through covalent cross-linkages to cell wall polysaccharides. The presence of lignin makes the cell wall recalcitrant to conversion into fermentable sugars for bioenergy uses.Therefore, reducing lignin content and modifying its linkages have become major targets for bioenergy feedstock development through either biotechnology or traditional plant breeding. In addition, lignin synthesis has long been implicated as an important plant defense mechanism against pathogens, because lignin synthesis is often induced at the site of pathogen attack. This article explores the …

Product Comparison Of Foliar Fungicide Efficacy On Diseases Of Field Corn In Nebraska, 2012, C. M. Schleicher, T. A. Jackson-Ziems

Department of Plant Pathology: Faculty Publications

A foliar fungicide comparison trial was conducted at the University of Nebraska-Lincoln South Central Agricultural Laboratory near Clay Center, NE. DeKalb corn hybrid DKC 64-83, rating of “good” (6 out of 9) for gray leaf spot (GLS), “very good” (4 out of 9) for common rust (CR), and “good” (5 out of 9) for southern rust (SR), was planted on 26 Apr in 30-in. rows at a target population of 30,600 plants/A. The trial area was disked with corn as the previous year’s crop. Eleven treatments and a non-treated control were replicated six times in a randomized complete block design. …

Evaluation Of Application Timing On Stratego Yld Efficacy Of Field Corn In Nebraska, 2012, C. M. Schleicher, T. A. Jackson-Ziems

Department of Plant Pathology: Faculty Publications

A foliar fungicide timing trial was conducted at the University of Nebraska-Lincoln South Central Agricultural Laboratory near Clay Center, NE. DeKalb corn hybrid DKC 64-83, rating of “good” (6 out of 9) for gray leaf spot (GLS), “very good” (4 out of 9) for common rust (CR), and “good” (5 out of 9) for southern rust (SR), was planted on 26 Apr in 30-in. rows at a target population of 30,600 plants/A. The trial area was disked with corn as the previous year’s crop. Five foliar fungicide treatments and a non-treated control were replicated six times in a randomized complete …

Efficacy Evaluation Of Foliar Fungicide Products On Diseases Of Field Corn In Nebraska, 2012, C. M. Schleicher, T. A. Jackson-Ziems

Department of Plant Pathology: Faculty Publications

A foliar fungicide efficacy trial was conducted at the University of Nebraska-Lincoln South Central Agricultural Laboratory near Clay Center, NE. DeKalb corn hybrid DKC 64-83, rating of “good” (6 out of 9) for gray leaf spot (GLS), “very good” (4 out of 9) for common rust (CR), and “good” (5 out of 9) for southern rust (SR), was planted on 26 Apr in 30-in. rows at a target population of 30,600 plants/A. The trial area was disked with soybean as the previous year’s crop. Five foliar fungicide treatments and a nontreated control were replicated six times in a randomized complete …

Foliar Treatment Timing Trials For Management Of Goss’S Bacterial Wilt And Blight Of Field Corn In Nebraska, 2012, H. H. Oser, T. A. Jackson-Ziems, J. L. Brungardt

Department of Plant Pathology: Faculty Publications

One experimental hybrid, DKC 37-38, with a Goss’s wilt rating of 7 out of 9 (“poor”), was planted at the University of Nebraska Agricultural Research and Development Center (ARDC) near Mead, NE on 2 Jun. Corn was planted at 32,000 seeds per acre in a field that received minimum tillage. The previous year’s crop was corn. Each plot was 30 ft long and contained two rows spaced 30-in. apart. Alleys were cut between plots reducing plot length to 28 ft. All plots were irrigated with an overhead sprinkler center pivot irrigation system. . . . There were no significant differences …

Major Fusarium Diseases On Corn, Wheat, And Soybeans In Nebraska, Bo Liu, Loren J. Giesler, Tamra A. Jackson-Ziems, Stephen N. Wegulo, Robert M. Harveson

Department of Plant Pathology: Faculty Publications

Fusarium species have been associated with many important diseases of corn, wheat, and soybean, causing significant yield loss in Nebraska; some produce mycotoxins that are harmful to both human and animal consumers. These pathogens are very common in agricultural field soil across the Midwest and cause numerous types of diseases.

Corn Disease Update, Tamra A. Jackson-Ziems, Craig B. Langemeier, Greg R. Kruger

Department of Plant Pathology: Faculty Publications

Goss's Bacterial Wilt and Blight ... Symptoms ... 2011 Survey results ... New alternate hosts identified ... Goss's Wilt Management Strategies ... More Resources ... Literature Cited

Aspergillus Ear Rot and Aflatoxin Contaminated Grain ... Table 1. FDA Action Levels for Aflatoxin in Feed and Food ... Testing for Aflatoxin ... High risk factors for aflatoxin contamination in corn ... Scouting for Aspergillus Ear Rot ... Harvest and Storage ... More Resources

Stalk Rot Diseases ... Scouting for Stalk Rot Diseases ... Management ... More Resources

Immunodetection Of Triticum Mosaic Virus By Das- And Dac-Elisa Using Antibodies Produced Against Coat Protein Expressed In Escherichia Coli: Potential For High-Throughput Diagnostic Methods, Satyanarayana Tatineni, Gautam Sarath, Dallas Seifers, Roy C. French

Department of Agronomy and Horticulture: Faculty Publications

Triticum mosaic virus (TriMV), an economically important virus infecting wheat in the Great Plains region of the USA, is the type species of the Poacevirus genus in the family Potyviridae. Sensitive and high-throughput serology-based detection methods are crucial for the management of TriMV and germplasm screening in wheat breeding programs. In this study, TriMV coat protein (CP) was expressed in Escherichia coli, and polyclonal antibodies were generated against purified soluble native form recombinant CP (rCP) in rabbits. Specificity and sensitivity of resulting antibodies were tested in Western immuno-blot and enzyme-linked immunosorbent assays (ELISA). In direct antigen coating (DAC)-ELISA, …

Soil Sorptivity Enhancement With Crop Residue Accumulation In Semiarid Dryland No-Till Agroecosystems, T.M. Shaver, G. A. Peterson, Laj R. Ahuja, D.G. Westfall

Department of Agronomy and Horticulture: Faculty Publications

Water capture and precipitation use efficiency are of great importance in dryland cropping systems because the world's dependence on food produced in dryland areas continues to increase. Growing season evapotranspiration potential greatly exceeds growing season precipitation rates in dryland areas, creating a water deficit for crops. Management practices that positively impact soil physical properties increase the potential for soils to capture water. One way to assess the ability of soils to capture water is through the measurement of sorptivity. Sorptivity is defined as the cumulative infiltration proportionality constant and is governed by surface soil physical properties such as texture, degree …

Enzyme Activity In Wheat Breeding Lines Derived From Matings Of Low Polyphenol Oxidase Parents, Somrudee Nilthong, Robert A. Graybosch, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Polyphenol oxidase (PPO) in grain plays a major role in time-dependent discoloration of wheat (Triticum aestivum L.) products, especially fresh noodles. Breeding wheat cultivars with low or nil PPO activity can reduce undesirable product darkening. The low PPO line PI 117635 was crossed to two low PPO wheats, IDO580 and ‘IDO377s’, to determine whether matings between wheats with low levels of grain PPO would result in complementation, such that lines with still lower or nil PPO would be generated. Progeny in a population derived from PI 117635/ IDO580 displayed no variation in PPO activity. In the F_3:4 populations …

Evaluation Of Public Sweet Sorghum A-Lines For Use In Hybrid Production, Jeffrey F. Pedersen, Scott E. Sattler, William F. Anderson

Department of Agronomy and Horticulture: Faculty Publications

A fundamental need for commercialization of sweet sorghum [Sorghum bicolor (L.) Moench] as a bioenergy crop is an adequate seed supply, which will require development of hybrid varieties using dwarf seed-parent lines. A set of six public sweet sorghum A-lines (Dwarf Kansas Sourless, KS9, N36, N38, N39, and N4692) were crossed with a set of six public sweet sorghum cultivars (Brawley, Kansas Collier, Dale, Sugar Drip, Waconia, and Wray). Grain, fiber, and sugar yields were determined, and conversion formulas were applied to estimate ethanol yields. Hybrids were grown in fields at Ithaca, NE, USA, in 1983– 1984 fertilized with …

Functional Characterization Of Cinnamyl Alcohol Dehydrogenase And Caffeic Acid O-Methyltransferase In Brachypodium Distachyon, Gina M. Trabucco, Dominick A. Matos, Scott J. Lee, Aaron J. Saathoff, Henry D. Priest, Todd C. Mockler, Gautam Sarath, Samuel P. Hazen

Department of Agronomy and Horticulture: Faculty Publications

Background: Lignin is a significant barrier in the conversion of plant biomass to bioethanol. Cinnamyl alcohol dehydrogenase (CAD) and caffeic acid O-methyltransferase (COMT) catalyze key steps in the pathway of lignin monomer biosynthesis. Brown midrib mutants in Zea mays and Sorghum bicolor with impaired CAD or COMT activity have attracted considerable agronomic interest for their altered lignin composition and improved digestibility. Here, we identified and functionally characterized candidate genes encoding CAD and COMT enzymes in the grass model species Brachypodium distachyon with the aim of improving crops for efficient biofuel production.

Results: We developed transgenic plants overexpressing artificial microRNA designed …

Transcriptome Analysis Of Two Buffalograss Cultivars, Michael Wachholtz, Tiffany Heng-Moss, Paul Twigg, Lisa Baird, Guoqing Lu, Keenan Amundsen

Department of Agronomy and Horticulture: Faculty Publications

Background: Buffalograss [Buchloë dactyloides (Nutt.) Engel. syn. Bouteloua dactyloides (Nutt.) Columbus] is a United States native turfgrass species that requires less irrigation, fungicides and pesticides compared to more commonly used turfgrass species. In areas where water is limited, interest in this grass species for lawns is increasing. While several buffalograss cultivars have been developed through buffalograss breeding, the timeframe for new cultivar development is long and is limited by a lack of useful genetic resources. Two high throughput next-generation sequencing techniques were used to increase the genomic resources available for buffalograss.

Results: Total RNA was extracted and …

Complete Plastid Genomes From Ophioglossum Californicum, Psilotum Nudum, And Equisetum Hyemale Reveal An Ancestral Land Plant Genome Structure And Resolve The Position Of Equisetales Among Monilophytes, Felix Grewe, Wenhu Guo, Emily A. Gubbels, A Katie Hansen, Jeffrey P. Mower

Department of Agronomy and Horticulture: Faculty Publications

Background: Plastid genome structure and content is remarkably conserved in land plants. This widespread conservation has facilitated taxon-rich phylogenetic analyses that have resolved organismal relationships among many land plant groups. However, the relationships among major fern lineages, especially the placement of Equisetales, remain enigmatic.

Results: In order to understand the evolution of plastid genomes and to establish phylogenetic relationships among ferns, we sequenced the plastid genomes from three early diverging species: Equisetum hyemale (Equisetales), Ophioglossum californicum (Ophioglossales), and Psilotum nudum (Psilotales). A comparison of fern plastid genomes showed that some lineages have retained inverted repeat (IR) boundaries originating …