Digital Commons Network^™

Precision Delivery Using Nanopipette For Single-Cell Studies, He Zhang, Maksudur Rahman, Yang Tao, Joseph W Sampson, Hang Ren

Journal of Electrochemistry

Nanopipette based scanning probe technique is a versatile tool in non-contact imaging in biology. In addition to the topographic imaging, its capability of localized delivery of bio-active molecules is emerging. In this mini review, we introduce the applications of nanopipette in single-cell researches with a focus on localized delivery. The working principles of three delivery modes including resistive pulse, pressure-driven flow, and electroosmotic flow-driven delivery are summarized and compared. Their applications in single-cell researches are reviewed. The current technical challenges in scanning ion conductance microscopy-based delivery, and their growing influence in medicine and pharmacologic researches are also discussed.

Enhancing Muscle Health And Modulating Immune Response With Galectin-1 In Lgmd2b/R2 Models, Stefannia Esparza Pulido

Theses and Dissertations

Limb-Girdle Muscular Dystrophy Type 2B/R2 (LGMD2B/R2) is a type of dysferlinopathy, a progressive muscle-wasting disorder caused by mutations in the dysferlin gene. Hallmarks of the disease include chronic inflammation, impaired muscle regeneration, and eventual muscle degeneration. Currently, no FDA-approved therapies are available for dysferlinopathies. Recombinant human Galectin-1 (rHsGal-1) has shown multiple roles in maintaining skeletal muscle homeostasis, promoting muscle repair, enhancing myogenesis, and modulating inflammation by downregulating the NF-κB pathway. The ability of rHsGal-1 to modulate the immune response is particularly promising for therapeutic applications in patients with LGMD2B/R2. In this study, we evaluated the effects of rHsGal-1 in a …

Pediatric Renal Cell Carcinoma (Prcc) Subpopulation Environmental Differentials In Survival Disadvantage Of Black/African American Children In The United States: Large-Cohort Evidence, Laurens Holmes, Phatismo Masire, Arieanna Eaton, Robert Mason, Mackenzie Holmes, Justin William, Maura Poleon, Michael Enwere

College of Population Health Faculty Papers

OBJECTIVE: Renal cell carcinoma (RCC) is a rare but severe and aggressive pediatric malignancy. While incidence is uncommon, survival is relatively low with respect to acute lymphocytic leukemia (ALL), AML, lymphoma, ependymoma, glioblastoma, and Wilms Tumor. The pediatric renal cell carcinoma (pRCC) incidence, cumulative incidence (period prevalence), and mortality vary by health disparities' indicators, namely sex, race, ethnicity, age at tumor diagnosis, and social determinants of health (SDHs) as well as Epigenomic Determinants of Health (EDHs). However, studies are unavailable on some pRCC risk determinants, such as area of residence and socio-economic status (SES). The current study aimed at assessing …

Spatial Pattern And Differential Expression Analysis With Spatial Transcriptomic Data, Fei Qin, Xizhi Luo, Bo Cai Ph.D., Feifei Xiao, Guoshuai Cai

Faculty Publications

The emergence of spatial transcriptomic technologies has opened new avenues for investigating gene activities while preserving the spatial context of tissues. Utilizing data generated by such technologies, the identification of spatially variable (SV) genes is an essential step in exploring tissue landscapes and biological processes. Particularly in typical experimental designs, such as case-control or longitudinal studies, identifying SV genes between groups is crucial for discovering significant biomarkers or developing targeted therapies for diseases. However, current methods available for analyzing spatial transcriptomic data are still in their infancy, and none of the existing methods are capable of identifying SV genes between …

A B-Polynomial Approach To Approximate Solutions Of Pdes With Multiple Initial Conditions, Muhammad I. Bhatti, Md. Habibur Rahman

Physics & Astronomy Faculty Publications

In this article, we present a novel B-Polynomial Approach for approximating solutions to partial differential equations (PDEs), addressing the multiple initial conditions. Our method stands out by utilizing two-dimensional Bernstein polynomials (B-polynomials) in conjunction with their operational matrices to effectively manage the complexity associated with PDEs. This approach not only enhances the accuracy of solutions but also provides a structured framework for tackling various boundary conditions. The PDE is transformed into a system of algebraic equations, which are then solved to approximate the PDE solution. The process is divided into two main steps: First, the PDE is integrated to incorporate …

Understanding Mechanisms For Coastal Marsh Sustainability In A Changing Climate, Ashley R. Booth

LSU Doctoral Dissertations

In the Chenier Plain of Louisiana and Texas, coastal marshes are subject to high rates of relative sea level rise (RSLR), restricted sedimentation, and declining elevation attributed to subsidence and decades of intensive management. These marshes were created via mineral sedimentation but now largely accrete via organic matter accumulation. This organic matter accumulation (OMA) – or the balance between plant productivity and decomposition – is essential for maintaining elevation and thus long-term sustainability. However, management for elevation is complicated by a poor understanding of how abiotic factors like flooding and salinity impact processes driving OMA and elevation. To better understand …

Bioconvection Dynamics In Rotating And Stationary Cone-Disk Systems, Puneet Rana, Mahanthesh Basavarajappa

School of Mathematical & Statistical Sciences Faculty Publications

This work focuses on the study of bioconvection in a conical region of rotating and stationary cone-disk systems utilizing nanofluids involving gyrotactic micro-organisms. The flow geometry encompasses two different configurations, namely, rotating cone-disk system (RCDS) and stationary cone-disk system (SCDS). For RCDS, four unique configurations are considered: rotating cone static disk (Model-I), static cone rotating disk (Model-II), co-rotating cone-disk (Model-III), and counter-rotating cone-disk (Model-IV), while SCDS includes both swirling and non-swirling flow scenarios. A total of six different physical configurations that differ in boundary conditions are investigated. The mathematical model comprises Navier–Stokes, energy, nanoparticle volume fraction (NVF), and micro-organism density …

Heroic Virtues In Space Exploration: Everydayness And Supererogation On Earth And Beyond, John N. Nielsen

Heroism Science

The space environment poses significant dangers and difficulties for human explorers—difficulties so great that it has been argued that space exploration should be exclusively conducted by automated spacecraft. The possibility of space science conducted by human astronauts in spite of these dangers presents the opportunity for individuals to exhibit traditional heroic virtues—presumably, supererogatory forms of prudence, temperance, fortitude, and justice—in the pursuit of science. In particular, the difficulties of pursuing science in the hostile conditions of extraterrestrial environments will call for physical courage in the face of personal danger, patience with the painstaking procedures of technically difficult scientific experiments performed …

Decomposition Rates Of Native (Indigo) Vs Non-Native (Cosmos) Plants, Siobhan Day, Emily L. Garner, Carmyn Harrison, Corinne Parker, Angela D. Panvini

Science University Research Symposium (SURS)

Decomposition is a crucial step in the cycling and recycling of nutrients in the natural world. As things die, detritivores such as bacteria, protists, and fungi break down the material into organic and inorganic matter, releasing nutrients into the soil to be used by living plants. This study aimed to determine the rate of decomposition of a native plant, Baptisia australis, (Blue False Indigo) compared to a non-native plant, Cosmossulphureus (Cosmos). Eight litterbags filled with Indigo and eight litterbags filled with Cosmos were left to decompose and the rate of decomposition was recorded over a period of eight weeks. Results …

Decomposition Rates Of Introduced C. Sulphureus Vs. Native A. Rhomboidei ​, Jonathan R. Loftis, Todd Hoskinson, Gabi Palumbo, Marven Roufail, Darlene Panvini

Science University Research Symposium (SURS)

Decomposition rates are important in measuring the health of an ecosystem. They can indicate the rate at which nutrients cycle through the habitat. However, not all leaves will decompose at the same rate, which impacts the rate at which nutrients can be recycled. The introduction of non-native species may bring about changes to the native nutrient cycle, as these plants may have a different rate of decomposition than those of native species. This can affect the amount of nutrients available in the soil surrounding native and non-native plant species, which in turn affect other native species. Using two species of …

Propagation Party: Comparing Root Development Across Techniques, Sumiah Muhsin, Aunalise Terreri, Edi Mihalcea, Indy Cockrill

Science University Research Symposium (SURS)

Plant propagation is a method of growing plants through various techniques that create genetically identical clones of the parent plant. Propagation maintains the preferred genetic material of a plant so that it can be further reproduced on a larger scale. To assess growth variations, sweet potato cuttings were propagated in soil and water, as well as in water with and without rooting hormone. Additionally, Monstera cuttings were propagated in water with and without rocks. Root development was observed across all conditions to determine the most effective propagation methods. Plants propagated in water appear to root more successfully than those propagated …

A New Dxccdita Based Meminductor Emulator And Its Application In Chaotic Oscillator, Bhawna Aggarwal, Shireesh Kumar Rai, Harsh Jain

Turkish Journal of Electrical Engineering and Computer Sciences

This work introduces a new dual-X current conveyor differential input transconductance amplifier (DXCCDITA) based meminductor emulator, alongside its application in chaotic oscillator has also been presented. To realize the designed meminductor emulator, one DXCCDITA, two resistors, and two capacitors are employed. Pinched hysteresis loops are achieved across a wide frequency range spanning from 100 Hz to 1.5 MHz, encompassing both decremental and incremental topologies. Additionally, the proposed circuit offers the flexibility to switch between incremental and decremental configurations using a simple switch. Through examination of non-volatility and transient responses, the efficiency of the presented emulator is evidently demonstrated. To further …

Lgformer: Informer-Based Personalized Modeling For Blood Glucose Prediction, Xue Yuewei, Shaopeng Guan, Jia Wanhai

Turkish Journal of Electrical Engineering and Computer Sciences

Effective diabetes management relies on precise prediction of blood glucose levels to minimize complications. However, the patterns and fluctuations in blood glucose vary significantly among patients, posing a challenge for existing prediction methods. Many current approaches fail to accommodate these individual differences, leading to less reliable predictions. In response to this challenge, we present LGformer, a novel prediction model based on the Informer architecture, designed to enhance both flexibility and accuracy. LGformer improves upon Informer by integrating LSTM and GRU layers into its probSparse Self-attention mechanism, allowing for personalized processing of blood glucose data tailored to each patient's unique profile. …

3d Reconstruction And Comparative Anatomical And Kinematic Analyses Of The Foot Of Archaeopteryx, Alexander M. Kirk

USF Tampa Graduate Theses and Dissertations

Research on the evolution of dinosaur flight has long been dominated by the wing, often overlooking the foot. The foot of Archaeopteryx, the “icon of evolution”, thus offers a unique opportunity to investigate this critical evolutionary stage. Chapter I of this dissertation integrates advanced 3D reconstruction techniques, combining photogrammetry with X-ray data, to create a high-resolution model of the foot of the Thermopolis specimen of Archaeopteryx for visualization and analysis. Driven by 3D coordinate axes derived from joint surface topology, the analyses in Chapter II reveal terrestrial adaptations -- such as a medially oriented hallux (81°), serially shorter phalanges on …

Study On The Seasonal Endobacterial Profile Of Avicennia Officinalis, Focusing On Core Bacterial Consortia Within Mangrove Pneumatophores, Devi R R, Vinod Prabhakar

Karbala International Journal of Modern Science

Microhabitats are smaller pockets of ecosystems with unique conditions and they serve as major contributors of species richness. Mangrove plants offer a diverse array of such microhabitats (rhizosphere, phyllosphere, endosphereetc), and the inhabitant bacteria benefit the host by providing better salinity tolerance, faster and better nutrient mobilization, protection from phytopathogens and assistance in seed germination. Identification of such beneficial bacteria,their growth requirementsandmetabolism, willhave direct application in the field of agriculture and ecosystem restoration. Hence in this study, effort has been made to elucidate the seasonal numerical and compositional profile of pneumatophore bacterial consortia of Avicennia officinalis, from the mangrove …

Conformational Flexibility Of The C-Terminal Region Influences Distal Active Site Residues Across The Tautomerase Superfamily, Christopher Argueta, Andrew Parkins, Georgios Pantouris

Pacific Faculty Work

Consisting of more than 11,000 members distributed over five families, the tautomerase superfamily (TSF) is a large collection of proteins with diverse biological functions. While much attention has been given to individual TSF enzymes, a majority remain structurally and functionally uncharacterized. Given its large size, studying a representative member of each family offers a viable approach for extracting mechanistic insights applicable to the entire superfamily. In this study, cis-3-chloroacrylic acid dehalogenase (cis-CaaD), 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI), malonate semialdehyde decarboxylase (MSAD), and 4-oxalocrotonate tautomerase (4-OT) were referenced against the well-studied macrophage migration inhibitory factor (MIF) and D-dopachrome tautomerase (D-DT) using triplicate 1 …

Characterizing West Florida Shelf Reef Fish Communities Using A Scientific Echosounder, Edmund A. Hughes

USF Tampa Graduate Theses and Dissertations

The advancement and application of non-invasive fisheries survey technologies, such as the scientific echosounder, have significantly enhanced our understanding of fish populations and their habitats, more recently in regions where traditional sampling methods are limited, such as complex reef habitats. This research, conducted as part of the Continental Shelf Characterization, Assessment, and Mapping Project (C-SCAMP) on the West Florida Shelf, leverages acoustic and visual technologies to investigate the distribution of fish densities, fish target strength and length relationships, and the relationship between seafloor topography and fish biomass distribution.

The first study compared reef fish densities estimated from near-concurrent acoustic (Simrad …

Acoustic Energy For Use In Mass Spectrometry, Ashton N. Taylor

USF Tampa Graduate Theses and Dissertations

Analyzing lipid assemblies, including synthetically produced liposomes and naturally produced extracellular vesicles (EVs), is challenging due to their size, diverse composition, and tendency to aggregate. EVs contain a complex variety of lipids, proteins, and other metabolites. EVs composition can provide us insight into what is happening inside the body and a subcellular level and have potential for noninvasive biomarkers. Liposomes are vesicles that form with a simple phospholipid bilayer membrane and play important roles in drug delivery systems. The use of mass spectrometry (MS) allows for broad analysis of lipids from different classes but their release from the higher order …

Investigating Factors Influencing Science Student Retention, Hayley Benson, Morgan Balabanoff

The Cardinal Edge

Retention in and across STEM degrees has been a significant problem across institutions. By the time students have reached their third year, the University of Louisville has lost over 50% of the students who entered as first-year students.

The main objective of this study is to investigate variables such as sense of belonging, student’s mindset, and science identity and their relationship with retention in STEM degrees. While many studies have identified gaps among student groups across these variables, few studies have generated solutions to address these gaps. Further, the proposed solutions are often from the viewpoint of researchers and upper …

The Impact Of Cumulative And Acute Loading On Achilles Tendon Health, Performance, And Reported Pain In Collegiate Gymnasts, Julio Serrano Samayoa

Electronic Theses and Dissertations

Gymnasts are at a high risk of Achilles tendon (AT) injuries due to intense loads during takeoffs and landings. To better understand better the relationship between impact loading and its effects on tendon adaptation and athletic performance, this study uses Inertial Measurement Units (IMUs) to track AT loading across a collegiate gymnastics season. This data were compared against physiological and athletic performance metrics, obtained through force plates and ultrasound imaging, to explore how mechanical load influences reported pain and athletic performance. Results varied, with cumulative impacts being correlated with improved jump height (Spearman 0.362, Pearson 0.348), while peak power and …

Investigating The Role Of Tetherin Protein In Multivesicular Bodies Fusions In Lung Cancer Cells, Md. Rakib Miah

Electronic Theses and Dissertations

Cells rely on the secretion of exosomes to communicate with one another and this process is potentially mediated by a protein called tetherin, which anchors exosomes to the cell surface to limit their spread. Tetherin protein has attracted a lot of attention because of its capacity to hinder the propagation of viruses by attaching virions to the surface of host cells. Treatment with interferon-alpha (IFNα) increases the production of tetherin, although it is not known how this affects tetherin localization and exosome-mediated communication. This thesis looks at how the expression of tetherin, which IFNα boosts, affects the dynamics of intercellular …

Potential Cell Preservation In Mars-Relevant Clay Minerals, Hanford Gerille Gonzales, Leena M. Cycil, Elisabeth Hausrath

Undergraduate Research Symposium Posters

This study investigates the potential of Fe-nontronite, a clay mineral found on Mars, to preserve biological cells and retain biosignatures such as trace metals. The research explores the preservation potential of nontronite by reacting it with cells under the following conditions: 1) reacting cells with nontronite precursors at low temperature and 2) reacting cells with the already synthesized nontronite made at high temperature. Microbial species Shewanella oneidensis and Geobacter metallireducens, known for their relevance to iron-rich environments, were introduced in intact and lysed forms to assess their interactions with each condition of nontronite. Preliminary results from scanning electron microscopy (SEM) …

Chemical And Structural Design Of Single Molecule Switches, Elaina Grogg

Longwood Senior Thesis Proposal

No abstract provided.

Impact Of Young Biocrust On Dryland Surface Albedo, Rhynhardt Mudde, Rebekah Magness, Raul Roman, Nicole Pietrasiak

Undergraduate Research Symposium Posters

More than 40% of the Earth’s surface is covered by drylands. Due to limited availability of water, less surface area is covered by vascular plants. Instead, this space is occupied by microbial communities that exist in close contact with mineral soil, creating a living aggregate on the upper soil layer and are known collectively as biological soil crusts or “biocrusts”. Biocrusts play a vital role in ecosystem functioning in drylands specifically through their influence on hydrological processes (e.g., water retention, infiltration). However, the impact of biocrusts on evaporation is not well understood. Biocrusts have been reported to either increase or …

Assessing Ectomycorrhizal Advantage On Tree Species Within Differing Soil Materials In Spring Mountains, Nevada, Kirsten Soriano, Riley Jones, Daniel Thompson

Undergraduate Research Symposium Posters

Ectomycorrhizal fungi (ECM) form symbiotic relationships with their partner plant, creating root systems which allow for the exchange of nutrients among connected plants. The Spring Mountains National Recreation Area (NRA) in Southern Nevada is the study site for examining ECMs due to its diverse ecosystem with numerous inhabiting species. To assess the effects of ECMs on the tree composition, literature review was conducted to outline previous methods. Through data analysis and observations of the sample sites, it is concluded that ECMs are highly likely to have an effect on tree composition of the Spring Mountains NRA. The purpose of this …

Effects Of Fire Temperatures On Mojave Desert Native And Nonnative Seeds, Sophia Lorenzana, Lindsay Chiquoine

Undergraduate Research Symposium Posters

Large-scale wildfires have been historically rare in hot deserts like the Mojave, largely due to the scarcity or uneven distribution of native plant biomass as fuel. Thus, native plants in these regions are ill-adapted to withstand spreading wildfire, resulting in slow post-fire recovery. Here, I test the hypothesis that nonnative grasses respond better to heat cues than native plant species. Seeds from 3 invasive and 13 native plant species were collected from research sites located in the eastern Mojave Desert, near surrounding Clark County Flood Control District weather stations. Seeds were buried in an artificial substrate mimicking field soil conditions …

Characterizing The Mechanical And Visoelastic Properties Of Sodium Alginate, Vesper Evereux

Undergraduate Research Symposium Posters

A crucial part of tissue engineering lies in understanding and characterizing the mechanical and viscoelastic properties of various types of biomaterials. Understanding these properties allows better biomaterials to be produced with characteristics more similar to those of the human body and with better biocompatability. In this study, sodium alginate was chemically crosslinked with calcium chloride and subsequently tested for it's instantaneous Elastic Modulus, instantaneous Shear Modulus, and equivalent viscosity using indentation testing methods consisting of a stress-relaxation test and nonlinear curve-fitting analysis. Two and three millimeter indentation tests were performed using a low-cost and portable device built in-lab that resulted …

Detection Of Methane Leaks By The Use Of Mid-Range Infrared Camera, Jared Rosario, Oscar Salcido

Undergraduate Research Symposium Posters

Timely detection of methane leaks from natural gas infrastructure, like pipelines and valves, is essential for mitigating environmental and safety risks. This research focuses on using mid-wave infrared (MwIR) cameras on unmanned aerial systems (UAS) to detect leaks. By leveraging machine learning, the study aims to develop an efficient, real-time methane inspection system that operates directly on embedded processors on UAS platforms.

This project employs the FLIR G300a OGI camera for remote gas inspection, utilizing video preprocessing and optical flow to mask gas plumes in footage. The YOLOv8 deep learning model is used to detect gas pixels and segment the …

Efficacy Of Banana Fibre Paper For The Management Of The Root-Knot Nematode, Meloidogyne Incognita, On Potato (Solanum Tuberosum) In Kenya, Dorris W. Kamau, Wanjohi Waceke, Laura Cortada, Onesmus Mwaura, Tahira Pirzada, Tim L. Sit, Eric Davis, Dick Guenther, Reny Mathew, Lokendra Pal, Saad Khan, Solveig Haukeland, James Kisaakye, Charles Opperman, Danny Coyne

All Peer-Reviewed Publications

Globally, potato (Solanum tuberosum) is a key staple food crop. In Kenya, it is the second most important food crop after maize. Among the various constraints to potato production are plant-parasitic nematodes. In particular, root-knot nematodes (Meloidogyne spp.) are a significant impediment to potato production, suppressing yield and reducing the quality of harvested tubers. The current study was undertaken to evaluate the efficacy of a lignocellulose fibre matrix (banana paper) either impregnated with a chemical or drenched with a biologically-based nematicide for the management of root-knot nematodes on potatoes, in Kenya. The experiment was conducted in both field and pot …

Holistic Correlation Measure For Enhanced Encapsulation Of Trait Heterogeneity And Discovery Of Co-Expression, Zachary Valleroy

Theses

Large-scale, high-dimensional data analyses can be computationally prohibitive due to combinatorial explosion of the search space for finding complex patterns; a viable alternative is network modeling for abstraction and quantifying intrinsic data associations. Prominent network analysis methods furnish frameworks for model synthesis and validation but rely on standard correlation measures impaired by semi-supervised biases, latent heterogeneity, and uneven discretization techniques. Here we investigate a holistic measure for encapsulating data heterogeneity for enhanced efficacy of revealing complex patterns through network analysis. Our unique correlation metric, K-medoids Utility for Duo Original Similarities (Kudos), exhaustively factors real-valued analyte data to compute …