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Bats Increased Foraging Activity At Experimental Prey Patches Near Hibernacula, Winifred F. Frick, Yvonne A. Dzal, Kristin A. Jonasson, Michael D. Whitby, Amanda M. Adams, Christen Long, John E. Depue, Christian M. Newman, Craig K. R. Willis, Tina L. Cheng

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

1. Emerging infectious diseases in wildlife can threaten vulnerable host populations. Actions targeting habitat improvements to aid population resilience and recovery may be beneficial long-term strategies, yet testing the efficacy of such strategies before major conservation investments are made can be challenging.

2. The disease white-nose syndrome (WNS) has caused severe declines in several species of North American hibernating bats. We tested a novel conservation approach targeted at improving foraging conditions near bat hibernacula by experimentally manipulating insect density in the pre-hibernation fattening period and spring emergence recovery period. We measured foraging (feeding buzzes) and echolocation activity of little brown bats Myotis …

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Animal Welfare - Environment - Sustainable Development Nexus: Scoping Study, Janice H. Cox

Nexus – UNEP – Animal Welfare, Environment, Sustainable Development

A detailed report on the links between animal welfare, environmental health and global sustainability. Issues discussed include climate change, biodiversity, pollution and waste management, one health, sustainable development and just transitions.

From The Organismal To Biosphere Levels: Environmental Impacts On The Amphibian Microbiota, Obed Hernandez-Gomez, Jessica Hua

Natural Sciences and Mathematics | Faculty Scholarship

This review summarizes the role of environmental factors on amphibian microbiotas at the organismal, population, community, ecosystem, and biosphere levels. At the organismal-level, tissue source, disease status, and experimental manipulations were the strongest predictors of variation in amphibian microbiotas. At the population-level, habitat quality, disease status, and ancestry were commonly documented as drivers of microbiota turnover. At the community-level, studies focused on how species’ niche influence microbiota structure and function. At the ecosystem-level, abiotic and biotic reservoirs were important contributors to microbiota structure. At the biosphere-level, databases, sample banks, and semi-natural experiments were commonly used to describe microbiota assembly mechanisms …

An Evaluation Of Avian Influenza Virus Whole-Genome Sequencing Approaches Using Nanopore Technology, Hon S. Ip, Sarah Uhm, Mary Lea Killian, Mia K. Torchetti

United States Department of Agriculture Wildlife Services: Staff Publications

As exemplified by the global response to the SARS-CoV-2 pandemic, whole-genome sequencing played an important role in monitoring the evolution of novel viral variants and provided guidance on potential antiviral treatments. The recent rapid and extensive introduction and spread of highly pathogenic avian influenza virus in Europe, North America, and elsewhere raises the need for similarly rapid sequencing to aid in appropriate response and mitigation activities. To facilitate this objective, we investigate a next-generation sequencing platform that uses a portable nanopore sequencing device to generate and present data in real time. This platform offers the potential to extend in-house sequencing …

Alphaviruses Detected In Mosquitoes In The North-Eastern Regions Of South Africa, 2014 To 2018, Milehna M Guarido, Isabel Fourie, Kgothatso Meno, Adriano Mendes, Megan A Riddin, Caitlin Macintyre, Sontaga Manyana, Todd Johnson, Maarten Schrama, Erin E Gorsich, Basil D Brooke, Antonio Paulo G Almeida, Marietjie Venter

Faculty, Staff and Student Publications

The prevalence and distribution of African alphaviruses such as chikungunya have increased in recent years. Therefore, a better understanding of the local distribution of alphaviruses in vectors across the African continent is important. Here, entomological surveillance was performed from 2014 to 2018 at selected sites in north-eastern parts of South Africa where alphaviruses have been identified during outbreaks in humans and animals in the past. Mosquitoes were collected using a net, CDC-light, and BG-traps. An alphavirus genus-specific nested RT-PCR was used for screening, and positive pools were confirmed by sequencing and phylogenetic analysis. We collected 64,603 mosquitoes from 11 genera, …

Intelligent Health Care And Diseases Management System: Multi-Day-Ahead Predictions Of Covid-19, Ahed Abugabah, Farah Shahid

All Works

The rapidly growing number of COVID-19 infected and death cases has had a catastrophic worldwide impact. As a case study, the total number of death cases in Algeria is over two thousand people (increased with time), which drives us to search its possible trend for early warning and control. In this paper, the proposed model for making a time-series forecast for daily and total infected cases, death cases, and recovered cases for the countrywide Algeria COVID-19 dataset is a two-layer dropout gated recurrent unit (TDGRU). Four performance parameters were used to assess the model’s performance: mean absolute error (MAE), root …

Engineering A Microbiosphere To Clean Up The Ocean – Inspiration From The Plastisphere, Khulood A. Alnahdi, Laila W. Alali, Mezna K. Suwaidan, M. Kalim Akhtar

All Works

Plastic is a ubiquitous material that has become an essential part of our lives. More than one hundred million tons of plastic has accumulated in the world’s oceans as a result of poor waste management. This plastic waste gradually fragments into smaller pieces known as microplastics and nanoplastics. These small plastic particles can cause significant damage to marine ecosystems, and negatively impact human health. According to a recent review of international patents, the majority of ocean-cleaning inventions are limited to microplastics larger than 20 μm. Furthermore, such technologies are ineffective for nanoplastics, which measure less than 1000 nm, or even …

Deep Feature Meta-Learners Ensemble Models For Covid-19 Ct Scan Classification, Jibin B. Thomas, K. V. Shihabudheen, Sheik Mohammed Sulthan, Adel Al-Jumaily

Research outputs 2022 to 2026

The infectious nature of the COVID-19 virus demands rapid detection to quarantine the infected to isolate the spread or provide the necessary treatment if required. Analysis of COVID-19-infected chest Computed Tomography Scans (CT scans) have been shown to be successful in detecting the disease, making them essential in radiology assessment and screening of infected patients. Single-model Deep CNN models have been used to extract complex information pertaining to the CT scan images, allowing for in-depth analysis and thereby aiding in the diagnosis of the infection by automatically classifying the chest CT scan images as infected or non-infected. The feature maps …

Adsorption Of Antibiotics In Wastewater By Stevia Rebaudiana Zinc Oxide Nanoparticles, Hania Guirguis

Theses and Dissertations

Green zinc oxide nanoparticles (ZnO NPs), synthesized using Stevia rebaudiana extract, are investigated as novel adsorbents for the removal of the antibiotics ciprofloxacin (CIP) and tetracycline (TET) from water. The green ZnO NPs were synthesized using a novel, rapid and ecofriendly technique that utilized a natural source with high sugar content as a reducing agent and a less energy intensive approach that did not require annealing or calcination at high temperatures. The particles are mesoporous, with a hexagonal wurtzite structure, a BET surface area of 15.28 m2/g and a size range of 37.36-71.33 nm. At pH 5, the green ZnO …

Working Within Constraints: Managing African Savannas For Animal Production And Biodiversity, J. T. Du Toit

IGC Proceedings (1977-2023)

The mean density of livestock biomass on African rangelands now greatly exceeds that of indigenous large herbivores, although livestock cannot fully substitute for wildlife with respect to co-evolved ecosystem processes involving herbivory. The dominance of livestock in semi-arid rangelands is largely due to water provision, which uncouples livestock population dynamics from the rainfall-driven trajectories followed by indigenous ungulate species in wildlife areas. Ecological sustainability cannot be achieved with a few exotic species maintained at unprecedented biomass densities in savanna ecosystems, which are evolutionarily adapted for species-rich communities of ungulates of a wise range of sizes. Integrating wildlife and livestock in …

Integrated Mrna Sequence Optimization Using Deep Learning, Haoran Gong, Jianguo Wen, Ruihan Luo, Yuzhou Feng, Jingjing Guo, Hongguang Fu, Xiaobo Zhou

Faculty, Staff and Student Publications

The coronavirus disease of 2019 pandemic has catalyzed the rapid development of mRNA vaccines, whereas, how to optimize the mRNA sequence of exogenous gene such as severe acute respiratory syndrome coronavirus 2 spike to fit human cells remains a critical challenge. A new algorithm, iDRO (integrated deep-learning-based mRNA optimization), is developed to optimize multiple components of mRNA sequences based on given amino acid sequences of target protein. Considering the biological constraints, we divided iDRO into two steps: open reading frame (ORF) optimization and 5' untranslated region (UTR) and 3'UTR generation. In ORF optimization, BiLSTM-CRF (bidirectional long-short-term memory with conditional random …

Modeling And Analyzing Homogeneous Tumor Growth Under Virotherapy, Chayu Yang, Jin Wang

Department of Mathematics: Faculty Publications

We present a mathematical model based on ordinary differential equations to investigate the spatially homogeneous state of tumor growth under virotherapy. The model emphasizes the interaction among the tumor cells, the oncolytic viruses, and the host immune system that generates both innate and adaptive immune responses. We conduct a rigorous equilibrium analysis and derive threshold conditions that determine the growth or decay of the tumor under various scenarios. Numerical simulation results verify our analytical predictions and provide additional insight into the tumor growth dynamics.

Not A Waste: Wastewater Surveillance To Enhance Public Health, Anna Gitter, Jeremiah Oghuan, Anuja Rajendra Godbole, Carlos A. Chavarria, Carlos Monserrat, Tao Hu, Yun Wang, Anthony W. Maresso, Blake M. Hanson, Kristina D. Mena, Fuqing Wu

Pharmacy Faculty Articles and Research

Domestic wastewater, when collected and evaluated appropriately, can provide valuable health-related information for a community. As a relatively unbiased and non-invasive approach, wastewater surveillance may complement current practices towards mitigating risks and protecting population health. Spurred by the COVID-19 pandemic, wastewater programs are now widely implemented to monitor viral infection trends in sewersheds and inform public health decision-making. This review summarizes recent developments in wastewater-based epidemiology for detecting and monitoring communicable infectious diseases, dissemination of antimicrobial resistance, and illicit drug consumption. Wastewater surveillance, a quickly advancing Frontier in environmental science, is becoming a new tool to enhance public health, improve …

The Future Of Pandemics: Land Use Controls As Means Of Preventing Zoonotic Disease, Bailey Andree

Pace International Law Review

Zoonotic diseases are increasing in frequency as climate change worsens around the world, with the recent COVID-19 pandemic highlighting the inadequate mechanisms in place to counteract disease spread. This article reviews various zoonotic diseases and their patterns of spread, highlighting land use change as the key driver of disease to demonstrate the need for legal intervention. International land use law is a little-developed subsect of environmental law that holds the key to combating this disease spread, and this article proposes solutions through this legal lens. Land use techniques which may be used to combat disease spread include conservation laws, setback …

A Dynamical System Model Of Dengue Transmission For Rio De Janeiro, Brazil, Gregory Schmidt, Benjamin Whipple, Vinodh Chellamuthu, Xiaoxia Xie

Spora: A Journal of Biomathematics

The dengue virus is a serious concern in many parts of the world, including Brazil. As data indicates, a prominent vector for dengue is the mosquito Aedes aegypti. By using the dengue incidence records from the Brazilian SINAN database, we estimate the population of A. aegypti within the city of Rio de Janeiro. Using historical climate data for Rio de Janeiro and the computed population estimates, we extend an existing model for the population dynamics of mosquitoes to incorporate precipitation in aquatic stages of development for A. aegypti.

Panarchy Theory For Convergence, Shana M. Sundstrom, David G. Angeler, Jesse Bell, Michael J. Hayes, Jennifer Hodbod, Babak Jalalzadeh‑Fard, Rezaul Mahmood, Elizabeth Vanwormer, Craig R. Allen

School of Natural Resources: Faculty Publications

Coping with surprise and uncertainty resulting from the emergence of undesired and unexpected novelty or the sudden reorganization of systems at multiple spatiotemporal scales requires both a scientific process that can incorporate diverse expertise and viewpoints, and a scientific framework that can account for the structure and dynamics of interacting social-ecological systems (SES) and the inherent uncertainty of what might emerge in the future. We argue that combining a convergence scientific process with a panarchy framework provides a pathway for improving our understanding of, and response to, emergence. Emergent phenomena are often unexpected (e.g., pandemics, regime shifts) and can be …

Connecting Distinct Realms Along Multiple Dimensions: A Meta-Ecosystem Resilience Perspective, David G. Angeler, Jani Heino, Juan Rubio-Ríos, J. Jesús Casas

School of Natural Resources: Faculty Publications

Resilience research is central to confront the sustainability challenges to ecosystems and human societies in a rapidly changing world. Given that social-ecological problems span the entire Earth system, there is a critical need for resilience models that account for the connectivity across intricately linked ecosystems (i.e., freshwater, marine, terrestrial, atmosphere). We present a resilience perspective of meta-ecosystems that are connected through the flow of biota, matter and energy within and across aquatic and terrestrial realms, and the atmosphere. We demonstrate ecological resilience sensu Holling using aquatic-terrestrial linkages and riparian ecosystems more generally. A discussion of applications in riparian ecology and …

Novel Correlation Coefficients For Interval-Valued Fermatean Hesitant Fuzzy Sets With Pattern Recognition Application, İbrahi̇m Demi̇r

Turkish Journal of Mathematics

A combination of interval-valued Fermatean fuzzy sets with Fermatean hesitant fuzzy elements in the form of interval values is known as an interval-valued Fermatean hesitant fuzzy set. Since Fermatean hesitant fuzzy sets are effective instruments for representing more complex, ambiguous, and hazy information, interval-valued Fermatean hesitant fuzzy sets are expansions of these sets. This investigation will concentrate on four different types of correlation coefficients for Fermatean hesitant fuzzy sets and expand them to include correlation coefficients and weighted correlation coefficients for interval-valued Fermatean hesitant fuzzy sets. Finally, the numerical examples demonstrate the viability and usefulness of the suggested methodologies in …

Characterization Of Food Chain Clostridioides Difficile Isolates In Terms Of Ribotype And Antimicrobial Resistance, Pilar Marcos, Aoife Doyle, Paul Whyte, Thomas R. Rogers, Maire Mcelroy, Seamus Fanning, Jesus Maria Frias, Declan Bolton

Articles

The aim of this study was to characterize C. difficile isolates from the farm, abattoir, and retail outlets in Ireland in terms of ribotype and antibiotic resistance (vancomycin, erythromycin, metronidazole, moxifloxacin, clindamycin, and rifampicin) using PCR and E-test methods, respectively. The most common ribotype in all stages of the food chain (including retail foods) was 078 and a variant (RT078/4). Less commonly reported (014/0, 002/1, 049, and 205) and novel (RT530, 547, and 683) ribotypes were also detected, but at lower frequencies. Approximately 72% (26/36 tested) of the isolates tested were resistant to at least one antibiotic, with the majority …

On The Measure Of Noncompactness In $L_P(\Mathbb{R}^+)$ And Applications To A Product Of $N$-Integral Equations, Mohamed M. A. Metwali, Vishnu Narayan Mishra

Turkish Journal of Mathematics

In this article, we prove a new compactness criterion in the Lebesgue spaces $L_p({\mathbb{R}}^+), 1 \leq p < \infty$ and use such criteria to construct a measure of noncompactness in the mentioned spaces. The conjunction of that measure with the Hausdroff measure of noncompactness is proved on sets that are compact in finite measure. We apply such measure with a modified version of Darbo fixed point theorem in proving the existence of monotonic integrable solutions for a product of $n$-Hammerstein integral equations $n\geq 2$.

Local-Scale Impacts Of Water Hyacinth On Water Quality In A Hypereutrophic Lake, J. R. Corman, A. Z. Roegner, Z. Ogari, T. R. Miller, C. M. Aura

School of Natural Resources: Documents and Reviews

No abstract provided.

Trust And Subjective Knowledge Influence Perceived Risk Of Lead Exposure, Madeline Goebel, Chloe B. Wardropper

National Drought Mitigation Center: Faculty Publications

Lead exposure is a persistent environmental hazard that poses risks to human health. But motivating protective action is challenging with this low visibility hazard whose health effects are often subtle and chronic. Higher risk perception is generally associated with taking protective measures, so public health efforts prioritize risk messaging. Yet, little is known about perceptions of lead exposure risk among the U.S. public. Using cross-sectional data from a national survey of 1035 U.S. residents, we measured the role of trust in government management of lead and subjective knowledge about lead as predictors of perceived risk of lead exposure, controlling for …

Modelling Of Covid-19 Using Fractional Differential Equations, Rishi Patel, P. Sainani, M. Brar, R. Patel, X. Li, J. Drozd, F. A. Chishtie, A. Benterki, T. C. Scott, S. R. Valluri

Physics and Astronomy Publications

In this work, we have described the mathematical modeling of COVID-19 transmission using fractional differential equations. The mathematical modeling of infectious disease goes back to the 1760s when the famous mathematician Daniel Bernoulli used an elementary version of compartmental modeling to find the effectiveness of deliberate smallpox inoculation on life expectancy. We have used the well-known SIR (Susceptible, Infected and Recovered) model of Kermack & McKendrick to extend the analysis further by including exposure, quarantining, insusceptibility and deaths in a SEIQRDP model. Further, we have generalized this model by using the solutions of Fractional Differential Equations to test the accuracy …

Environmental Transmission Of Influenza A Virus In Mallards, Kim M. Pepin, Clinton B. Leach, Nicole L. Barrett, Jeremy W. Ellis, Kaci K. Vandalen, Colleen T. Webb, Susan A. Shriner

United States Department of Agriculture Wildlife Services: Staff Publications

Abstract

Influenza A viruses present a major challenge for animal and human health. They circulate widely in wild waterfowl and frequently spillover into poultry, emphasizing the need for risk-based surveillance in wild birds and an understanding of the relative importance of different transmission mechanisms. We addressed this objective with a replicated (N = 6) experimental infection study in which we serially exposed eight cohorts of four naïve contact mallards to an experimentally infected mallard and a shared water pool. Viral concentration in the water was a better predictor of transmission than several direct measures of viral shedding in the …

Changes In Wild Pig (Sus Scrofa) Relative Abundance, Crop Damage, And Environmental Impacts In Response To Control Efforts, Joseph W. Treichler, Kurt C. Vercauteren, Charles R. Taylor, James C. Beasley

United States Department of Agriculture Wildlife Services: Staff Publications

Background

As the population and range of wild pigs (Sus scrofa) continue to grow across North America, there has been an increase in environmental and economic damages caused by this invasive species, and control efforts to reduce damages have increased concomitantly. Despite the expanding impacts and costs associated with population control of wild pigs, the extent to which wild pig control reduces populations and diminishes environmental and agricultural damages are rarely quantified.The goal of this study is to quantify changes in wild pig relative abundance and subsequent changes in damages caused by invasive wild pigs in response to …

Individual‑Level Patterns Of Resource Selection Do Not Predict Hotspots Of Contact, Anni Yang, Raoul Boughton, Ryan S. Miller, Nathan P. Snow, Kurt C. Vercauteren, Kim C. Pepin, George Wittemyer

United States Department of Agriculture Wildlife Services: Staff Publications

Contact among animals is crucial for various ecological processes, including social behaviors, disease transmission, and predator–prey interactions. However, the distribution of contact events across time and space is heterogeneous, influenced by environmental factors and biological purposes. Previous studies have assumed that areas with abundant resources and preferred habitats attract more individuals and, therefore, lead to more contact. To examine the accuracy of this assumption, we used a use-available framework to compare landscape factors influencing the location of contacts between wild pigs (Sus scrofa) in two study areas in Florida and Texas (USA) from those influencing non-contact space use. …

Echinococcus Species Infections Among Wild Canids In Pennsylvania, Usa, Kayla Garrett, Justin Brown, Ryan K. A. Grunert, Jonathan Hunte, Mark G. Ruder, Kyle Van Why, Michael J. Yabsley, Christopher A. Cleveland

United States Department of Agriculture Wildlife Services: Staff Publications

Echinococcus species are zoonotic tapeworms that can impact the health of wildlife, domestic animals, livestock, and humans. Two species of interest in North America are Echinococcus multilocularis and Echinococcus canadensis (Echinococcus granulosus sensu lato). The primary wildlife definitive hosts for E. multilocularis and E. canadensis are similar, including red foxes (Vulpes vulpes), gray foxes (Urocyon cinereoargenteus), coyotes (Canis latrans), and wolves (Canis lupus). These two Echinococcus spp. use different intermediate hosts, including small mammals for E. multilocularis and artiodactylids for E. canadensis. Although historically absent from …

Understory Arthropod Diversity In A Mixed Dryland Ecosystem, Hawai‘I, Matthew J. Madeiros, William P. Haines, Clare E. Aslan, Aaron B. Shiels, Asa Aue, Christina T. Liang

United States Department of Agriculture Wildlife Services: Staff Publications

Tropical drylands are among the most threatened ecosystems worldwide, and fewer than 10% of tropical dry forests in Hawai‘i remain intact. Terrestrial arthropods comprise most of the endemic fauna on many islands, including Hawai‘i, where they provide ecosystem services such as pollination, decomposition, and a reliable prey base for predators. The objective of our study was to measure understory arthropod diversity and relative abundances in two common habitat types within dryland Hawai‘i—a non-native grassland, dominated by Cenchrus setaceus (fountain grass) with few native shrubs, and a native woodland, dominated by Metrosideros polymorpha (‘ōhi‘a). We used generalized additive models to examine …

Evaluation Of Roost Culling As A Management Strategy For Reducing Invasive Rose‑Ringed Parakeet (Psittacula Krameri) Populations, C. Janes Anderson, Leonard A. Brennan, William P. Bukoski, Steven C. Hess, Clayton D. Hilton, Aaron B. Shiels, Shane Siers, Bryan M. Kluever, Page E. Klug

United States Department of Agriculture Wildlife Services: Staff Publications

Rose-ringed parakeets (Psittacula krameri) are one of the most widespread invasive avian species worldwide. This species was introduced to the island of Kaua‘i, Hawai‘i, USA, in the 1960s. The rapidly increasing population has caused substantial economic losses in the agricultural and tourism industries. We evaluated the efficacy of a roost culling program conducted by an independent contractor from March 2020 to March 2021. We estimated island-wide minimum abundance was 10,512 parakeets in January 2020 and 7,372 in April 2021. Over 30 nights of culling at four roost sites, approximately 6,030 parakeets were removed via air rifles with 4,415 …

Social Network Analysis Of White-Tailed Deer Scraping Behavior: Implications For Disease Transmission, Michael E. Egan, Kim M. Pepin, Justin Fischer, Scott R. Hygnstrom, Kurt C. Vercauteren, Guillaume Bastille-Rousseau

United States Department of Agriculture Wildlife Services: Staff Publications

Host contact structure affects pathogen transmission in host populations, but many measures of host contact do not distinguish contacts that are relevant to pathogen transmission from those that are not. Scrapes are sites for chemical communication by white-tailed deer (Odocoileus virginianus) during the breeding season and potential sites of transmission of prions, the causative agent of chronic wasting disease (CWD). Scrape-related behaviors vary in their probability of transmitting prions to or from the environment, suggesting that behavior be combined with contact structure to better reflect potential heterogeneity in prion transmission at scrapes. We recorded visits and behaviors by …