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Direct Computations Of Spatially Resolved Viscoelastic Moduli Of Biomolecular Condensates, Liwen Gu

McKelvey School of Engineering Graduate Student Theses & Dissertations

Biomolecular condensates are viscoelastic materials formed by liquid-liquid phase separations (LLPS) of biopolymers. In this study, we develop a modified graph Laplacian-based collective model to characterize viscoelastic heterogeneity within condensates based on results of lattice-based Metropolis Monte Carlo (MMC) simulations. By integrating random graph models and simulations of A1-LCD, a type of intrinsically disordered protein, we examine how network topology influences storage modulus, loss modulus, crossover frequency, and relaxation time spectra. Our results reveal a strong correlation between topological features and mechanical response, with the condensate interior exhibiting higher stiffness and faster relaxation than the interface. The relaxation spectra provide …

Functional Devices Based On Freestanding 2d Materials, Shijue Xu

McKelvey School of Engineering Graduate Student Theses & Dissertations

Two-dimensional (2D) materials have attracted extensive attention in the field of nanoelectronics due to their atomic-scale thickness, high surface-to-volume ratio, tunable electronic properties, and compatibility with low-temperature processing. These characteristics make them highly suitable for the construction of emerging device architectures, particularly in both ionic and electronic devices.

In this work, we investigate the application of 2D materials in two distinct classes of devices: ionically-driven memristors and electronically-dominated metal–semiconductor contacts. For the memristor study, we fabricate heterostructure-based resistive switching devices using h-BN and WSe₂ as active layers. These 2D material-based memristors exhibit stable power consumption loops and high linearity …

Biogenic Synthesis Of Metallic And Bimetallic Oxide Nanoparticles For Water Treatment Applications, Gunarani G.I

Theses and Dissertations

Access to clean water is a quality-of-life indicator. The availability of clean water apart from water scarcity is marred due to contamination by heavy metals and synthetic dyes, posing a grave environmental and public health challenge. This necessitates the implementation of advanced and sustainable treatment solutions towards water remediation. This research work focusses on the fabrication and application of biogenic and chemically synthesized metallic and bimetallic nanoparticles for the efficient removal of uranium, chromium, and toxic dyes from aqueous environments. The study particularly focuses on zero-valent (C-Fe and B-Fe) and bimetallic (C-NiFe and B-NiFe) nanoparticles, evaluating their adsorption capabilities and …

Rare Earth Mineral Flotation – A Comparison Of Silicates To Oxides, Carbonates And Phosphates, Abdul Mamudu

Graduate Theses & Non-Theses

Flotation is a processing method used to separate valuable minerals from gangue minerals based on differences in hydrophobicity. When applied to ores bearing rare earth minerals (REMs) variations in rare earth element (REE) concentrations within the REMs can lead to inconsistent flotation results. Prior work at Montana Technological University examined the adsorption of collectors on the surfaces of synthetic REMs to assess recovery via flotation. Previous studies showed that the results obtained for Salicyl Hydroxamic Acid (SHA) on rare earth oxides REO), rare earth carbonates (REC), and rare earth phosphates (REP) vary depending on the coordination number (CN) and the …

First-Principles Studies Of Electrical Polarization Effects In Ferroelectrics, Antiferroelectrics And Defects, Louis Alaerts

Dartmouth College Ph.D Dissertations

Over the last few decades, density functional theory (DFT) has emerged as a formidable tool in the field of computational material science. Not only has it become a complementary method approach to experiments by rationalizing the many complex properties of materials but its formidable predictive power can also be used to identify the most promising candidates for specific applications. Point defects in semiconductors have become an important platform for the development of quantum networks due to their ability to act as spin-photon interfaces. Spectral diffusion, the broadening of the optical emission line, can significantly impact the performance of these defect-based …

Low-Field Magnetoresistance In Nanocomposites Of La₀.₇Sr₀.₃Mno₃ And Metal Oxides, Nicholas K. Thiel-Hudson

University Scholar Projects

Pure La_0.7Sr_0.3MnO₃ (LSMO) exhibits colossal magnetoresistance (CMR) with large applied magnetic field over a narrow temperature range (intrinsic behavior), limiting its application to narrow temperature ranges. In contrast, the extrinsic CMR effect originates from inhomogeneities at larger length scales, such as grain boundaries and phase separation, where the structural features act as tunneling barriers, leading to a low-field magnetoresistance (LFMR) response, thereby expanding the application of LSMO into the low-field regime over a broader temperature range. In this work, the magnetotransport behavior of pure LSMO thin film is compared to the composite layered heterostructures of …

Understanding Initial Capacity Loss In Substituted Layered Oxide Cathodes For Lithium-Ion Batteries, Gy Wyco

Graduate Dissertations and Theses

Layered oxide LiCoO₂ (LCO) pioneered the commercialization of lithium-ion batteries (LIBs) in 1991, yet the growing demand for higher energy density has driven the development of substituted layered oxides, including LiNiᵧMn𝓏Co₁₋ᵧ₋𝓏O₂ (NMC) and LiNiᵧCo₁₋ᵧ₋𝓏Al𝓏O₂ (NCA). Despite the increased energy density, achieving full lithium reversibility during the first charge-discharge cycle remains a critical challenge: approximately 0.08–0.11 Li is “irreversibly” lost after delithiation, resulting in a substantial capacity loss of 10–15%. This loss is conventionally attributed to bulk lithium transport limitations arising from three interrelated factors: (1) contraction of the c-axis lattice during lithiation, (2) reduced rate of tetrahedral site hopping (TSH) …

Characterizing Heating And Resistance Properties Of Nichrome Burn Wire To Be Used In Cubesat Actuation, Noah Moix

Mechanical Engineering Undergraduate Honors Theses

This thesis investigates the use of Nichrome 60 wire as a burn wire mechanism, commonly utilized in CubeSats and other aerospace engineering applications requiring precise, single-use release systems. The experiment focused on characterizing the thermal and resistive behavior of Nichrome 60 wire under Joule heating conditions. Four wire configurations were tested: 34-gauge and 36-gauge wires, each at lengths of 1 inch and 2 inches. Each configuration was subjected to a constant current until thermal failure occurred. During testing, real-time measurements of electrical resistance and wire temperature were recorded. This data was used to generate resistance vs. temperature profiles for each …

Thermal Characterization Of 3d Printing Materials For Increasing Insulation Potential And Practicality, Jackson H. Minnick

Mechanical Engineering Undergraduate Honors Theses

This study served as an exploration into the possible existence of a correlation between the infill lattice structure of a 3D printed wall section and the thermal performance of that sample as characterized by thermal conductivity measured in units of Watts per meter Kelvin. With the continual increase in the practicality, fidelity, and applicable fields of additive manufacturing, namely FDM 3D printing, research on specific print characteristics and their effects on the material and thermal characteristics of the part in question is steadily becoming more commonplace. Although the thermal conductivity of 3D printed wall sections as a function of infill …

Remaining Life Analysis Of Pipeline Gas With Extreme Value Theory, Rony Prayitno Simeon, Eddy Sumarno Siradj, Tedi Kurniawan

Journal of Materials Exploration and Findings

Energy and chemical companies use pipelines to transfer oil, gas, and other materials from one place to another, within and between their plants. Pipeline integrity is an important concern because pipeline leakage could result in serious economic or environmental losses. Some research has applied to understand the effect of extrapolation value of the minimum thickness of pipeline by using the Extreme Value Theory. In this research, both statistical models and Extreme Value methods were applied and developed for the reliability of the pipeline by assuming the constant corrosion rate and deviation due to measuring devices were neglected. The research obtained …

Integrity Assessment Of Shipping Line Pipelines Using Risk-Based Analysis To Determine Risk And Maintenance Strategies, Ade Ratih Anggraini, Dwi Marta Nurjaya

Journal of Materials Exploration and Findings

Pipeline Shipping Lines X, Y & Z are classified as critical infrastructure, being the only transportation through the crude oil lifting from P and R location to the transfer station in NM Area. To maintain the workflow of the Shipping Line, integrity assessments and risk evaluation are required to ensure the operational and safety. Anomalies were found by analysing inspection, monitoring, and repair data, while the pipelines' future integrity was assessed by calculating the remaining life. Risk-Based Analysis (RBA), which is a modification of Kent Muhlbaeur's method, is employed to conduct the risk assessment using the Probability of Failure (POF) …

Characteristics Of Carbonaceous Materials Synthesized From Palm Oil Empty Fruit Bunch Waste Using Ferrocene Catalyst, Ahmad Nabil Shahab, Adinda Izzatul Islam, Afif Wardana, Ilham Nur Dimas Yahya, Ary Yanuar Tri Amalia, Nofrijon Sofyan, Donanta Dhaneswara

Journal of Materials Exploration and Findings

The synthesis of carbonaceous materials for reduced graphene oxide (rGO) precursors using oil palm empty fruit bunches waste as a carbon source offers a sustainable solution for waste management in the palm oil industry while delivering high-performance materials. The oil palm empty fruit bunches were carbonized, followed by acid washing, pyrolysis with ferrocene (8%, 12%, and 16% variations), and ultrasonication to produce rGO. The structural, electronic, and morphological properties of the rGO were analyzed using various characterization techniques. The band gap values decreased with increasing ferrocene concentration, from 1.14 eV (8%) to 1.06 (16%), indicating enhanced electronic conductivity. XRD analysis …

Assessment Of H2s-Induced Cracking Susceptibility In Steam Line Pipes And Weld Zones During Geothermal Well Construction, Riene Kaelamanda Pragitta, Yudha Pratesa

Journal of Materials Exploration and Findings

The susceptibility of steam line pipes, especially in the HAZ (heat-affected zone) and weldment areas, to hydrogen sulfide in the geothermal industry is crucial to understand from the early stages, particularly during construction. The combination of tensile stress from residual stresses after welding and metallurgical phase transformation makes the joint areas vulnerable to sulfide stress cracking. This condition becomes even more extreme when the equipment operates during the well stimulation phase. This research assesses the severity of H₂S-induced cracking using NACE MR0175 and ISO 15156-1 standards, focusing on the effects of pH and partial pressure of H₂S (p_{H₂S …}

Defect Characterization Of Sic Schottky Barrier Diode Using Deep Level Transient Spectroscopy, Zachary I. Mccoy

Electrical Engineering and Computer Science Undergraduate Honors Theses

The aim of this project is to use deep level transient spectroscopy (DLTS) to energetically evaluate defects by using the carrier concentration dependence on temperature and where these carriers may experience deviation from standard predictions. These defects become apparent through multiple C-V measurements that are swept through a temperature range. By analyzing trends with respect to temperature, the defects can be energetically “located,” and thus identified. This identification can help streamline semiconductor material manufacturing/growth because DLTS identifies potential defect causes by providing data to characterize semiconductor mid-band defects. DLTS can assess nearly all parameters associated with traps/defects including density, thermal …

The Evolution Of Nanoparticles In Nanoparticle Doped Optical Fibers, Mary Cahoon

All Dissertations

Optical fiber and fiber laser technologies based on silica glass are critical to many technologies today. One method to improve the optical performance of laser fibers is engineer the local environment around the active elements in the glass. To that end, this Dissertation focused on the fabrication and characterization of fibers made with nanoparticles incorporated into the glass to control the local composition. First, the nanoparticle composition and structure was analyzed as it evolved from from the initially-synthesized form to incorporation into the dense aluminum-silicate glass. The aluminum oxide in the glass was found to be important not only to …

Development And Characterization Of A Pro-Angiogenic Peptide Amphiphile For Deep Dermal Burn Healing Via Spray Delivery, Loria Dimartino

Honors Theses

Severe burns and other dermatological injuries are frequently accompanied by a range of comorbidities and aesthetic challenges that patients must contend with. The complexity of burn care is exacerbated by the lack of a standardized surgical protocol, as treatment strategies are tailored to individual patient factors, including overall health status, wound size and location, as well as the expertise and resources available to the surgical team. Most commonly, deep dermal burns are treated through grafting, which effectively covers the injury site, but requires the creation of a second wound on the body of approximately the same size. This produces a …

Tailoring The Morphology Of Block Copolymers Via Solvent-Vapor Annealing, Bayleigh Madelin Loving

Honors Theses

Triblock polystyrene-polyisobutylene-polystyrene (PS-PIB-PS) copolymers have widespread applications from thermoplastic elastomers to protective coatings for ballistic applications. The incompatibility between the soft PIB and hard PS phases leads to phase separation and subsequent formation of morphological domains like lamellae and cylinders. The structures are stabilized by physical crosslinks, which can greatly improve the toughness of the triblock systems by preventing chain pullout during tensile deformation. We tailored the morphologies (achieving different morphologies with the same block copolymer) by changing the annealing conditions of the block copolymers. Solvent vapor annealing was used to selectively activate the mobility of a particular block, causing …

Ultrafast Laser Surface Structuring For Wettability Control On Copper, Akshay Arvind Nagvenkar

All Theses

Wettability is a crucial surface property influencing various phenomena, including heat transfer, cell adhesion, and corrosion. Engineering devices can achieve superior performance by precisely manipulating surface wettability. As a result, extensive research has focused on developing surfaces that exhibit either extreme water attraction (superhydrophilic) or strong water repellency (superhydrophobic). Tailoring surface wettability paves the way for numerous applications, such as drag reduction in marine vessels, controlled drug delivery, efficient water collection, advanced liquid transport systems, oil-water separation, anti-corrosion coatings, friction reduction, and self-cleaning materials. Ultrafast laser surface structuring is a promising approach for engineering multifunctional surfaces, effectively modifying material properties …

Developing Reduced Order Models For Gas Bubble Formation In Irradiated Metals Using Integrated Phase Field Modeling And Koopman Operator Theory, John M. Eggemeyer V

All Theses

Irradiation damage in materials is prevalent in nuclear components, posing significant risks in the safety and reliability of nuclear reactors. Phase field models offer a versatile framework for modeling irradiation damage in materials at mesoscales. Such high fidelity method has been used to model the formation of fission gas bubbles superlattice, a microstructure array occurs at certain irradiation conditions (dose, dose-rate, and temperature). To overcome the high computational cost of phase field modeling, Koopman operator theory is applied to create reduced order models, allowing for instantaneous simulations of fission gas bubble behaviors. These low fidelity models are integrated into machine …

Mechanistic Insights Into Polymer-Assisted Graphene Exfoliation: The Roles Of Velocity, Adhesion, Cohesion, Temperature, Peeling Mode, And Edge Defect Via Coarse-Grained Molecular Dynamics, Linjiale Dai

All Theses

Graphene exfoliation is a critical step in the fabrication of high-quality graphene

layers. However, the underlying fracture mechanisms remain poorly understood. In this

work, I employed coarse-grained (CG) molecular dynamics (MD) simulations to

investigate how factors such as interfacial binding energy, substrate cohesion, temperature,

peeling mode, and edge defects influence the outcome of the exfoliation process. To model

polymer-assisted mechanical exfoliation, I used a finite-size system in which multilayer

graphene (MLG) is sandwiched between two thin polymer films. Leveraging the

spatiotemporal efficiency of the CG model, I performed fifty simulation iterations per

parameter set and analyzed the results from a …

Signal Modeling Of High Purity Germanium Detectors, Brooke Parker Thibodeau

Honors Scholar Theses

Pulse shape analysis can be used to analyze radiation incident on a semiconductor diode detector. Finite element analysis (FEA) can be used to simulate high purity germanium detectors with user-specified geometry, impurity concentration, and bias voltage. Subsequent streamline calculation can be used to conduct pulse shape analysis for single and multiple site gamma-ray interactions within the detector volume. Cross sections of the detector can be visualized by contour plots of the electric field, drift velocity magnitude, and collection time, as well as t30 and t90 rise-time values.

Flowermd: A Flexible Library Of Organic Workflows And Extensible Recipes For Molecular Dynamics And Machine-Learned Coarse-Grained Simulations Of Isotropic And Anisotropic Systems, Marjan Albooyeh

Boise State University Theses and Dissertations

Molecular dynamics (MD) simulations are essential tools for understanding and predicting material behavior at the atomic and molecular scale. While numerous open-source software packages exist for different stages of MD simulations, assembling a seamless, end-to-end workflow for complex multi-step simulations remains a significant challenge. In this work, we develop FlowerMD, a flexible and extensible Python-based software package that automates molecular simulation workflows, improving both reproducibility and ease of use.

FlowerMD provides modular components that simplify the end-to-end execution of MD workflows, from system initialization and force field application to simulation execution. It also automates multi-step simulation workflows through Recipes—predefined, modular …

Additively Manufactured Dic Patterns For Extreme Environments And The Emerging Technology Impact On The Licensing Of Nuclear Reactors, Kaelee Ann Novich

Boise State University Theses and Dissertations

At the end of 2023, countries from the United Nations Climate Change Conference announced to triple nuclear energy capacity by 2050. The United States makes up approximately 30% of the world’s nuclear capacity; however, only 19% of the energy generated in the Nation is from nuclear power plants. Majority of nuclear reactors are over 40 years old, resulting in reactor closures and no new ones being built. Accordingly, it will be impossible to triple nuclear capacity in the next 25 years by relying on only existing reactors. The nuclear fleet must expand to include advanced reactors to meet energy demand …

Exploring Metal Additive Manufacturing In Martian Atmospheric Environments, Zane Mebruer

Mechanical Engineering Undergraduate Honors Theses

On-surface manufacturing is key to the success of a planetary colonization, especially that of Mars. However, traditional subtractive manufacturing processes are equipment, energy, and material intensive, meaning novel additive manufacturing (AM) processes must be pursued for this end. Selective laser melting, one of the most effective and versatile AM methods, would be incredibly beneficial to a Martian mission but requires an artificial argon atmosphere to create effective parts. The purpose of this study was to examine if carbon dioxide, the gas that makes up over 95% of Mars’ surface atmosphere, would be a sufficient substitute for argon in SLM fabrication. …

Adjustable Dynamometer Motor Mount, Garrett Carson Ng, Elijah Siegel Reuven, Ethan Fong, Daniel Larimer

Mechanical Engineering

The Cal Poly Electrical Engineering Department and sponsor Dr. Dolan needs a manufacturable motor fixture that securely aligns motors of various sizes with dynamometers. Previous lab motor fixtures could not accommodate motors of different sizes, making precise alignment between motors and dynamometers time-consuming and unreliable. Our team developed a modular, manufacturable fixture capable of aligning various motor sizes quickly, accurately, and securely, enhancing lab consistency and usability.

Development And Application Of Computational Tools For Organic Molecular Structure Prediction From Small Molecule Crystal Structure Determination To Polymer Persistence Length, Madilyn E. Paul

Boise State University Theses and Dissertations

This dissertation utilized two areas of computational simulations for organic molecular structure prediction. First, we investigate the possible polymorphism of both barbituric acid dihydrate (BTADH) and violuric acid monohydrate (VAMH) using density functional theory. Crystalline structures that exhibit polymorphism have an increased level of uncertainty in predicting their chemical and physical properties. BTADH was previously thought to undergo a subtle phase transition from P2₁/n to planar Pnma at 217 K. We conclude that barbituric acid dihydrate exhibits crystalline disorder in which the molecules are crystallized in a non-merohedrally twinned P2₁/n configuration below …

Reproducible Infrastructure For Modeling Thermoplastic Polymer Fusion Welding, Chris D. Jones

Boise State University Theses and Dissertations

Aircraft materials must balance the demands of being light-weight and fuel efficient with being safe, durable, and strong. Carbon-fiber reinforced polymer composites are able to meet both of these requirements, and as a result, they are being utilized more and more in aircraft manufacturing. Thermoset polymers are typically used as the matrix material in these composites; however, thermoset polymers require long curing times in large autoclave ovens in order to form chemical cross-links, which once present, cannot be melted upon further heating. As a result, joining smaller thermoset composite parts together to build larger structures requires using mechanical fasteners, which …

Empirical Models For The Prediction Of Lattice Constants In Perovskite Materials, Bryan Wright

Boise State University Theses and Dissertations

Perovskites are a class of materials famous for their many functional properties and are envisioned as a material that will pave the way for scientific advancement in the fields of renewable energy, high tech sensors, lasers, catalysis, computer chips, and many others. This wide variety of applications is not the result of a single fantastic property of perovskite materials but rather stems from the perovskite structure’s ability to display a host of functional properties. One area where there is room for significant improvement is in the rate of perovskite discovery. The high stability of the perovskite structure is responsible for …

Mechanistic Investigation Of Ring-Opening Polymerization Of Polycaprolactone Using Tin(Ii) Catalysts: Ligand Effects And Biomedical Applications, Eva-Larue M. Barber

Honors Scholar Theses

This research explores the mechanistic aspects of ring-opening polymerization (ROP) of ε-caprolactone (CL) to produce polycaprolactone (PCL), a biodegradable polymer widely used in biomedical applications. The study investigates how light exposure and catalyst concentration influence polymerization efficiency, using tin(II) 2-ethylhexanoate [Sn(Oct)₂] as the catalyst in a non-polar toluene solvent at 90 °C. Reactions were conducted under either ambient light or black light bulb (BLB) illumination, with monomer-to-catalyst ratios of 1:1 and 200:1.

Proton nuclear magnetic resonance (¹H NMR) spectroscopy was used to analyze conversion efficiency by tracking the disappearance of monomer signals and appearance of characteristic PCL peaks. Results revealed …

Porous Geopolymer Composite For Geotechnical Applications, Karla Viviana Sierra Flores

Theses and Dissertations

This research investigates the development of a porous geopolymer cement grout for soil grouting applications, aiming to reduce carbon emissions associated with Portland cement while maintaining critical performance characteristics such as strength and permeability. Class F fly ash and metakaolin were used as aluminosilicate precursors, activated by sodium silicate and sodium hydroxide solutions. The addition of hydrogen peroxide served as a foaming agent to introduce porosity by creating a thermodynamic reaction that releases oxygen gas during mixing. Compressive strength, porosity, and hydraulic conductivity were evaluated, with results showing that metakaolin significantly increased compressive strength due to its smaller particle size …