Digital Commons Network^™

Contents 43(1)

Aliso: A Journal of Systematic and Floristic Botany

No abstract provided.

A Vascular Flora Of Ladd Canyon, Santa Ana Mountains, Orange And Riverside Counties, California, Daniel P. Donovan, Amanda E. Fisher

Aliso: A Journal of Systematic and Floristic Botany

The Santa Ana Mountains are a coastal range on the border of Orange and Riverside counties in southern California. Ladd Canyon, covering 18.2 km² in the Cleveland National Forest, is a botanical black hole relative to the rest of the Santa Ana Mountains because of limited access. It is dominated by chaparral and coastal sage scrub and includes significant knobcone pine (Pinus attenuata) stands and riparian woodland. Features that make it an intriguing area to study include the only serpentine soil in the Santa Ana Mountains, large tracts of habitat that have no recorded fire history, steep …

The Rare, Endangered And Endemic Plants Of The California Floristic Province Portion Of Baja California, Mexico, Bart C. O'Brien, Jon P. Rebman, José Delgadillo-Rodríguez, Kanchi Natarajan Gandhi, Steven A. Junak, Thomas A. Oberbauer, Hugo Riemann, Sula E. Vanderplank

Aliso: A Journal of Systematic and Floristic Botany

The California Floristic Province (CFP) is one of the world’s biodiversity hotspots, known for high levels of plant endemism. The CFP extends from southwestern Oregon, through cismontane California, south to northwestern Baja California, Mexico. The flora of the California Floristic Province portion of Baja California (CFP Baja) has historically been poorly documented and understood. This study provides data to address this deficiency by inventorying and assessing the native flora of CFP Baja from a conservation perspective: evaluating the rarity, endangerment and endemism of its native taxa. A total of 2392 taxa were assessed to determine this listing of rare, endangered …

Swosu Research And Scholarly Activity Fair 2025, Swosu Office Of Sponsored Programs

SWOSU Research and Scholarly Activity Fair Programs

On behalf of the members of the University Research and Scholarly Activity Committee (USRAC) and the Office of Sponsored Programs (OSP) at Southwestern Oklahoma State University (SWOSU) — welcome to the Thirty-Third SWOSU Research and Scholarly Activity Fair!

This year’s event features 99 poster presentations and 9 oral presentations, showcasing the work of over 170 student and faculty researchers, writers, presenters, artists, collaborators, and faculty sponsors. These presentations represent a wide array of scholarly and academic activity from across SWOSU’s academic community, including the Departments of Art, Communication, and Theatre; Allied Health Sciences; Biological Sciences; Business; Chemistry & …

Characterizing And Targeting The Non-Catalytic Functions Of Phosphatase Of Regenerating Liver 3 (Prl-3) In Oncogenesis And Cancer Progression, Jeffery T. Jolly

Theses and Dissertations--Molecular and Cellular Biochemistry

Phosphatase of Regenerating Liver 3 (PRL-3) is frequently upregulated in various cancers and is associated with poor patient prognosis. Although traditionally studied for its phosphatase activity, PRL-3 also interacts with the CNNM family of magnesium transporters through its catalytic site, and these two functions are mutually exclusive at any given time. Most previous studies relied on a commonly used PRL-3 mutation that disrupts both phosphatase activity and CNNM binding, making it challenging to determine which function drives its oncogenic effects. To address this gap in the field, I utilized a panel of PRL-3 mutants that selectively disrupt either phosphatase activity …

Exploring The Reproductive Phenology Of Feral Horses In North America, Mattie Budine

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Feral horses (Equus ferus caballus) are a prolific species in western North America. Due to their life history traits and history of domestication, they have a longer foaling period compared to native ungulates, such as elk (Cervus canadensis) and mule deer (Odocoileus hemionus). I examined the observed foaling seasons of different regional herds throughout North America to identify if foaling seasons are uniform across latitudes or if they present a latitudinal shift similar to ungulates. My dataset (n=523 foals) consisted of various research studies and unpublished observations of different feral horse herds throughout North America. The results are graphs comparing …

Bridging Prairie Restoration And Regenerative Agriculture With Compost Tea / The Rocket Incident: Post-Fire Soil Microbe Recovery On The Eastern Washington University Restoration Site, April Hersey

EWU Masters Thesis Collection

Inland Pacific Northwest prairie is an endangered ecosystem that has been reduced by conversion to agriculture. There is growing interest in the role of soil microorganisms in prairie ecosystems, which may be crucial for restoration of the plant community through interspecies interactions within the rhizosphere. One method for improving soil microorganism community composition is compost tea: enriched liquid compost extract. Compost tea is used in regenerative agriculture to improve crop yields and protect against pathogens. While research has supported compost tea application in regenerative agriculture, it has not been widely studied in the context of ecosystem restoration. After beginning a …

Use Of Public Information For Prospecting And Nest Site Selection By Western Bluebirds (Sialia Mexicana), Fatime Wadad Jomaa

Cal Poly Humboldt theses and projects

Public information that provides an estimate of reproductive success, in addition to information gained through direct environmental sampling, may provide an efficient way for individuals to assess future breeding site quality. I investigated the hypothesis that prospecting Western Bluebirds (Sialia mexicana) use post-breeding public information to select nest sites the following year across winegrape vineyards in Napa Valley. In late summer of 2023, I installed 200 nest boxes across 10 vineyards without prior box history. To simulate conspecific presence and successful breeding, boxes within 5 experimental vineyards were designated either full-treatment (boxes directly broadcasting adult song and nestling …

Characterization Of The Erv41-Erv46 Complex As A Retrograde Receptor For Misfolded Secretory Proteins, John Andrew Fuesler

Dartmouth College Ph.D Dissertations

The Endoplasmic Reticulum (ER), the site of secretory protein biosynthesis

provides a favorable environment to promote polypeptide folding, protein

oligomerization and export. Although the ER contains many chaperones and other

factors that assist in protein folding, this process is error prone. Eukaryotes have

evolved protein quality control checkpoints to maintain homeostasis in the secretory

pathway, however these processes are imperfect and may result in proteotoxicity

when toxic levels or aggregates of proteins arise. Mutations in proteins involved in

trafficking in the early secretory pathway are closely associated with disease states.

Therefore, it is of great interest to further understand how …

Evaluation Of The Maneuverability Of An 85m Fishing Trawler (Focusing On Dynamic Stability), Chun-Ki Lee, Su-Hyung Kim

Journal of Marine Science and Technology–Taiwan

Most fishing vessels are less than 100 meters in length, so IMO maneuverability standards do not apply. As a result, studies on the maneuverability of fishing vessels are considerably fewer compared to those on merchant ships. However, with technological advancements, the size of fishing vessels continues to grow, and as more fishermen are on board, accidents could lead to fatal casualties. In response, the authors determined that research on the maneuverability of fishing vessels is urgently needed. Thus, the authors conducted a maneuverability evaluation on a fisheries training vessel with the hull shape of a fishing trawler, 85 meters in …

A Hybrid Image Filtering Approach For Improving Edge Detection Of Riverbed Particles With Complex Textures, Po-Wei Lin, Hsun-Chuan Chan

Journal of Marine Science and Technology–Taiwan

The distribution of particle size in gravel-bed rivers affects the flow condition, sediment transport, and river morphology. However, conventional particle size analysis is laborious and time-consuming. To enhance the efficiency of particle size analysis, image-based methods have been widely explored, but complex particle textures increase the difficulty in identifying particle edges during image analysis. This study develops a filtering approach based on the rolling guidance filter and leverages the differences in grayscale gradients between particle edges and textures to design a guidance image tailored for the rolling guidance filter. This design enables the filter to preserve particle edges while smoothing …

Comparison Of Canopy Materials To Improve The Performance Of Sea Anchors Used For Fishing Operations, Namgu Kim, Su-Hyung Kim, Yoo-Won Lee, Kyung-Jin Ryu

Journal of Marine Science and Technology–Taiwan

Sea anchors used for fishing operations help improve catch rates by stabilizing vessel drift speeds to match tidal or ocean currents. The underwater resistance experienced by a sea anchor's canopy significantly impacts its performance, yet there has been limited research on canopy materials. This study investigates how different canopy materials can enhance sea anchor performance. Specifically, we tested sea anchors made from three fabrics: the currently used polyamide (PA) material, PA material with increased yarn density in the weft direction, and polyester (PES). Using Korean national standards, we compared the yarn density, weight, water absorption capacity, drying rate, air permeability, …

Research On Ship Track Prediction Based On Ipso-Cnn, Xiangen Bai, Nuo Chen, Xiaofeng Xu

Journal of Marine Science and Technology–Taiwan

With the rapid development of the global economy, international imports and exports have become increasingly important. Timely and effective tracking and prediction of ship trajectories are important in the face of complex maritime traffic. Based on AIS data, this study establishes a ship trajectory prediction model combining improved particle swarm optimization (IPSO) and a convolutional neural network (CNN) that uses the ship's historical navigation trajectory data to predict the future navigation trajectory. The historical ship trajectory data of the Port of Ningbo-Zhoushan were selected for the experiment, and the IPSO-CNN model experiment results were compared with those of other models. …

Using Secreted Biomarkers In The Development Of The Detection Of Advanced Cancer Screening System, Elaine Vanterpool

Student Posters

An estimated 20 million people globally develop cancer every year. Furthermore, over 9.7 million people die from cancer. The best prognosis of cancer occurs when detected early. Cancer, in its early stages, usually does not display clinical symptoms and is usually not detectable by symptoms and is diagnosed later. The goal of the D.A.C.S. is to provide a screen that can detect cancer. It is hypothesized that developing a cancer detection system/technology, named D.A.C.S. (Detection of Advanced Cancer Screening) system, can help with early cancer detection, while still being affordable for the general public.

Mutation In Rpl10 Disrupts Ribosomal Function And Contributes To Autism Spectrum Disorder, Elaine Vanterpool, Paula Ramirez-Mejia

Student Posters

Autism Spectrum Disorder (ASD) is a neurodevelopmental disorder characterized by difficulties in social communication and restricted, repetitive behaviors, interests, or activities. A study in 2020 estimated that ASD affects 2.8% of children in the United States (NIMH). The RPL10 gene, encodes the Ribosomal protein L10, has been implicated in ASD and plays a crucial role in protein synthesis and neuronal development, contributing to a protein essential for assembling the large ribosomal subunit. This study investigates how variations in PRL10 (Ribosomal Protein L10) can contribute to ASD.

Eed Gene Variants And Irritable Bowel Syndrome: A Genetic Approach To Understanding Ibs, Elaine Vanterpool, Ted Howard

Student Posters

Irritable Bowel Syndrome is a disease linked with the gastrointestinal system and seen to cause bloating, abdominal pain, and harmful alterations in the digestive system. Its cause is complex and is known to have both environmental and genetic factors. Recent studies have shown that IBS occurs due to genetic variations, which leads to the pathogenesis of IBS. One gene, the EED (Embryonic Ectoderm Development) gene has been involved in various biological processes, particularly gastrointestinal functions. The purpose of this study is to explore the potential relationship between the EED gene and IBS.

Analyzing The Inhibition Of Chemical Compounds On Collagenase In P. Aeruginosa, Elaine Vanterpool, Marielle Cooper, Kiara Cameron

Student Posters

Pseudomonas aeruginosa is an opportunistic pathogen that poses significant challenges in clinical treatment due to its production of collagenase. This bacterium can cause several infections including pneumonia, meningitis, septicemia, and a host of other diseases. Collagenase acts as a key virulence factor by breaking down collagen in the host’s extracellular matrix, allowing bacteria to invade tissues. This study hypothesized that the effects of cell secreted collagenase would be inhibited by metronidazole, vanillin, and silver nanoparticles to reduce the pathogenicity of Ps. aeruginosa related infections.

Analysis Of Cys294arg Mutation In Cs1 Associated With Periodontal Ehlers-Danlos Syndrome & Collagen Degradation, Elaine Vanterpool, Amy Aboki

Student Posters

C1s enzyme plays a crucial role in the immune system so that the body can fight infection and repair damaged tissues. However, if it is not working properly, it will do more harm than good. This is shown in the case of periodontal Ehlers-Danlos syndrome (pEDS), a rare genetic disorder whereby C1s breaks down collagen I, a protein that gives structure and strength to connective tissues. Severe gum disease, loose teeth and premature teeth is a result of this. The purpose of this study is to identify and analyze the pathogenicity of C1s mutations and association in pEDS.

Effect Of Creatine Monohydrate On Spatialworking Memory, Body Weight, And Food Intake In Male And Female Rats, Cyrilla H. Wideman, Alexandria Iemma, Olivia Janolo, Anastasiya Kalinina, Helen M. Murphy

2025 Faculty Bibliography

Background/Objectives: Creatine monohydrate supplementation has gained popularity in the fitness industry due to its ability to enhance athletic performance and has sparked curiosity about other possible effects of the supplement. The purpose of this study was to examine the effect of creatine supplementation on spatial working memory, body weight, and food intake in male and female rats.

Methods: Experimental rats, six male and six female, were administered creatine while six male and six female rats served as controls. The Morris water maze (MWM) was employed to assess spatial working memory. Body weight and food intake were measured daily.

Results: Neither …

Functional Trait Responses Of Invasive Ludwigia Species Tocontrasting Hydrological Conditions, Rebecca E. Drenovsky, Rebecca Reicholf, Caryn Futrell, Blanca Gallego‐Tévar, Brenda J. Grewell

2025 Faculty Bibliography

Premise: Hydrological regime influences wetland plant species distribution andperformance. Global warming and extreme weather events are magnifying floodingpatterns, and understanding how invasive taxa respond across life stages (establish-ment vs. established phase) is important for predicting and managing their coloni-zation and spread. Our objective was to measure flood trait responses at contrastinglife stages in closely related congeners (Ludwigia peploides, diploid; L. hexapetala,decaploid; Onagraceae) differing in their invasiveness in the field.

Methods: In the field, we assessed phenological responses to seasonal hydrological changes,and in mesocosms, we assessed flood stress responses of establishing shoot fragments underdeep‐flooded, shallow‐flooded, and gradual drawdown hydrological …

Spatial Variation In Sexual Size Dimorphism And Mating Associations In The Color Polymorphic Eastern Red-Backed Salamander (Plethodon Cinereus), Maggie M. Hantak, Olivia L. Brooks, Kyle M. Brooks, Carl D. Anthony, Cari-Ann M. Hickerson, Kelly A. Williams, Shawn R. Kuchta

2025 Faculty Bibliography

Sexual selection due to mate preference for certain traits can maintain phenotypic diversity within populations and species. In taxa with discrete phenotypes, such as color polymorphic species, assortative mating may lead to disruptive selection and sympatric divergence, yet how such interactions vary over species' ranges remains poorly understood. To address this shortcoming, we examined spatial patterns of sexual size dimorphism and presumptive male–female mating pairs based on body size and coloration in the color polymorphic Eastern Red-backed Salamander, Plethodon cinereus. This species exhibits two common color morphs, striped and unstriped, that also differ in other elements of their biology, including …

Functional Trait Responses Of Emergent And Free-Floating Alternanthera Philoxeroides To Increasing Salinity With Sea Level Rise: Stress Tolerance, Avoidance, And Escape Strategies, Brenda J. Grewell, Blanca Gallego-Tevar, Jesus M. Castillo, Caryn J. Futrell, Rebecca E. Drenovsky, Nathan E. Harms, Paul D. Pratt

2025 Faculty Bibliography

ea level rise is having major impacts on estuaries due to salinity intrusion. These changes in stress profiles have ripple effects in ecosystems, including altering the invasibility of these wetlands depending on the salt tolerance of the invading species. Alternanthera philoxeroides Mart. (Griseb.) (alligator weed), native to South America and long recognized as one of the world’s worst freshwater aquatic weeds, recently invaded tidal wetlands in California’s San Francisco Bay–Delta Estuary. Generally considered a freshwater-limited glycophyte, observations suggested this invasive macrophyte may have some degree of salinity tolerance, though its degree of tolerance and capacity to spread with increased salinity …

Use Of Light Traps To Assess The Taxonomy And Seasonality Of Early Life Stages Of Fishes Recruiting To Upper Matagorda Bay In Texas, Polly Hajovsky, Joel Anderson, Damon Williford

Gulf and Caribbean Research

Detecting the ingress of larval and early juvenile fishes into estuaries is crucial for understanding the early life stages and population dynamics of species—specific recruitment seasonality. However, monitoring these early life stages presents challenges due to their small size, seasonal variability, spatial patchiness, and their use of structurally complex habitats. Although plankton nets have been widely used to sample larval fishes, light traps have been found to have more flexibility, durability, and cost—effective. This study aimed to assess the effectiveness of light traps for sampling larval and early juvenile fishes in a Texas estuary. The objectives of this study were …

Influence Of Multi-Species Data On Gene-Disease Associations In Substance Use Disorder Using Random Walk With Restart Models, Erich J. Baker, Everest U. Castaneda, Sharon Moore, Jason A. Bubier, Stephen K. Grady, Michael A. Langston, Elissa J. Chessler

Funded Scholarship

A major challenge lies in discovering, emphasizing, and characterizing human gene-disease and gene-gene associations. The limitations of data on the role of human gene products in substance use disorder (SUD) makes it challenging to transition from genetic associations to actionable insights. The integration of data from multiple diverse sources, including information-dense studies in model organisms, has the potential to address this gap. We demonstrate a modified performance of the Random Walk with Restart algorithm when multi-species data is integrated in the heterogeneous network within the context of SUD. Additionally, our approach distinguishes among disparate pathways derived from the Kyoto Encyclopedia …

Variation In Maternal Alkaloid Provisioning And Its Effects On Antimicrobial Defense In Tadpoles Of The Poison Frog Oophaga Pumilio, Erica Berent

Masters Theses

No abstract provided.

Genetic Influences On Individual Variability In Western Lowland Gorilla (Gorilla Gorilla Gorilla) Social Behavior, Hadley Mueller-Hill

Master's Theses

While primates are considered highly social animals, the evolutionary origins and mechanisms underlying their social behaviors remain unclear. Not only do they exhibit an extensive range of behaviors, but individuals within the same species can also vary widely in their social interactions. Genetics play a significant role in shaping these individual variations in behavior; multiple genetic variants have been associated with differences in social behavior in mammals. Examples of these include MAOA and OXTR genes, which influence the expression of behaviors associated with antisocial and prosocial temperaments. Genetic polymorphisms affect primate interactions, impacting an individual’s ability to maintain its status …

Chironomids Shed Light On Organic Matter Dynamics In Macroinvertebrate Communities In Prairie Pothole Lakes In West-Central Minnesota, Usa, Tracey M. Anderson, Sarah G. Winikoff, Michael L. Sorensen, Melissa L. Rudeen

Biology Publications

The Prairie Pothole Region (PPR) in North America is characterized by a high density of wetlands that can range from temporary habitats to small lakes. Much of the PPR has been converted to agriculture resulting in outright habitat loss, eutrophication, sedimentation, introduction of agrochemicals, and the introduction of invasive plants and animals. We compared two prairie pothole lakes, Cottonwood Lake and Page Lake, to assess the functional roles and trophic structure of the macroinvertebrate communities in this highly altered landscape. We collected macroinvertebrate samples from littoral and profundal regions of each lake with an Ekman grab sampler in winters of …

Navigating Wastewater: Minnesota Mining Wastewater Permit Challenges And Evolving Compliance Standards, Madelaine Adamich

Journal of Earth and Life Science

February of 2021 marked the beginning of Minnesota clearly establishing that groundwater qualifies as a Class 1 water in a legal battle involving United States Steel, the Minnesota Pollution Control Agency, WaterLegacy, Fond du Lac Band of Lake Superior Chippewa, the Minnesota Court of Appeals, and eventually the Minnesota Supreme Court (MNSC). Minnesota has a water classification system, as required by the federal Clean Water Act, with 7 classes of use. Class 1 waters are waters used for domestic consumption (MPCA 4, n.d.). According to Minnesota Statute § 7050.0220, the acceptable level for sulfate is 250 mg/L in Class 1 …

Aquatic Invertebrate Populations In Roadside Wetlands In Relation To Water Characteristics, Ellen P. Isakson

Journal of Earth and Life Science

The continual habitat destruction and draining of wetland systems makes the need to understand the ecology of roadside wetlands all the more necessary. Roadside wetlands provide valuable habitat to countless aquatic invertebrates, which can provide insight into the health of the wetland system due to their diversity. The objective of this study was to analyze the populations of aquatic invertebrates in roadside wetlands in relation to water characteristics such as pH, salinity, conductivity, water depth and temperature, and dissolved oxygen. This was done by collecting samples of invertebrate populations from roadside wetlands, in addition to data on water quality characteristics …

Introductory Biology Ii Lab Manual, Melissa A. Storm

OER Collection

Explore the diversity of life on the planet Earth with a focus on organisms found in the Southeast of the United States, examine the evolutionary relationships between organisms and the ways in which scientists are currently expanding their understanding of those relationships every day through this BIO 102 Lab Manual

How to use this book: 

Each unit of this book represents the information you will learn during a week of lab class. Within each unit you will find types of information to help you learn the content.

At the beginning of each unit, you will find lists of reinforced skills …