Digital Commons Network^™

Machine Learning And Uass For Managing Autumn Olive (Elaeagnus Umbellata) On Reclaimed Surface Mines, Sean Michael Keane

Graduate Theses, Dissertations, and Problem Reports (ETD)

This research introduces an innovative approach for managing autumn olive (Elaeagnus umbellata) on reclaimed surface mines through the integration of machine learning algorithms and unmanned aerial systems. The proliferation of autumn olive presents significant ecological challenges on disturbed landscapes, necessitating more efficient detection and control methods. This study evaluated Random Forest classification and deep learning approaches using the U-Net architecture for identifying autumn olive across four phenological stages using high-resolution imagery. The RGB U-Net model achieved F1-scores of 0.927, 0.912, and 0.871 for autumn olive detection during peak, late, and senescence stages respectively, outperforming both multispectral and vegetation …

Firelog: An Open-Source, Low-Cost System For Temperature Logging During Wildland Fires With High Spatial And Temporal Resolution, Nipuna Chamara, Yufeng Ge, Sabrina E. Russo

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Measuring flame, air, and soil temperatures during wildland fires, including wildfires and controlled burns in land management contexts, is crucial for research and applications in fire ecology, safety, and management in a wide array of ecosystems, from grasslands to forests. However, open-source and commercial systems are needed for measuring and logging flame and air temperatures that are user-friendly, economical, modular, and customizable. This paper details the design, development, and validation of the FireLog system. Laboratory validation experiments demonstrated high measurement accuracy, with a minimum coefficient of determination (R2) of 0.98 and the highest observed root mean square error (RMSE) of …

Lichen It: Optimizing Post-Fire Caribou Lichen Transplantation And Assessment, Elise Brown-Dussault

Theses and Dissertations (Comprehensive)

Caribou lichen species are common in mid- to late-seral boreal forests, serving as an important winter diet staple for boreal woodland caribou. However, as climate change causes boreal wildfires to increase in size, severity, and frequency, available tracts of mature forest are decreasing, diminishing the extent of mature caribou lichen stands. Caribou lichens reproduce vegetatively, so bigger and more severe fires could exacerbate their dispersal limitations, potentially extending the timeline for caribou lichen stand recovery beyond 80 years. Trials have shown that “transplanting” caribou lichen fragments into disturbed areas can lead to the establishment of caribou lichen mats; as such, …

Carbon Dynamics Across The Mangrove-Tidal Flat Ecotone In A Tropical Seascape, E. S. Yando, I. J.B. Alemu, L. Kiah Eng, T. M. Sloey, M. Van Breugel, Bhatia N. Friess

Biological Sciences Faculty Publications

Mangroves and other blue carbon ecosystems are important for climate through the storage and sequestration of carbon. Most research estimates carbon dynamics by subsampling central portions of the ecosystem and are then upscales using habitat maps to patch, landscape, or regional levels. However, heterogeneity is rarely accounted for - particularly at edges. Further, adjacent tidal flat ecosystems have only recently been considered for carbon storage, but may be undervalued if areas where they transition with vegetated systems are not accounted for. To address the lack of information at coastal ecotones, we examined both soil carbon storage and carbon dioxide flux …

Assessing Ecological And Food Web Responses To Small-Scale Stream Restorations In Urban And Agricultural Streams, Sydney Mcandrews

Masters Theses

Urban and agricultural streams across the Midwestern United States are vulnerable to elevated pollution, eutrophication, habitat simplification, and losses of sensitive species. Instream habitat restoration is increasingly used to mitigate the impacts of rapid land-use change. This study synthesizes habitat and biological responses from a 2020 urban stream restoration in the Saline Branch (Urbana, Illinois) and evaluates food web responses from both the Saline Branch and a 2010 restoration in Kickapoo Creek (Charleston, Illinois), an agricultural stream. In the Saline Branch, four years of fish and three years of habitat and macroinvertebrate pre-restoration surveys were compared to three years of …

Binoculars To Bytes: Development And Field Validation Of An Ai-Driven System For Avian Monitoring, Christian J. Dupree

Graduate Student Theses, Dissertations, & Professional Papers

Autonomous camera-trap arrays coupled with artificial-intelligence (AI) vision can lift bird monitoring beyond the spatial, temporal, and labor limits of traditional field surveys. We present Binoculars to Bytes (B2B), an open-source pipeline that turns 180–360° time-lapse imagery into analysis-ready avian data. At Freezout Lake Wildlife Management Area (Montana, USA) the system ran four-hour morning deployments during spring and fall migrations (2023–2024). A YOLO-NAS detector, incrementally refined with a “Specialized Localized Iterative Model” workflow, quadrupled local accuracy and, after confidence-based species-binning, cut false-positive rates in half. Daily AI species lists were benchmarked against contemporaneous eBird citizen-science checklists and recovered ≥ …

Environmental Exposure To Metals In Children And Their Effects On Autism Spectrum Disorder, Oludesola Ogunesan

All ETDs from UAB

ABSTRACT As scientific understanding of environmental determinants of health advances, growing attention has turned to the role of toxic metal exposures in exacerbating neurodevelopmental outcomes, particularly in vulnerable populations such as children with autism spectrum disorder (ASD). This dissertation investigates the intersection of environmental metal exposure, biomonitoring innovation, and social factors shaping ASD severity in Alabama. Using a multidisciplinary framework, four interrelated studies explore biological, environmental, and participatory dimensions of ASD research and public health. The first study evaluates the utility of Volumetric Absorptive Microsampling (VAMS) for measuring exposure to cadmium (Cd), chromium (Cr), lead (Pb), manganese (Mn), and mercury …

Support Needs Of Agrarian Women To Build Household Livelihood Resilience: A Case Study Of The Mekong River Delta, Tran Thi Ngoc Tran

Dissertations

Problem

Rural livelihood faces significant challenges due to the increasing frequency and severity of climate change impacts. However, the development of women’s livelihood resilience remains constrained by gender-blind policies, limited sex-disaggregated data, and a lack of integration of gender-specific needs and priorities in resilience-building interventions. This study aims to address these critical gaps. This study aims at exploring the perceived support needs of rural agrarian women in building household livelihood resilience to climate change. Specifically, it seeks to (1) understand how household livelihood resilience is perceived by rural agrarian women, and (2) identify the support they require to effectively adapt …

They Forgot We Were Seeds: Critical Counter-Narratives Supporting Culturally Informed Community Seed Work, Florentina Rodriguez

Antioch University Dissertations & Theses

This Professional Innovation dissertation utilizes Critical Counter-Narrative both as research methodology to generate narrative reflections and as praxis for liberatory transformation. Through research vignettes adapted from the author’s experience with critical collaborative autoethnographic seed work, this study produced critical counter-narratives aimed at addressing inequities in small-scale seed systems. These counter-narratives were incorporated into curriculum materials synthesized as an educational toolkit for a professional research

sister-project: the new Culturally Informed Community Seed Pledge and Code of Ethics (CICSP/COE). This project seeks to address disparity and extractive practices; outline relational pathways for reciprocity and respecting communities of origin; and provide evaluation metrics …

Assessing Arbuscular Mycorrhizal Fungal Community Composition And Diversity Across A Land-Use Gradient In Eastern Washington Prairies, Katherine I. Cole

EWU Masters Thesis Collection

Arbuscular mycorrhizal fungi (AMF) are key to healthy, functioning terrestrial ecosystems worldwide. Associating with over 80% of all extant land plants, they play a pivotal role in nutrient cycling, and contribute to overall plant health. Given their significance to terrestrial ecosystems, AMF have a crucial role to play in the successful restoration of Eastern Washington’s native prairies. However, AMF community composition is significantly altered by the commercial agricultural practices used extensively in this region for over 100 years. The Eastern Washington University (EWU) Prairie Restoration Project aims to restore ~120 acres of farmland to native prairie. This research provides insight …

Neural And Computational Approach To Understanding Environmental Modulation Of Behavioral Identity In Zebrafish, John W. Hageter

Graduate Theses, Dissertations, and Problem Reports (ETD)

Organisms rely on behavior for survival. Animals engage in behaviors that allow for feeding, mating, exploring and navigating their environment among others. Necessary for these behaviors to develop are the environmental factors and underlying circuitry which make behavior possible. Specifically, how the environment guides underlying neural circuitry to develop unique facets or phenotypes of a larger behavior are key to understanding why unique behaviors exist. In this thesis, I build foundational evidence for determining these mechanisms through the use of the zebrafish local search behavior. This is a behavior that zebrafish employ following the loss of environmental illumination where they …

Microbial And Plant Biodiversity In Appalachian Agroecosystems And Their Implications For Soil Health, Kinsey Reed Close

Graduate Theses, Dissertations, and Problem Reports (ETD)

The sustainability of agricultural landscapes depends on understanding the complex interactions between plants, soil, and microbes. In Appalachia, a region shaped by complex terrain and long histories of human and ecological interaction, small family farms produce hay, livestock, and row crops. These agroecosystems, though often treated as “artificial” by many ecologists, have the potential to support both food production and biodiversity conservation if managed with an understanding of ecological complexity. This dissertation examines how plant and microbial diversity interact with soil and management to influence nutrient cycling, soil health, and long-term resilience in Appalachian agricultural systems. A literature review revealed …

Effects Of Environmental And Anthropogenic Gradients On Fish Beta Diversity In Central Appalachian Streams, Alanna Kaylee Lowther Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Understanding the environmental and spatial drivers of community composition is essential for conserving freshwater biodiversity. We examined how environmental gradients, land cover, and spatial structure influence fish beta diversity in wadeable streams across West Virginia, USA. We quantified total beta diversity and partitioned it into species replacement and richness difference components and used local contributions to beta diversity (LCBD) to identify compositionally unique sites. Community–environment relationships were evaluated with distance-based redundancy analysis (dbRDA), and a beta regression GLMM was used to test how elevation, slope, land cover, and stream order (factor) predicted LCBD while accounting for spatial structure (dbMEMs) and …

Using Advanced Machine Learning To Evaluate The Spatial And Temporal Patterns Of Human–Bear Interactions In Maryland, Usa, Katherine A. Kurth, Jonathan K. Trudeau

Human–Wildlife Interactions

American black bears (Ursus americanus) are highly adaptable to human-dominated areas, which can lead to interactions with humans. Managing these interactions is a priority for many wildlife agencies in North America. Climate-induced shortages in natural food can exacerbate human–bear interactions, as bears are driven to seek alternative food sources in human-dominated areas. However, few studies have investigated the impact of climate or weather on the frequency and severity of human–bear interactions. In Maryland, USA, no research has examined the anthropogenic or environmental factors contributing to human–bear interactions, even though reported interactions have consistently increased since the 1990s. Our …

Pygoscelis Penguins Prefer Different Oceanographic And Terrestrial Habitats During The Austral Summer, Katherine L. Gallagher, Rachel Herman, Katherine Walton, Michael S. Dinniman, Heather J. Lynch

OES Faculty Publications

Pygoscelis penguins interact with both terrestrial and marine environments, especially during the austral summer when they raise their chicks. Accessible ice-free ground spaces serve as locations for penguins to build colonies and successfully raise chicks while the surrounding marine environment serves as the foraging grounds for adult birds. Penguins must be able to navigate through the waters around their colonies to forage for Antarctic krill (Euphausia superba), their primary prey during the austral summer. Krill, whose distributions are driven partially by the surrounding physics and partially by their behaviors, must also be plentiful in the waters near the …

Long-Term Ichthyoplankton Monitoring Of The Moon River (Savannah, Ga) With A Focus On Climate Change, Bradley Cayson

College of Graduate Studies: Theses & Dissertations

The presence of healthy fish populations is a cornerstone of many important ecological mechanisms. These populations are supported by the recruitment of ichthyoplankton, or the egg and larval stages of fishes, as the primary determinant of population growth. Increases in average global water temperatures can alter the composition of fish communities and thus the offspring found in planktonic stages. I compared a large data set of ichthyoplankton surveys completed from 2009-2011 to a replicated six-month sampling period from May – November of 2024. Collection was conducted weekly to biweekly during night flood tides using a fixed suspension ichthyoplankton net (1mm …

Diversifying Ecology Education For Everyone Through More Inclusive, Interdisciplinary, And Accessible Teaching, Loren B. Byrne, Emily S. J. Rauschert, Vikki L. Rodgers, Gillian Bowser, Et Al.

Arts & Sciences Faculty Publications

Educating more students about ecology and its beneficial applications to societal issues is urgent yet challenging. To address this challenge, diversifying ecology education is a key way to make ecology more inclusive, accessible, and interdisciplinary for more people than ever. Advancing this goal requires ecology educators to develop a more expansive view of (1) how to engage more diverse undergraduate students in ecology courses, especially those from historically underrepresented groups and non-majors, (2) the interdisciplinarity of content in those courses, and (3) the learner-centered pedagogies used to engage students. We suggest ways that ecologists can advance “ecology education for everyone” …

Spatial Analysis Of American Chestnut (Castanea Dentata) Distribution And Ecology In Kentucky’S Federal Lands, Jacob Raymond Pease

Murray State Theses and Dissertations

Anthropogenic factors have been the cause of the decline of tree species across the globe. From unsustainable logging and development to disease and improper management, threats to forests have taken their toll. The American chestnut (Castanea dentata) was once an integral basal tree species in Appalachian forests, but chestnut blight drove the species to functional extinction by the mid-1900s. The recent creation of genetically modified chestnuts gives hope for future restoration of the species throughout its historical range. Despite blight resistance, effective restoration will require optimal site selection for finding and planting chestnuts, which will maximize limited resources. …

Wildlife Distribution Mapping And Analysis In Gorongosa National Park, Mozambique, Using Site And Satellite Imagery Data, Pinho Joaquim Munhequeira Mr

Murray State Theses and Dissertations

One of Mozambique's most important conservation sites, Gorongosa National Park has seen critical ecological changes over the past several decades resulting from climate variability, habitat loss, and political instability. This research integrates Geographic Information Systems (GIS) and remote sensing to examine the relationship between vegetation dynamics and wildlife population, and distribution. The main goals of this study are to evaluate the spatial distribution of particular wildlife species: buffalo (Syncerus caffer), elephant (Loxodonta africana), hippopotamus (Hippopotamus amphibius), and zebra (Equus quagga), and determine the impact of vegetation density and land cover on their …

Dictyostelids: The Second Major Group Of Slime Molds, P. Liu, Z.J. Zhang, J.H. Ge, Y. Zou, Z. Li, S. Li, Y. Li, S.L. Stephenson

Biological Sciences Faculty Publications and Presentations

The dictyostelids (also called cellular slime molds or social amoebae) are among the more abundant and widespread groups of microorganisms in terrestrial ecosystems. Despite this fact, they are totally unknown to most people, who sometimes confuse the dictyostelids with myxomycetes (or plasmodial slime molds). The first dictyostelid (Dictyostelium mucoroides) was described by the German Oskar Brefeld in 1869. More than 180 species are now known, and these organisms have been recorded from the high arctic to the subantarctic. The primary microhabitat for dictyostelids is the soil/humus layer on a forest floor, but they also occur in a number of other …

Impact Of Urban Development On Uv Exposure: A Clustering And Machine Learning Assessment, Taufik Roni Sahroni Mr., Verdi Yasin, Lulut Alfaris, Reza Ariefka, Ruben Cornelius Siagian, Mohammad Alfin Karim, Nana Rahdiana, Ade Suhara

Journal of Environmental Science and Sustainable Development

The relocation of Indonesia's capital city is anticipated to promote inclusive economic growth while embracing cultural diversity. However, this transition may affect ultraviolet (UV) radiation exposure patterns. The study investigated variations in UV exposure in the IKN region, focusing on urban development factors such as land use and population density that affect public health, sun protection, and skin cancer prevention. The research hypothesized that UV radiation is significantly correlated with these factors. UV Index data from 2010-2023, a hierarchical clustering method, identifies complex data patterns without determining the number of clusters. XGBoost, a machine learning model, was used for handling …

Biphasic Models Improved S-Metolachlor Dissipation Endpoint Predictions, K. Badou-Jeremie Kouame, Mary Savin, Cammy Willett, Thomas R. Butts, Erin Grantz, Matthew Bertucci, Samantha E. Robinson, Rodrigo Werle, Nilda Roma-Burgos

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Accurate predictions of herbicide dissipation endpoints are essential for making environmental management decisions, estimating the duration of weed control, and deciding crop replant and rotation options. The performance of the single first-order (SFO), first-order multiple-compartment (FOMC), bi-exponential (BEXP), first-order double-exponential decay (FODED), and first-order two-compartment (FOTC) was evaluated to describe S-metolachlor dissipation. Results showed that the BEXP and FOTC were not appropriate. The FODED was ranked as the top model with the lowest Akaike's information criterion (AICc) value among the other three candidate models and was followed by the FOMC model. The SFO displayed the largest root mean square …

Studies Of Media To Maximize The Expression Of Bacterial Metalloprotease Genes As Potential Therapeutics For Human Alzheimer’S Disease, Uday Kiran Chigurupati

Honors Capstones

This study investigates the potential of bacterial metalloprotease genes as therapeutic agents for Alzheimer's Disease (AD). The research focuses on Pseudomonas 20ei1 (P. 20ei1), a bacterial species isolated from lagoon water, which contains pitrilysin genes that share similarities with human insulysin. Six pqqL-related genes were identified in P. 20ei1 for this study. The research methodology involved bioinformatic studies, bacterial cell culture in various media, RNA extraction, purification, and cDNA synthesis. Quantitative PCR analysis was performed to analyze gene expression levels in different cDNA samples. The bacteria grown in the medium with insoluble phosphate has shown higher expression of selected genes …

Analyzing Head Morphology Trends With Increasing Population Density In A Jamaican Lizard Species, Lillian Durand

2024 Fall Honors Capstone Projects - Archive

Anolis lizards are model organisms for studying natural selection and evolutionary processes. One trait that is hypothesized to be advantageous for males is head size, as larger heads lead to stronger bite forces and increased likelihood in outcompeting other males for mates. To better understand how linked head size and intraspecific competition are, the head morphology of male A. lineatopus was analyzed among Jamaican populations with varying levels of population density. Population densities were determined using standardized plot surveys and mark resight models. Head dimensions and body condition for individual lizards were measured at each site. My study found that …

Condition And Management Futures In A Quaking Aspen Recreation Area. Final Report To Snyderville Basin Special Recreation District, Paul C. Rogers, Georgie Corkery, Anna B. Miller

Aspen Bibliography

In partnership with Snyderville Basin Special Recreation District (SBSRD), we undertook a study of ecological conditions and user preferences within a quaking aspen recreational destination forest. The location, in two sections know as Run-A-Muk and Right Turn Sage (RAM/RTS), has experienced some forest die-off in the principally aspen dominated forest dissected by ski, bike, and hiking trails. Graduate student Georgie Corkery led the study and successfully completed a Master's degree, in addition to providing needed information to SBSRD regarding the status, uses, and preferred actions at this facility. Key outcomes regarding aspen conditions include assigning causal factors—ungulate browsing and elevated …

Lateral Dispersal Of Adult Trichoptera: Flight Distance And Traveling Pattern, Peilin Tan

All Theses

Trichoptera species (caddisfly) are usually used as bio-indictors for surface water quality due to their sensitivity to environmental changes, and if assessing water quality with light-trapped adults, knowing their travelling patterns will improve the accuracy of such assessments. To investigate how far a caddisfly will migrate from their emerging stream, three streams in South Carolina with different widths (Wildcat Creek 1.2 m, Brasstown Creek 11.2 m and Chattooga River 26.95 m) were selected for this study with light traps placed at three distances (0 m, 50 m, 100 m) from the streams. How long and when? Both species richness and …

Heat Acclimated Algae Improves Heat Tolerance And Longevity In Daphnia, Ashit Dutta

Electronic Theses and Dissertations

Xenohormesis suggests that consuming stressed food provides physiological adaptation to the consumer for similar stresses. To evaluate this, Daphnia magna was provided with heat-stressed Nannochloropsis limnetica grown at 25℃ whereas the control group was provided Nannochloropsis limnetica grown at 12℃. In the heat tolerance experiment, Daphnia kept at 28℃ and 20℃ while consuming 25℃ algae had significantly higher heat tolerance compared to the control. Additionally, in stressed conditions, Daphnia consuming 25℃-grown food had significantly higher lifespan compared to the control. Next, Daphnia consuming 25℃-grown algae had significantly higher levels of antioxidants which could explain the lifespan extension. Finally, in fatty …

Structure Modifications And Alternative Monitoring Designs Of Wildlife Road Mitigation Structures, Madison T. Nadler

Theses and Dissertations

Wildlife mitigation structures are designed to keep animals off roadways while providing them safe passage to the other side and not impeding traffic flow. Camera traps are commonly used to assess the success of these mitigation structures, but there are downfalls to both the methods and structures. Alternative mitigation structure designs are needed to better prevent wildlife from accessing roadways in areas where they should be deterred. Additionally, traditional camera trapping methods do not accurately capture the full wildlife communities that may be utilizing these structures and other survey methods are needed, specifically aimed at small mammals, amphibians, and reptiles. …

Elevation And Population Size Effects On The Survival Of Drosera Rotundifolia, Jessica Williams

Electronic Theses and Dissertations

Carnivorous plants face significant conservation challenges due to habitat destruction, climate change, and illegal harvesting. This study explores how elevation and population size influence key-life history traits of D. rotundifolia, such as flowering phenology, prey capture efficiency, seed production, and germination rates. Higher elevations and larger populations are associated with extended flowering durations and increased prey capture. However, seed production and germination rates show complex patterns that are likely influenced by genetic diversity, resource availability, or environmental conditions. These insights inform targeted conservation strategies, emphasizing habitat preservation, enhancing prey availability, and maintaining genetic diversity. Public education and community engagement …

Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott

Research outputs 2022 to 2026

Anthropogenic activities are causing detrimental changes to coastal plants– namely seagrass, mangrove, and tidal marshes. Looking beyond recent times to past vegetation dynamics is critical to assess the response and resilience of an environment to change. Here, we develop a high-resolution multi-proxy approach, providing a new evidence base to decipher long-term change in coastal plant communities. Combining targeted environmental DNA analysis with chemical analysis of soils, we reconstructed 4,000 years of change at a temperate wetland on Torrens Island South Australia and identified an ecosystem shift that occurred ~ 1000 years ago. What was once a subtidal seagrass system shifted …