Digital Commons Network^™

Pluredecadal Patterns Of The Harmful Algal Blooms In The Highly Dynamic Marine Ecosystem Of Alexandria (Egypt): A Review, Samia K. Mikhail, Wagdy Labib

Blue Economy

The long-term study of phytoplankton variability in the coastal waters of Alexandria encounters significant challenges due to several factors such as inconsistency in sampling efforts conducted across various spatial and temporal scales, limitations of short-term monitoring methods, rapid urbanization and economic expansion, and their diverse eco-environmental impacts. The article analyzes a quantitative and qualitative dataset on algal bloom variabilities in Alexandria marine ecosystem from 1992 to 2023, highlighting changes in bloom patterns and trends such as annual cycles, short-term trends, rapid turnover rates of bloom structures, recurrent blooms of various classes, escalation in the frequency and magnitude, unusual episodic events, …

Diet, Bioaccumulation Of Heavy Metals, And Population Genomics Of Narrow-Barred Spanish Mackerel (Scomberomorus Commerson) From The Arabian Gulf, Shaima Malik

Thesis/ Dissertation Defenses

Marine organisms are integral part of marine ecosystems, forming complex feeding interactions. Large predatory fish are especially important because they often govern food web structures through top-down influences. The narrow-barred Spanish mackerel (Scomberomorus commerson) is an ecologically and economically important fish species that feeds on small forage fish. The current study focuses on three aspects of the narrow-barred Spanish mackerel (diet, bioaccumulation of heavy metals and population genomics). This species is considered near-threatened, as its population has been declining due to anthropogenic stressors. The Arabian Gulf experiences continuous natural stressors, which are further exacerbated by human activities, impacting the marine …

Creatine Supplementation Is Safe, Beneficial Throughout The Lifespan, And Should Not Be Restricted, Richard Kreider, Andrew Jagim, Jose Antonio, Douglas Kalman, Chad Kerksick, Jeffrey R. Stout, Robert Wildman, Rick Collins, Diego A. Bonilla

Faculty Scholarship

As researchers investigating creatine supplementation, we have become increasingly concerned about reports that government agencies are attempting to restrict the sale of dietary supplements, including dietary supplements containing creatine, to children and adolescents. Creatine is a naturally occurring compound found in every cell in the human body that plays a critical role in cellular metabolism. The daily turnover of creatine is about 2–4 grams/day, depending on muscle mass and physical activity levels (1, 2). About half of the daily need for creatine is synthesized in the body from amino acids (arginine, glycine, methionine) and stored as free creatine or phosphocreatine …

Ecological Studies Of Wolves On Isle Royale, Sarah R. Hoy, John A. Vucetich, Rolf O. Peterson

Ecological Studies of Wolves on Isle Royale

Annual Report 2024-2025

Aerial Phytomass And Carbon Sequestrated By The Kitshanga Forest Massif In The Wamba Valley In Dr-Congo, Mayanu Pemba, Ntalakwa Makolo, Kidikwadi Tango, Lubini Ayingweu

Journal of Bioresource Management

Aerial phytomass and carbon sequestrated by the Kitshanga forest massif in the Wamba valley in DR-Congo. The general objective was to evaluate the aerial phytomass and the carbon contained in the ligneous tissues of the trees. Specifically, the research aims to: (i) inventory all individuals in the Kitshanga gallery forest; (ii) identify the species in the study area; (iii) determine the floristic composition and density of the stand studied and (iv) evaluate the phytomass and the carbon sequestered by this vegetation. Inventory devices full on 1 hectare subdivided by 400 m² to obtain 25 plots which constitute the size of …

Cyanobacteria And Algae From Chýnov And Koněprusy Caves (Czech Republic), Michaela Wipplingerová, Jan Pokorný, Jan Kaštovský

International Journal of Speleology

Algae and cyanobacteria have been studied in two so far phycologically unexplored show caves (Chýnov and Koněprusy) in the Czech Republic. Taxa were identified morphologically using cultivation and subsequent light microscopy, while problematic cyanobacterial species were verified by sequencing the genes for 16S rRNA and 16S–23S internal transcribed spacer. A total of 13 cyanobacterial taxa were found, two Bacillariophyceae, three Xanthophyceae, four Chlorophyceae, six Trebouxiophyceae, 11 Streptophyta, and three Euglenida; many of these species were found for the first time in the caves. The darker parts of the caves were dominated by cyanobacteria, and green algae were found predominantly right …

Influence Of Inselbergs On Bat Diversity In Afrotropical Ecosystems, Amanda Lee Grunwald

Dissertations and Theses

Humans are altering biological communities on local to global scales, driving profound changes in biodiversity and ecosystem functioning. However, significant gaps and biases in biodiversity data hinder our understanding of ecosystem interactions, making it challenging to develop effective, data-driven policies to protect remaining biodiversity. Bats, the second most species-rich groups of mammals, have a global distribution, and perform a broad array of vital ecosystem functions. Their diversity peaks in the tropics, where they often constitute more than 50% of mammal species diversity. The Afrotropics host substantial bat diversity, yet have historically been perceived as having lower species richness compared to …

Thermophilic Microbiota Of Fifth Water Hot Springs: A Genomic Perspective, Ethan Powers, Zack Galbraith, Trever Thurgood

Annual Research Symposium

Geothermal hot springs provide unique microbial habitats characterized by extreme temperatures, variable pH, and diverse geochemical conditions. This study investigates the microbial diversity of three hot spring locations in Diamond Fork Canyon, Utah—Diamond Fork Warm Springs, Fifth Water Hot Springs, and Monk’s Hollow Trailhead—using Oxford Nanopore MinION sequencing of the 16S rRNA gene. Samples were collected in triplicate and analyzed to identify the bacterial composition, with a focus on potential opportunistic pathogens. Our results revealed a diverse microbial community, including members of Pseudomonas, Comamonas, Helicobacter, and Flavobacterium, some of which are known for biofilm formation, antibiotic …

Determining The Physiological And Behavioral Tolerance To Hypoxia In Two Species Of Rockfish (Sebastes Spp.), Makenna Chan

Theses

In the eastern North Pacific, the oxygen minimum zone naturally shoals seasonally and impacts demersal fish habitat along the continental margins and on offshore seamounts. This hypoxic layer has been shoaling in recent decades, likely affecting the habitat and distribution of commercially-important fish species such as rockfishes (genus Sebastes). Respirometry and shuttle box behavioral experiments were used to determine the hypoxia sensitivities of two rockfish species with contrasting movement patterns and habitat use: cowcod (Sebastes levis) and bocaccio (Sebastes paucispinis). Although both species inhabit similar deep-water, rocky-reef habitat, they have different lifestyles, in which cowcod …

Development And Validation Of Rapid Edna Detection Method For Yellow Mud Turtle, Kinosternon Flavescens: A Field Study In South Texas, Usa, Sakib Tahmid Rishan, Richard Kline, Md Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

The conservation of freshwater turtle species depends on precise and effective monitoring techniques. Environmental DNA (eDNA) analysis is a potential method for identifying cryptic and elusive turtle species in aquatic ecosystems. eDNA analysis can help to identify key regions for conservation efforts and monitor changes in population levels over time. This study aims to evaluate the effectiveness of a rapid eDNA detection method for the yellow mud turtle (Kinosternon flavescens, an indicator species that is endangered in some states in the USA), which inhabits local oxbow lakes (e.g., resacas) in Cameron County, South Texas. A species-specific nested PCR …

Behavioral Ecology And Physiology Of Spotted Turtles (Clemmys Guttata) In A Fragmented And Polluted Landscape, Jessica Rojas Lindberg

Master's Theses

Turtles are one of the most threatened groups of animals across the globe. This is especially true for freshwater turtles that rely on multiple habitats to fulfill their life history requirements. Wetlands are a crucial habitat type for many freshwater turtle species, and this ecosystem has been susceptible to conversion, fragmentation, and pollution. In turn, these hazards to wetland habitats threaten already declining freshwater turtle populations. The spotted turtle (Clemmys guttata) is a species of freshwater turtle that is particularly at-risk due to life history traits as well as habitat fragmentation and pollution. This study aims to investigate the effects …

Changes In Vertical Stratification Of Neotropical Nymphalid Butterflies At Forest Edges Are Not Directly Caused By Light And Temperature Conditions, Brian K. Oye, Ryan I. Hill

Pacific Faculty Work

Habitat fragmentation and land use changes threaten neotropical habitats and alter patterns of diversity at forest edges. Like other arthropod assemblages, neotropical fruit-feeding butterfly communities show strong vertical stratification within forests, with some recent work showing its potential role in speciation. At forest edges, species considered to be forest canopy specialists have been observed descending to the forest understory, with the similarity in light conditions between the canopy and understory strata at edges hypothesized to be responsible for this phenomenon. We conducted a study using standardized sampling to document and quantify this edge effect, characterize edge and forest strata, and …

The Continuing Search For A Better Mouse Trap: Two Tests Of A Practical, Low-Cost Camera Trap For Detecting And Observing Small Mammals, Raymond D. Dueser, John H. Porter, Nancy D. Moncrief

Wildland Resources Faculty Publications

The advent of digital wildlife cameras has led to a dramatic increase in the use of camera traps for mammalian biodiversity surveys, ecological studies and occupancy analyses. For cryptic mammals such as mice and shrews, whose small sizes pose many challenges for unconstrained digital photography, use of camera traps remains relatively infrequent. Here we use a practical, low-cost small mammal camera platform (the “MouseCam”) that is easy and inexpensive to fabricate and deploy and requires little maintenance beyond camera service. We tested the MouseCam in two applications: a study of small mammal species composition on two transects across a barrier …

Measuring Spatial And Temporal Variation In Species Composition Of Ephemeral Pond Amphibian Assemblages Using Metabarcoding, Elizabeth Strasko

Masters Theses & Specialist Projects

Amphibian populations worldwide face severe threats, heightening the need for reliable monitoring methods. In this thesis, I explored and tested environmental DNA (eDNA) metabarcoding protocols to survey amphibian assemblages in ephemeral ponds of the the Green River Preserve in central Kentucky, USA. First, I evaluated whether the commonly used mitochondrial cytochrome c oxidase subunit I (COI) gene could effectively capture species-level variation in local amphibians for eDNA metabarcoding. Extensive primer design and testing revealed significant challenges in amplifying fragmented eDNA from water samples. In a second study, I applied a metabarcoding approach using the mitochondrial 12S ribosomal RNA (12S) gene …

Looking For Manna, Dung, And Craters - Uncovering Hidden Diversity In Circinaria Lichens, Lizzie Perry, Ginny Basset, Steve Leavitt

Library/Life Sciences Undergraduate Poster Competition 2025

• Lichens, symbiotic partnerships between fungi and photosynthetic organisms, are often overlooked in biodiversity studies due to their cryptic nature. The lichen genus, Circinaria —historically, described as “Manna Lichens”, “crater lichens”, “pigeon dung lichens”, and “excrement of the earth”¹ —remains understudied.
• This genus includes approximately 40 formally described species worldwide, however, only 13 have been documented in North America³.
• To better understand species-level diversity of Circinaria in Western North America, we used an integrated data set – DNA, morphology, and ecology – to characterize diversity and delimit potential candidate species.

Expression And Function Of Floral Symmetry Genes In The Regulation Of Flower Shape In Fedia Graciliflora, Theresa A. Mustacchio

Theses and Dissertations

Shifts between radial symmetry (actinomorphy) and bilateral symmetry (zygomorphy) in flowers have occurred multiple times independently within angiosperms (flowering plants). Evidence across angiosperms indicate the transcription factors RADIALIS (RAD), DIVARICATA (DIV), and CYCLOIDEA (CYC) play a major role in regulating floral symmetry and morphology. The CYC-like genes have been shown to shift their expression dorsally independently in nearly all shifts to bilaterally symmetrical flowers examined. Three core eudicot clades of CYC-like genes have been identified: CYC1, CYC2 and CYC3, with only CYC2 genes being shown to have a role in floral symmetry. We use the non-model plant, Fedia graciliflora (Caprifoliaceae) …

Climate And Gypsum Parent Material Shape Biocrust Communities And Moss Ecology In The Chihuahuan And Mojave Deserts, Katelyn Gobbie, Nicole Pietrasiak, Brian M. Jusko, Rebecca E. Drenovsky

2025 Faculty Bibliography

Biological soil crust communities (biocrusts) establishing on gypsum soils have been well-documented for their prolific appearance and rich diversity of lichens and bryophytes. However, studies characterizing gypsum biocrusts have occurred primarily outside of the U.S., most of which lack comparisons to other soil types. We conducted intensive field surveys to evaluate the ground cover and frequency of biocrust functional groups and moss species on gypsum and non-gypsum soils in the U.S. regions with the most extensive gypsum outcrops, the northern Chihuahuan and eastern Mojave Deserts. Study sites were stratified by geomorphology and paired, so that every gypsum site was matched …

The Association Of Vitamin D Supplement Intake On Cardiovascular Health Outcomes Among U.S. Adults, Using Nhanes Data., Lamisa Tanzim Ruhin

Graduate Research Theses & Dissertations

Background: Vitamin D, a fat-soluble nutrient essential for bone health and calcium homeostasis, has also been implicated in cardiovascular health outcomes. Despite extensive observational studies suggesting an inverse association between vitamin D deficiency and cardiovascular diseases (CVD), randomized controlled trials (RCTs) have yielded inconsistent findings regarding the efficacy of vitamin D supplementation in reducing cardiovascular risk.

Objective: This study investigated the association between reported vitamin D supplement intake and cardiovascular health biomarkers, specifically focusing on non-HDL cholesterol, among U.S. adults using NHANES 2021-2023 data.

Methods: A cross-sectional, quantitative analysis was conducted utilizing secondary data from NHANES. Participants aged 18 and …

Predicting Capture And Survival Probabilities Of The Arizona Tiger Salamander: A Comparison Of Capture-Recapture Models, Brittney Nelson

Murray State Theses and Dissertations

Capture-recapture models are essential tools for estimating population dynamics in ecological studies. A fundamental component of these models is the capture history matrix, which records individual detection over time and serves as the basis for estimating survival and capture probabilities. This presentation explores three statistical approaches to these estimations: the Cormack-Jolly-Seber (CJS) model, the Hidden Markov Model (HMM) for CJS, and the Bayesian CJS model. The CJS model provides a likelihood-based framework for estimation, and the HMM CJS incorporates latent states into the model to account for uncertainty in detection. The Bayesian CJS extends this same analysis by integrating prior …

History, Annotated Gazetteer, And Bibliography Of Ornithology In Kalimantan, Indonesian Borneo, Frederick H. Sheldon, Mohammad Irham, Daisy G. S. Kho, Erik Meijaard, Subir B. Shakya, Dewi M. Prawiradilaga, Sebastianus (Bas) Van Balen

Occasional Papers of the Museum of Natural Science, Louisiana State University

Kalimantan comprises nearly three quarters of the island of Borneo and is the place where scientific study of Bornean birds began. We describe the history of bird research in Kalimantan from its beginning, highlighting the ornithologists who explored the region and how their interests and methods changed over time, from a concentration on specimen collection, to examinations of community ecology, to conservation in the face of habitat change and species depletion, to the latest investigations using satellite, genetic, and digital technology. We also highlight some future directions for research, especially the need for more work on basic ecology and biogeography. …

The Influence Of Anthropogenic Infrastructure On The Reproductive Success Of Northern House Wrens (Troglodytes Aedon) In Proximity To Highways, Nana-Esi Irie Hanson

Master's Theses or Doctor of Nursing Practice

Anthropogenic disturbances, particularly road infrastructure and noise pollution, significantly affect avian populations, influencing their ecology, behaviour, and reproductive success. This study examined the impact of highway proximity on the reproductive success of the Northern House Wrens (Troglodytes aedon) in a rural landscape. Noise levels and reproductive outcomes were compared between two sites in Hays, Kansas: a high-traffic site near Interstate 70 (Sternberg Museum Nature Trail) and a lower-traffic site at Big Creek on the Fort Hays State University campus. I hypothesized that increased traffic volume and noise pollution would negatively affect Northern House Wren reproductive success. Ambient noise …

Scientific Writing: A Guide From Data To Draft, Kristin M. Klucevsek

Open Education Materials

Textbook for ENGL302W (Scientific Writing)

CC BY-NC-SA (2025)

Fire And Mammal Herbivory On Arthropods In The Protected Savannas: A Systematic Review, Ludzula Mukwevho, Mduduzi Ndlovu, Frank Chidawanyika

All Peer-Reviewed Publications

Protected areas in the savannas are key global reserves for biological diversity, including arthropods. Fire and mammal herbivory disrupts the diversity of biological organisms that alternately affects the functioning of the ecosystem. The study presents a global synthesis review of arthropod responses to varying intensities of fires and mammal herbivory in the protected savannas. We hypothesise that the intensity of predetermined fires and mammal herbivory has cascading impacts on abundance, species richness and diversity of terrestrial arthropods in the protected savannas. A minimum selection criteria was used to collate relevant literature from electronic databases of previous studies performed in the …

An Understanding Of The Feeding Ecology Of Teleoceras Fossiger And Teleoceras Aepysoma Using Dental Microwear And Mesowear Analysis, Gabriel S. Goncalves

Master's Theses or Doctor of Nursing Practice

Teleoceras is a genus of rhinocerotids that belongs to the Tribe Teleoceratines and was widespread across North America from the late Early Miocene into the Early Pliocene. This genus was very successful, spreading across the continental United States from Florida and Tennessee to California and Washington state down to central Mexico and Honduras. Teleoceras is characterized by having a large, rounded chest cavity and short limbs with relatively high crowned teeth and lower incisors modified into tusk-like teeth. Initial ecological comparisons were made to the modern hippopotamus based on proportions of the chest cavity and its hypsodont dentition. Stable carbon …

Impacts Of Southern Pine Beetle (Dendroctonus Frontalis Zimmerman) On Loblolly Pine (Pinus Taeda L.) Canopy And Water Use In The Homochitto National Forest, Mississippi, Usa, Sasha Goodnow, Yun Yang, Hui Liu, Ashley Schulz

Endeavors: Mississippi State Undergraduate Research Journal

Abiotic and biotic forest disturbances can have many impacts to forest ecosystem services, including to forest water use. Studies on impacts to forest evapotranspiration have been conducted on the mountain pine beetle (Dendroctonus ponderosae) in western North America, but not on the southern pine beetle (Dendroctonus frontalis), which is a native pest of loblolly pine (Pinus taeda) and shortleaf pine (Pinus echinata), in the southeastern United States. Stressed pine trees produce pheromones that attract southern pine beetles and, with enough stressed trees, beetle populations can quickly grow to epidemic levels and attack healthy trees, which results in widespread tree mortality. …

Investigating The Presence Of Individuality And Behavioral Syndromes In Northern Cottonmouths (Agkistrodon Piscivorus), Joshua Lowy

Graduate Theses/Dissertations

Within the last 15 ̶20 years, research on behavioral syndromes has seen a surge in prominence and popularity in behavioral ecology, revealing that many animals exhibit individually consistent behavioral tendencies. Behavioral syndromes occur when behavioral traits are correlated with one another within the same context or across different contexts. Despite new appreciation for the ecological, evolutionary, and conservation implications of behavioral syndrome data, the taxonomic breadth of studies is uneven. Snakes are underrepresented within squamate reptiles and, among venomous species, only two rattlesnakes (Crotalus) have been investigated for evidence of behavioral syndromes. My study investigates individuality and the presence of …

Assessing Genetic Diversity And Population Structure In The Imperiled Aconitum Reclinatum (White Monkshood), An Endemic Wildflower Of Central Appalachia, Diamanda A. Zizis

Master’s Theses

Aconitum reclinatum, white monkshood (Ranunculaceae), is a Pennsylvania critically imperiled plant species found in five states of the Appalachian region of the United States: Pennsylvania, West Virginia, Virginia, North Carolina, and Tennessee. This plant is adapted to cool, moist environments but faces threats from increasing habitat loss, deer browse, logging, and changes in rainfall and temperature associated with climate change. Comprehensive knowledge of A. reclinatum genetic population structure remains limited. To address this, we collaborated with Natural Heritage programs within the range of A. reclinatum to sample populations across the species distribution and generate a genotyping-by-sequencing data set of …

The Effect Of Sars-Cov-2 On Bacterial Diversity And Abundance In Community Wastewater, Joshua Lambert

Graduate Theses, Dissertations, and Problem Reports (ETD)

Severe acute respiratory syndrome corona virus 2 (SARS-CoV-2) enters human respiratory cells through binding of its spike (S) protein to the ACE-2 receptor, which is highly expressed in lung cells, but is also found in over 150 other cell types encompassing major organs including GI enterocytes. SARS-CoV-2 causes gut dysbiosis in infected individuals and patients with COVID-19 and also coincides with lower alpha diversity of the individual’s gut microbiome. Certain gut microbiome-associated genera are lower in abundance in COVID-19 patients including Lachnospira, Prevetolla, Roseburia, Bifidobacterium, and Faecalibacterium while genera such as Bacteroides, Enterococcus and Proteobacteria are increased during a SARS-CoV-2 …

Aspen Stands Enrich Bird Communities Following A Wildfire In A Montane, Mixed Conifer Forest, Cody Q. Lane

Graduate Student Theses, Dissertations, & Professional Papers

Fire is a major ecological force in most terrestrial systems, but the responses of animal communities to fire vary markedly across ecosystems due to variability in fire regimes and vegetation communities. Quaking aspen (Populus tremuloides) is unique within coniferous forests of western North America for its ability to regenerate following wildfire via vegetative resprouting. As managers employ techniques to restore fire regimes and conserve declining aspen forests, it becomes important to understand how aspen alters postfire communities. Our objectives were to (1) assess how aspen interacted with fire severity and years since fire to influence avian species and …

Characterization Of Novel Hantaviruses In Paraguay, Ifebuche Nnamani

Theses and Dissertations (ETD)

The genus Orthohantavirus, is a group of tripartite, negative-sense RNA viruses of which some members are the etiologic agents for hemorrhagic fever with renal syndrome (HFRS) or orthohantavirus cardiopulmonary syndrome (HCPS) in the Old and New Worlds, respectively. Sampling of wild rodents for these viruses has increased our knowledge of their host range and continues to lead to the discovery of new orthohantaviruses species and strains. HFRS and HPS have case fatality rates of up to 15% and 40%, respectively. And in some years, morbidity rates of up to 100,000 cases can be reached, globally. The epidemiological evidence of human-to-human …