Digital Commons Network^™

Exploring The Link Between Soil Microbes, And Land Use Through A One Health Lens, Yaw A. Antwi

Master's Theses or Doctor of Nursing Practice

The diversity of microbes within the soil plays an essential role in soil ecosystem

functioning. However, these microbes may also serve as environmental reservoirs for antibiotic resistance genes. The study examined the diversity of bacteria that are found in soil across Rural/Agricultural and Rural/Nonagricultural landscapes within some selected counties in Kansas and its associated antibiotic resistance genes taxa. A total of twenty-four soil samples was collected and analyzed using 16S rRNA gene amplicon sequencing which targeted the V3-V4 regions. Statistical analysis revealed that the alpha diversity metrics (Chao1 richness and Shannon evenness) showed no significant difference in microbial structure (p=0.693, …

Pollutant Load Reduction In Sarasota Bay, Florida (Usa): Target Development, Implementation, And Outcomes, David Tomasko, Mike Wessel, Jon Perry, Chris Anastasiou, Ryan Gandy

Gulf and Caribbean Research

Between 2006 and 2012, seagrass coverage across Sarasota Bay expanded by 1,108 ha, a 28% increase. During the subsequent years of 2012−2020, 830 ha of seagrass were lost, a 16% decline. In response to these findings, resource management efforts focused on determining the likely reason(s) why those 2 periods had such contrasting trends, to come up with strategies to reverse these losses. Based on results from the seagrass data, the 7—y period of 2006−2012 was designated a “reference period” and water quality data were compared against the subsequent 7—y designated “degraded period” of 2013−2019. Annual average chlorophyll-a (chl-a …

Bayesian Multivariate Modelling Of Lone Star (Amblyomma Americanum) Tick Life Stage Abundance And Temporal Trends To Inform Public Health Risk In Virginia, Thabo Lephoto, Henry Mwambi, Oliver Bodhlyera, Holly Gaff

Biological Sciences Faculty Publications

The increasing abundance of ticks poses a growing public health concern due to heightened human exposure to tick bites. The lone star tick (Amblyomma americanum: Ixodida: Ixodidae), a common human-biting species in the United States, has expanded its range in recent years. However, how its different life stages vary across time, habitats, and locations remains insufficiently understood. We analyzed tick abundance data collected in southeastern Virginia between 2009 and 2018, focusing on larval, nymphal, and adult life stages. A Bayesian multivariate modelling framework was used to examine seasonal patterns, habitat effects, spatial variation, and biological links between life stages. Two …

The Impact Of Food Insecurity And Associated Variables On Colon Cancer In Kentucky: An Ecologic Study, Claire E. Lynch

Theses and Dissertations--Public Health (M.P.H. & Dr.P.H.)

Objective: Given colorectal cancer incidence rates are increasing, especially in socioeconomic disadvantaged areas, this study aims to determine if there is an association between specific socioeconomic variables, such as food insecurity, and colon cancer at the county-level in Kentucky.

Methods: Colorectal cancer age-adjusted incidence rates at the county-level were collected from the Kentucky Cancer Registry. Conty-level data was collected from County Health Ranking, The U.S Census Bureau, National Institute on Minority Health and Health Disparities and the Behavioral Risk Factor Surveillance System from 2019 to 2023. R was used to run statical analyses such as a linear regression and a …

Environmental Predictors Of Human Lyme Disease Incidence Across Appalachian Counties In Kentucky, Virginia, And West Virginia, 2000-2019, Karlie D. Rennison

Theses and Dissertations--Epidemiology and Biostatistics

This ecological study examined county-level environmental, landscape, and host-related predictors of Lyme disease incidence across Kentucky, Virginia, and West Virginia from 2000-2019. Lyme disease is an emerging public health concern in the Appalachian region, where geographic expansion and shifting ecological conditions may influence disease risk.

Lyme disease case rates (per 10,000 population) were analyzed in relation to climate variables, land cover metrics, host density measures, and rurality using publicly available data sources. Descriptive and regression analyses were conducted to evaluate associations between candidate predictors and disease incidence.

Substantial geographic variation in Lyme disease incidence was observed, with higher case rates …

Open Source Tools For Ecological Research, Alex P. Riebe

Dissertations, Master's Theses and Master's Reports

This thesis presents the development of an open source wireless sensor network for hibernacula manipulation with an emphasis on accessibility and reproducibility. It addresses the design of the electrical hardware, guidance on antennas and RF implementation, and design of an application-specific communication protocol, all with the explicit goal of enabling ecologists and other conservationists to be able to manufacture, deploy, operate, and maintain the system for their research. The resulting sensor network designed in this thesis is to control the temperature inside bat hibernacula during the winter to study the relationship between temperature and bat mortality rate due to White …

Enhancing Coastal Vulnerability Assessments And Policy Impacts On Socioeconomic And Environmental Equity In Michigan's Great Lakes Communities, Esther N. Acheampong

Dissertations, Master's Theses and Master's Reports

Accelerating shoreline erosion, fluctuating lake levels, and climate-induced hazards are transforming the Great Lakes’ freshwater coasts, exposing the limitations of static and inequitable management frameworks. This dissertation investigates how Michigan’s coastal governance systems produce and manage vulnerability along the Lake Michigan shoreline by integrating geospatial modeling, institutional policy analysis, and environmental justice theory. It argues that both physical processes and institutional designs co-determine patterns of exposure, protection, and equity. The research begins by developing a refined Coastal Vulnerability Index (CVI) tailored for lacustrine environments, applying it to Muskegon County to assess how shoreline change, armoring, and seasonality influence localized risk. …

Effects Of Conifer Encroachment On Oregon White Oak Crown Structure And Nonvascular Epiphyte Communities, Courtney Jonell Copper

Cal Poly Humboldt theses and projects

Oregon white oak (Quercus garryana, QUGA) is an ecologically and culturally important broadleaf tree species native to northern California and the Pacific Northwest. Fire suppression and subsequent encroachment by Douglas-fir (Pseudotsuga menziesii, PSME) and other conifers have made QUGA woodlands among the most threatened habitat types in the region. This study examines the influence of conifer encroachment on QUGA crown structure and nonvascular epiphyte (NVE) communities using ground- and crown-based sampling techniques.

Twenty-four trees were sampled across four sites in northern California along a gradient of conifer encroachment that was quantified as PSME basal area (BA). A …

Comparison Of The Biodiversity Of Culturable Yeast From Four Different Habitats, Frank V. Addeo

All Master's Theses

Yeasts are ubiquitous unicellular fungi that play critical roles in decomposition, nutrient cycling, and fermentation processes across diverse ecosystems. Despite their ecological and biotechnological importance, the diversity and distribution of wild yeast populations in many temperate regions remain poorly characterized. This study evaluated how classifier thresholds influence species assignment and functional inference from internal transcribed spacer 2 (ITS2) Sanger sequences of cultured yeasts collected from diverse habitats in central Washington. The project aimed to assess the stability of taxonomic calls across classifier settings and to illustrate how methodological decisions shape downstream ecological conclusions. Samples from each habitat were enriched under …

Noninvasive Monitoring Techniques: The Use Of Scat-Sourced Dna And Camera Traps To Monitor Mammalian Carnivore Species At The Ucf Arboretum, Zachary Montealegre

Honors Undergraduate Theses

The 800-acre University of Central Florida Arboretum Natural Lands functions as a conservation area, recreational space, and research site, making it essential to understand the ecological community it supports. Traditional wildlife monitoring methods such as mark-recapture and blood sampling can be effective but may stress animals or disrupt natural behaviors. To minimize these impacts, this study used non-invasive techniques, specifically scat-based DNA analysis and camera trapping, to assess carnivore species' presence. Two ecologically similar sites within the Arboretum were selected. Suspected carnivore scat was collected twice weekly over two months using both structured and opportunistic sampling. DNA was extracted, amplified, …

Prescriptive Behaviors: Tracking The Social Impact Of Film Portrayals Of Black Men, Garfield Ronald Benjamin

Theses and Dissertations

Cinematic and televisual media express the thoughts and emotions of people and cultures with the potential of unifying people through the social realities that are created around the visuals, narratives, and on-screen interpersonal interactions. Through media like film, television, and short-form online video, people interact with others in ways that, because of barriers like physical distance and/or social structures, they may not be able to in real life. The images, sounds, and stories depict their own realities, which are consumed, interpreted, and understood by viewers and can inform their perceptions and interpersonal interactions. Stuart Hall, Jamaican-British, cultural theorist, and political …

How Do Individual And Environmental Covariates Impact The Immune Response Of Deer Mice In Western Montana?, Rachel A. Throckmorton, Angela Luis

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Sin Nombre Virus (SNV) is an exceptional model system for studying wildlife disease because of how simple it is to capture, take samples, and obtain disease status from the primary host. Immune response is an important factor to consider when testing for SNV because it can affect susceptibility of the host as well as transmission of the virus. We examined individual and environmental conditions that may predict immune response and therefore possibly SNV transmission in wild populations. We investigated whether SNV infection status, reproductive status, sex, and season correlate with immune response through examining total white blood cell (WBC) counts …

Mitochondrial Efficiency: Bridging Early-Life Environment And Organismal Performance, Kayla E. Lichtner

Master’s Theses

Mitochondria operate at the forefront of organismal-environmental interactions. Despite remarkable diversity in mitochondrial function both within and among species, all mitochondria serve a universal role in facilitating the flow of energy between organisms and their environment. Energetic efficiency, the way in which organisms assimilate and transform environmental substrate into physiological currency, is a major determinant of organismal performance. Although previous studies have shown that early-life environment can have lasting effects on metabolism, the underlying mechanisms driving the emergence of mitochondrial phenotypic variation remain poorly understood. Leach’s storm-petrels (Hydrobates leucorhous) provide a valuable opportunity to investigate longitudinal hypotheses of …

From Millionaires To Marsh Island: Origin And Development Of Wetland Conservation Efforts In Louisiana, Roan Guidry

Distinguished Undergraduate Researcher Program

Wetlands are protected, managed, and restored worldwide to provide a range of ecosystem services, including (i) habitat for plants and animals, (ii) carbon storage, (iii) improving downstream water quality, and (iv) reducing flooding by river and coastal waters. When did such conservation begin, and how do early conservation efforts shape recent public policy? This thesis identifies some of the earliest recorded examples of private efforts in Louisiana and analyzes how these early efforts shaped State and Federal Government action in the realm of conservation. The earliest wetland protection efforts in Louisiana began in the 1910s to sustain continental populations of …

An Introduction To Field Excursions For The 2026 Geological Society Of America Cordilleran Section Meeting In Loreto, Baja California Sur, México, Scott E.K. Bennett, Michael H. Darin, Genaro Martínez Gutiérrez

Geology Faculty Publications and Presentations

The 122nd annual meeting of the Geological Society of America (GSA) Cordilleran Section will be held in Loreto, Baja California Sur, México, an idyllic and historic Sonoran Desert city nestled on the eastern shore of the Baja California peninsula. The 2026 Loreto meeting marks a milestone for GSA as it is the first time in the Section’s century-plus history that the meeting has been held on the Baja California peninsula and only the third time that the meeting has been held in México. Thus, the 2026 Loreto meeting and related field trips represent a meaningful expansion of the Section’s engagement …

A Sensory Ecology Of Fear: Moonlight-Mediated Predation Risk And Foraging Behavior In Neotropical Electric Fish, Chiu Lok Poon

Graduate Studies Theses and Dissertations 2026

Animals must forage to acquire energy for survival and reproduction, yet foraging exposes them to predators. This creates a trade-off between energy intake and safety, wherein the perception of predation risk alone can alter activity patterns. Within this trade-off, risk, energetic needs, and sensory adaptations vary, shifting the balance and favoring different foraging strategies. Using Neotropical electric fish as a study system, I investigated how foraging under predation risk is shaped across biological scales, including environmental dynamics, interspecific sensory differences, activity-timing mechanisms, and intraspecific variations. These nocturnal fish emit continuous electric signals to sense their environment, allowing non-invasive monitoring of …

Lower Suicidal Ideation Linked To Easier Access To Urban Green Spaces During The Covid-19 Pandemic: A Nationwide Study In Japan, Zheng Xian, Tomoki Nakaya, Clive E. Sabel, Ryo Okubo, Kun Liu, Jinguang Zhang, Takahiro Tabuchi

School of Geography, Earth and Environmental Sciences

Urban green spaces (UGSs) have been linked to improved mental health and lower suicide rates, yet their protective role during large-scale crises remains underexplored. We examined associations of UGS accessibility with long-term and pandemic induced new-onset suicidal ideation during the early phase of the COVID-19 pandemic in urban Japan, using data from a nationwide health survey of 17,376 participants (August 2020). Modified Poisson regression models estimated prevalence ratios (PRs) for suicidal ideation by UGS accessibility (area, number, and type) within 5, 10, and 15-minute walking thresholds from home, controlling for individual and area-level confounders. UGS accessibility exhibited dose-response relationships with …

Environmental Monitoring In Shallow Lakes: Public Health Threats In Urban Waters, Kyleigh E. Johnson

Theses and Dissertations

Lakes are an integral part of urban and suburban communities, providing ecological, recreational, and public health benefits. Many of these lakes are located in densely populated areas and are subject to urban influences on water quality. Algal toxins and Escherichia coli are two common recreational concerns. Algal toxins come from harmful algal blooms that are influenced by nutrient availability and temperature, while bacteria are often introduced through run-off and animal waste. Sampling every 3-4 weeks from May-October 2025 allowed for the assessment of seasonal patterns and site-specific differences across nine lakes in the Richmond area. The highest bacterial concentrations appeared …

Machine Learning-Based Spatio-Temporal Modeling Of Climate Dynamics And Desertification In The Sahara–Sahel Region, Stephen M. Tivenan

Theses and Dissertations

Arid climate classifications are threshold-dependent and easily interpretable mappings that are widely used in ecological, agricultural, and climate-related studies. These classifications inform scientific understanding, support policy and land management decisions, and provide an intuitive summary of environmental conditions. Despite their usefulness, traditional arid climate classifications often fail to quantify uncertainty, incorporate spatial context, or account for complex relationships among relevant environmental variables. Existing approaches to uncertainty assessment have largely relied on comparing classifications across multiple datasets or alternative formulas, but these methods generally overlook important spatial dependence and latent structure in the data.

This dissertation develops three machine learning-based statistical …

Predicting Healthcare-Seeking For Childhood Diarrhea Across Low- And Middle-Income Countries, Madi Baltagulov

Public Health Theses

Healthcare-seeking behavior (HSB) for childhood diarrhea is a central but persistently uncertain input for rotavirus burden models and vaccine cost-effectiveness analyses. Demographic and Health Surveys (DHS) provide the only nationally representative measurements, yet they are expensive and absent from the majority of low- and middle-income countries (LMICs). This thesis asks whether publicly available country-level indicators can substitute for DHS data when survey estimates are unavailable.Using the most recent DHS conducted between 2011 and 2024 in 51 LMICs (78,008 children under five with diarrhea), I fit a multilevel modified Poisson regression and a two-stage random-effects meta-regression with four World Bank moderators: …

Effectiveness Of The Release Of Wmel Wolbachia-Infected Aedes Aegypti Mosquitoes On The Incidence Of Chikungunya In Campo Grande, Brazil, Vivienne Zhong Ying Su

Public Health Theses

Chikungunya is a mosquito-borne arboviral disease primarily transmitted by Aedes aegypti and Aedes albopictus that is rapidly emerging in new geographical settings because of climate change, viral adaptation, and globalization. Brazil has experienced the significant expansion of chikungunya over the past decade and has adopted novel vector control interventions, including Wolbachia-based population replacement, as part of its public health response. While the effectiveness of wMel Wolbachia on dengue incidence has been demonstrated across multiple settings, evidence on its effect on chikungunya risk remains limited. Large-scale releases of wMel-infected Aedes aegypti mosquitoes were implemented in the city of Campo Grande, Brazil …

Gut And Blood Diversity Microbiota Of Tilapia (Oreochromis Niloticus) Reared In Aquaponic Systems: A Scoping Review, Ang´Elica Adiaç˜Ao Jossefa, Leonildo Dos Anjo Viagem, Brunno Da Silva Cerozi Brunno Da Silva Cerozi, Sebastian Wilson Chenyambuga Sebastian Wilson Chenyambuga Chenyambuga

All Rsif Scholars' Publications

Tilapia is commonly integrated with vegetables in aquaponics systems, where complex microbial interactions may have important implications for food safety. This scoping review examines the current evidence on the microbiota diversity of tilapia reared in aquaponics systems, analyzes its potential influence on food safety, and highlight direction for future research. The review followed the Preferred Reporting Items for Systematic Re- views and Meta-Analyses Extension for Scoping Reviews (PRISMA-ScR) guidelines and included studies pub- lished between 2000 and 2025, retrieved from five scientific databases, including Google Scholar, Web of Science, Science Direct, PubMed, and Wiley Online Library. Only three studies met …

The Relationship Between Symptom Catastrophizing And Sociocultural Factors Among Adults With Persistent Sympathetic Activation Syndromes, Whitney M. Redemer

Theses and Dissertations

Persistent Sympathetic Activation (PSA) has emerged as a potential unifying mechanism underlying a range of complex chronic health conditions yet remains poorly characterized within biomedical and psychosocial research. Limited research has delineated how PSA manifests across diverse populations or how diagnostic and sociocultural factors shape lived experiences of this phenomenon; thus, the objective of the present study was to examine whether diagnostic certainty – operationalized as provider-confirmed versus self-suspected PSA-related diagnoses – is associated with symptom catastrophizing, and whether this relationship varies as a function of sociocultural factors. Drawing on data from a larger study aimed at characterizing the lived …

The Strength Of The Association Between Obesity And Mortality From Diabetes Among Adults In Florida, Diego A. Garcia, Jacob Bleasdale Phd,Ms,Ches, Cristobal Cintron Msc, Drph

High Impact Practices Student Showcase Spring 2026

Background: Diabetes mellitus is a leading cause of preventable death across the United States, with obesity being directly tied to this condition as one of its most significant and modifiable risk factors. Although national-level evidence strongly supports this association, Florida-specific population data is still limited.

Methods: County-level adult obesity prevalence and age-adjusted diabetes mortality data were obtained directly from the Florida Health CHARTS website (FL DOH,2024) for all Florida counties. The Pearson correlation (r) was used to evaluate the strength of association between the variables

Results: A statistically significant, moderate-positive correlation was found between adult obesity rates …

Growing Agroecology: Two Case Studies From The U.S. Student Farm Movement, Amelia B. Armstrong

Graduate Student Theses, Dissertations, & Professional Papers

Scholars and activists identify agroecology as a crucial science, practice, and movement to move towards more just, equitable, and sustainable agriculture and food systems. Yet, the exploitative industrial food system, that deepens inequalities like food insecurity (Clapp et al., 2025), reduces farmer autonomy (Rotz, 2015), and contributes to increased carbon emissions (Lin et al., 2011) and biodiversity decline (Rotz, 2015), still dominates. Understanding and mobilizing the different spaces that teach agroecology, then, is a crucial step in challenging the dominant industrial food system. Agroecology education in university settings is an important domain to investigate as potential contributors to this movement, …

Occupational Exposure To Pesticides Increases The Risk Of Amyotrophyc Lateral Sclerosis: A Systematic Review And Meta-Analysis, France Labrèche, Pamela Prudhomme, Maryse Gagnon, Nicolas Dupré, Sabrina Gravel

Études primaires

Objective To systematically review the evidence on the association between occupational exposure to pesticides and the risk of amyotrophic lateral sclerosis (ALS).

Methods A systematic search, conducted in eight bibliographic databases for publications between 1990 and 2025, identified observational studies estimating the risk of ALS after occupational pesticide exposure. Study quality was assessed using the WHO Risk of Bias (RoB) assessment instrument for systematic reviews, with the ROBINS-E (RoB in non-randomised studies of exposure) tool domains of bias. Pooled risk estimates were produced using random-effects models with restricted maximum likelihood, heterogeneity was assessed with I² statistics, and meta-regressions and publication …

Bioremediation Potential Of Indigenous Stutzerimonas Stutzeri 08tbb Isolated From Mercury-Contaminated Gold Mining Sites In Indonesia, Uun Rohmawati, Juanita Hibatullah, Achmad Rodiansyah, Yunita Messe, Dwi Nur Aini Fajriah

Applied Environmental Research

Artisanal and small-scale gold mining (ASGM) widely uses mercury (Hg) in the amalgamation process, and the resulting waste is often discharged directly into the environment, posing serious risks to ecosystems and human health because of the high toxicity of Hg. This study aimed to isolate and screen indigenous Hg-tolerant bacteria from contaminated gold mining sites in Indonesia; characterize the most effective isolate using morphological, biochemical, and molecular approaches; evaluate Hg(II) degradation performance using ICP‒OES, FTIR, and SEM analyses; and identify key metabolites involved in Hg detoxification through untargeted LC–HRMS metabolomics. A total of 51 bacterial isolates were obtained from Hg-contaminated …

Tree Composition And Carbon Sequestration Potential Of A University Campus In Bangkok, Thailand, Chaiwat Boonpeng, Pawanrat Butrid Butrid, Marisa Pischom, Satatip Noikrad

Applied Environmental Research

Trees play important roles in atmospheric carbon dioxide (CO2) absorption and climate change mitigation. The objective of this study was to assess tree characteristics and carbon sequestration potential at Ramkhamhaeng University (Hua Mak Campus), Bangkok, Thailand. Tree attributes, including species composition, abundance, diameter at breast height (DBH), and tree height, were recorded. Tree biomass, carbon storage, and CO2 sequestration were estimated using appropriate allometric equations. A total of 2,149 trees were recorded in the study area, corresponding to a tree density of 45.8 trees ha-1. The tree community was dominated by the palm family (Arecaceae), while Terminalia ivorensis was the …

Investigating Spatial And Seasonal Differences In Microgastropod Assemblages Within The Little-Studied Camamu Bay, Brazil: A Potential Bioindicator For Remote Tropical Areas?, Francisco Kelmo, Sol De Maria Cesar Ferreira, Eduardo Henrique Galvão, Martin J. Attrill

School of Biological and Marine Sciences

This study investigates spatial and seasonal variation in the assemblages of benthic microgastropods (snails < 5–10 mm in length) within a poorly studied tropical bay. As these organisms are abundant, diverse and relatively easy to sample, with well-established taxonomy, they may prove a highly suitable group for ecological studies in such areas. Sediment samples were collected from three river basins in Camamu Bay, Brazil, during the wet and dry seasons. A total of 132 microgastropod species was recorded, demonstrating high diversity. The most abundant species were Eulithidium affine, Bittiolum varium, Cerithium atratum, Vitta virginea and Schwartziella bryerea. The least abundant species were Tenaturris gemma, Turbinella laevigata, Petaloconchus erectus, Parviturboides interruptus and Vitrinella cupidinensis. Statistical analysis revealed significant seasonal and spatial differences in diversity and assemblage composition, which correlated with environmental gradients. The results suggest that microgastropods are a suitable component of the biota for ecological and applied studies in marine sediments, particularly in remote tropical locations where full macrofaunal analysis may be challenging. Whilst further testing across impact gradients is needed, this approach offers a practical solution for ecological investigations in remote regions with limited taxonomic expertise and highlights microgastropods as a useful indicator taxon for impact biomonitoring in tropical marine sediments.

Comparative Analysis Of Six New Chloroplast Genomes In Platanthera (Orchidaceae) Enhances Understanding Of Its Diversification, Lisa E. Wallace, Martin I. Batalla, Matthew Maisonave

Biological Sciences Faculty Publications

Platanthera is among the most diverse genera of orchids in north temperate regions, with high species diversity in Asia and North America. Despite many ecological studies in this group, little is known about its genomic diversity. Here, we report the newly annotated chloroplast genomes from six species in subgenus Limnorchis from North America and compare them with plastomes published for Platanthera species from Asia and Europe. We found that the plastomes of species in subg. Limnorchis are among the smallest reported for Platanthera thus far. While major structural differences were not detected in the newly sequenced species, ndh genes were …