Digital Commons Network^™

Preferred Plants And Nectar Collecting Times For Honey Production, David Macfawn, Jennifer M.K. O'Keefe, Sophie Warny, Carol Wymer, June Rampy Ponder

Clemson Extension Publishing

This book addresses three important questions for South Carolina beekeepers – which plants are bees in South Carolina using for nectar forage, when bees collect nectar from those plants, and how can understanding nectar foraging habits inform beekeepers as they work to gather specific types of premium honey? In 2021, the South Carolina Beekeeper’s Association, led by David MacFawn, designed and implemented a statewide pollen study, the first in any state in over fifty years, to answer these questions. Informed by data gathered from 19 apiaries across the state, this book contains the results of that study, including large-scale melissopalynological …

Reaction Control Mechanism In Deoxyuridine 5'-Triphosphate Nucleotidohydrolase, Aaron Delay

School of Biological Sciences: Dissertations, Theses, and Student Research

Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) is an enzyme involved in the pyrimidine biosynthesis pathway, a key component of cellular DNA metabolism. It regulates intracellular uracil carrying triphosphate levels by hydrolyzing dUTP, thereby providing a substrate for thymidylate synthase (TS). The effective inhibition of dUTPase is expected to enhance TS-targeted chemotherapy by promoting thymine-less apoptosis.

Although the reaction mechanism of dUTPase has been studied, the human nuclear homotrimeric form remains complex, as all three subunits cooperatively form a single active site. As a result, the detailed molecular dynamics of its catalysis are still not fully understood. In this study, I investigated the …

Environmental Related Variation In A Natural Grassland Of Rio Grande Do Sul, Brazil, V De P. Pillar, A.V A. Jacques, I I. Boldrini

IGC Proceedings (1977-2023)

Vegetation ecology studies help research efforts to improve natural grassland productivity by laying foundations for improvement techniques directed to benefit desired plant com­munities. Experiments reveal knowledge about the environ­mental conditions responsible for community structure and productivity, while surveys are a fast and cheap means for exploratory studies. In either case, data interpretation are helped by multivariate methods described by different authors, e.g., Orloci and Kenkel (1985). Our work is aimed to identify the environmental factors most responsible for vegetation variation in natural grasslands, locally known as « campos », and to formulate hypotheses about the effects of fertilization and grazing …

Crayfish Microhabitats Provide A Close Association With Benthic Microbiomes To Support Cleaning Symbionts., Kyle J. Harris, John Hoverson, Matthew Becker, Matthew M. Cooke Mr

NEXUS: The Liberty Journal of Interdisciplinary Studies

Stream ecosystems promote variable microhabitats along a longitudinal gradient. These microhabitats support dynamic biotic assemblages. One such microhabitat in freshwater streams involves the external surface of crayfish. We investigated the microbiome of crayfish exoskeletons and the surrounding environment (water and substrate) in association with the presence and abundance of crayfish cleaning ectosymbionts (branchiobdellidans). These ectosymbionts actively consume the biofilm on crayfish as they live and reproduce in association with crayfish microhabitats. Sequenced microbes of the environment and crayfish were compared for dominant taxa. While the sample types (water, substrate, and crayfish) had significantly different microbiomes, there was not a significant …

The Factors Affecting The Distribution Of Scorpions (Arachnida: Scorpions) In Iran, Hassan Nasirian

Chulalongkorn Medical Journal

Background: The distribution of scorpions is influenced by various factors that determine their presence and abundance in different regions. Understanding these factors is crucial for comprehending scorpion ecology and predicting their potential impact on ecosystems. Objective: These subtopics aim to provide an overview of the distribution of scorpions within Iran and the factors affecting their distribution, highlighting their ecological preferences and adaptations to different regions.

Methods: Forty-nine documents were collected from well-known indexing services, including Elsevier, Google Scholar, PubMed, ScienceDirect, Scopus, Springer, and Web of Science. After carefully studying the documents, they were classified into specific topics and discussed.

Results: …

Analyzing Human - Nonhuman Primate Conflict Mitigation Techniques In Mto Wa Mbu, Northern Tanzania, Lil Adams

Undergraduate Theses, Capstones, and Recitals

Human-wildlife conflict is a widespread challenge faced by those living in regular contact with wildlife that can have profound impacts on livelihood outcomes for humans, wildlife, and their shared environment (Barua et al., 2013; Blackie, 2023). Human – non-human primate conflict is particularly crucial due to primates’ high capacity to live among human populations (Chapman & Chapman, 1990; Alberts & Altmann, 2006; Reader et al., 2011; Sinha & Vijayakrishnan, 2017), and is currently on the rise due to increasing contact between human and non-human primates (Hockings, 2016; Uddin et al., 2020). To characterize and analyze techniques currently being used to …

Anthropogenic Litter In Freshwater Ecosystems: Effect On Ecosystem Processes And Spatial Distribution, Emily Johnson

Master's Theses

The rapid increase of plastic production and disposal into the environment has resulted in anthropogenic litter (i.e., trash; AL) becoming a global problem. In aquatic ecosystems, macro- and microplastics are long-lived, mobile, and interact with the physical and chemical components of aquatic ecosystems. Our objectives were to: (1) assess the impact of microplastic pollution on the ecosystem processes of ecosystem metabolism and N2 flux in an oligotrophic lake and (2) to assess the abundance and assemblage of anthropogenic litter in a large urban river. For objective (1), we added microplastics at a range of concentrations to littoral mesocosms. Ecosystem metabolism …

The Distribution Of The Pentatomoidea In The Northeastern Quarter Of The United States (Hemiptera), J. E. Mcpherson

The Great Lakes Entomologist

The distributions of the pentatomoids occurring in the northeastern quarter of the United States as listed by Van Duzee in 1917 are updated.

When Trees Disappear: Understory Successional Implications Of Sudden Oak Death And High-Severity Wildfire In Big Sur, California, Sam J. Balthazard

Master's Theses

The rapidly emerging disease sudden oak death, caused by the non-native pathogen Phytophthora ramorum, is transforming coastal California forests by driving extensive mortality of tanoak (Notholithocarpus densiflorus) and increasing fire severity. As a novel disturbance, sudden oak death and its interaction with wildfire may catalyze unexpected shifts in successional trajectories and reconfigure forest understory communities. Furthermore, how tanoak influences the forest understory and how its decline might reshape understory dynamics remain poorly understood. We hypothesize that disease alone and the compounding disturbances of disease and wildfire alter successional dynamics, and that the potential functional extinction of N. …

Diversity And Activity Of Ground-Dwelling Spiders (Araneae) In Four Sub-Communities In A Degraded Oak Woodland At The Chicago Botanic Garden, Cook County, Illinois, James F. Steffen, Michael L. Draney

The Great Lakes Entomologist

Ground-dwelling spiders were sampled using pitfall traps over a twelve-month period from four sub-communities within a 40-ha oak woodland complex in northern Cook County, Illinois. Mesic and dry mesic oak woodland, mesic upland forest, buckthorn dominated mesic oak savanna and a mesic woodland control, where no restoration management is planned, were sampled. Fifty-five species within 44 genera and 18 families were trapped. The results suggest negative correlations between non-native spider abundance and spider species richness. Also, phenology of the various species indicates that a year-round inventory is necessary to adequately sample ground-dwelling spider assemblages. Possibilities of using Bathyphantes concolor (Wider) …

Simulation Of The Effects Of Stand Factors On Spruce Budworm (Lepidoptera: Tortricidae), W. P. Kemp, J. P. Nyrop, G. A. Simmons

The Great Lakes Entomologist

A model was developed to simulate the life history of instar-I through instar-I1 spruce budworm, Choristoneura fumiferana (Clemens). Particular emphasis was given to the redistribution phases during spring and fall and the factors affecting budworm survival. Analyses included the effects of aggregated stand types, temperature, cloud cover, open areas, and the species distribution, on redistribution mortality. Of those stand factors examined, open area and non-host percentages were the most important in regulating redistribution survival.

A Checklist Of Illinois Centipedes (Chilopoda), Gerald Summers, J. A. Beatty, Nanette Magnuson

The Great Lakes Entomologist

Records for 45 centipede species occurring in Illinois are given with a brief discussion of general habitat features and the effects of certain environmental factors on specific distribution patterns. The chilopod fauna of Illinois includes species from southeastern, western, and northern physiographic regions and represents a richer mixture of chilopod species than is found in any adjacent state.

Instar Head Widths, Individual Biomass, And Development Rate Of Forest Tent Caterpillar, Malacosoma Disstria (Lepidoptera: Lasiocampidae), At Two Densities In The Laboratory, Jocelyn M. Muggli, William E. Miller

The Great Lakes Entomologist

Two colonies of forest tent caterpillar were reared at different densities on trembling aspen foliage in an environment chamber programmed for natural temperatures. Based on direct observation of molting, both colonies underwent five instars which overlapped negligibly in head width. Instar head widths were relatively stable between colonies, but individual biomass was sensitive to the different densities. Instars 3-5 in the less dense colony were heavier than those of the more dense by factors of 1.3-1.9. Development to 10-20% of larvae spinning cocoons took 40 days in the less dense colony and 45 days in the more dense. Size of …

Discrimination Of Sprat Species (Clupeonella Spp.) In The Caspian Sea And The Sea Of Marmara Using Otolith Shape Analysis, Mohammad Reza Shariati, Mohammad Sadegh Alavi-Yeganeh, Mehdi Ghanbarifardi, Gülşah Saç, Müfi̇t Özuluğ, Erdoğan Çi̇çek

Turkish Journal of Zoology

This study evaluates the discriminating power of sagittal otolith shape among three species of the genus Clupeonella endemic to the Caspian Sea (Clupeonella grimmi, Clupeonella caspia, and Clupeonella engrauliformis) and one species from the Sea of Marmara (Clupeonella Cultriventris). Identification of these species is challenging due to their morphological similarities, and the taxonomic validity of C. caspia and C. cultriventris remains ambiguous because of their resemblance. Scanning electron microscope (SEM) images were utilized to examine the morphological characteristics of otoliths. Stereomicroscope images were used to calculate six shape indices: rectangularity, roundness, ellipticity, circularity, aspect ratio, and form factor. The outline …

Pollinator Plant Communities Within Restored Montane Longleaf Pine Ecosystems, Hanen Van Rossem

Master's Theses

Historically the fire-dependent and biodiverse longleaf pine (Pinus palustris) ecosystem was the dominant ecosystem of the Southeastern US. This ecosystem’s range was massively reduced due to land conversion and fire exclusion, causing the decline of many native species. Efforts to restore and protect longleaf pine stands are now ongoing with the goal of expanding habitat and refuge for threatened species. Differences in restoration practices and prior land use may influence the extent to which restored habitat patches can support pollinators and their plants. This study compared pollinator plant biodiversity between restored neighboring montane longleaf pine stands that differed in …

Sex, Skulls, And Selection: An Exploration Of Blakely Island's Deer Population And Their Ecology Through Genetic Sex Differentiation Of Juvenile Crania, Blair P. Graves

Honors Projects

As an isolated landmass with no natural predators, Blakely Island serves as an effective study site for the study of evolutionary factors relating to insular populations of large mammals. A disparity in the adult sex ratio of local deer has been observed, but the demographics of juveniles must still be ascertained through genetic methods. This study aims to further research concerning the development of a replicable and non-toxic procedure through which undergraduate students can identify the sex of numerous juvenile deer crania. Specifically, differing decalcification lengths, DNA extraction kit methods, and amelogenin primer sets were evaluated for relative success in …

Stress-Related Phenotypic Differentiation Identified By Motivational Behaviors In Male Mice, Renee A. Brummels

Honors Thesis

Social stress substantially contributes to psychological disorders, including anxiety, depression, and post-traumatic stress disorder. Recognizing these disorders affect millions, it is essential to understand social stress’s impacts on behavior and how these behaviors vary among affected populations. We address these questions through a social defeat/avoidance paradigm, the Stress-Alternatives Model (SAM), which demonstrates defeat (Stay) and avoidance (Escape) responses across species, including fish, rats, hamsters, and mice. Avoidance of social conflict in the SAM is possible by utilizing escape routes for smaller test mice during aggressive interactions. Additionally, measurements of SAM motivational behaviors, like time near and nose pokes into escape …

Multi-Domain Machine Learning For Biological Classification: Mallard Classification And Protein Function Prediction, Tolulope Samuel Adeyina

Open Access Theses & Dissertations

Multi-domain machine learning applications have revolutionized how we understand and predict complex biological phenomena. This dissertation presents novel computational methodologies addressing two critical problems: mallard classification using single-nucleotide polymorphisms (SNPs), and protein function prediction via interpretable topic-aware peptide embeddings. The research focuses on distinguishing mallard populations through SNP data, which are inherently characterized by ultra-high dimensionality. The research uses advanced feature-selection and dimensionality-reduction strategies alongside machine learning classification algorithms to identify minimal, yet highly predictive SNP sets crucial for accurate breed differentiation. This framework demonstrates robust performance with optimal computational efficiency, significantly aiding conservation and breed management efforts. Furthermore, the …

Movement Ecology Of Sandhills Chub, A Carolina Endemic, Zachary Adam Ramsey

Electronic Theses and Dissertations

Fish movement studies have traditionally focused on species that support commercial and recreational fisheries, but recently more focus has been given to non-game, stream fishes because of their recognized importance in maintaining biodiversity within these ecosystems. Stream fish movement is described as being “restricted” and following a leptokurtic distribution via diffusive spread related to environmental and biological factors. Many studies of stream fish movement ecology in North America have occurred in high-gradient streams with coarse substrate in mountains or in streams of the interior plains. Sandhills streams of the southeastern USA are characterized as warm-water, low gradient, and dominated by …

Maggot Mass Effect On The Development And Survival Of Forensic Blow Flies, Akomavo Fabrice Gbenonsi

School of Natural Resources: Dissertations, Theses, and Student Research

Forensic entomology scientists use blow flies' developing patterns to estimate the postmortem interval (PMI). However, larval aggregations produce metabolic heat, resulting in complex microclimates that may change growth timetables. This study investigates how larval density and associated temperature changes affect the development and survival of two forensically essential blow fly species, Lucilia sericata and Calliphora vicina.

This study examined how larval density and associated thermal profiles affect the development of both blow fly species. Using a split-plot design, we tested four larval densities at 25°C and 30°C, with temperature gradients measured via thermocouple at four mass positions three times …

Ecological Consequences Of Variable Glacial Melting On Arctic Biodiversity: Trophic Shifts And Community Dynamics, Aislyn Malone, Audrey Swart

Celebrating Scholarship and Creativity Day (2018-)

Our project investigated the profound impacts of increasing glacial melting on various trophic levels, habitats, and other ecological processes.

Advancing Marine Animal Movement Studies Using An Open Innovation Framework, Jacob Levenson

Graduate Doctoral Dissertations

This dissertation investigates the application of open innovation to migratory marine animal movement studies, addressing critical challenges in understanding, managing and ultimately conserving highly mobile and migratory species (HMMS). The species examined herein, including manta rays, sea turtles, and marine mammals, face threats including habitat disruption and behavioral changes to adapt to anthropogenic stressors. Traditional monitoring techniques, while valuable, are often costly, limited in scale, and protected by proprietary intellectual property, all of which decrease accessibility. Ambitious conservation goals, such as protecting 30% of the ocean by 2030, require more data that are indubitably sharable and thus will need to …

Potamogeton Crispus Invasion: Impacts On Native Aquatic Plants And Associated Faunal Habitat, Meghan-Grace Slocombe

All Graduate Theses and Dissertations, Fall 2023 to Present

Aquatic invasive plants are non-native plants that invade a water body and displace native aquatic plants. Invasion depletes the native plant community's ability to provide ecosystem services, including improved water quality, decreased problematic algae, and increased animal habitat. The loss of these ecosystem services reduces the value of fishing, boating, and swimming opportunities in aquatic ecosystems. The potential changes in plant communities and services are particularly important at sites targeted for restoration because project goals typically include increasing ecosystem services, including wildlife habitat. Curly-leaf pondweed (Potamogeton crispus L.) is a problematic invasive species in North America. To better manage …

Exploring Community Change Of North American Stream Fish Communities Due To Species Introductions, William K. Annis Jr

All Dissertations

The introduction of nonnative species has facilitated global changes in beta diversity, and these changes have been coined biotic homogenization (loss in beta diversity) and differentiation (gain in beta diversity). Homogenization represents a key conservation threat. Therefore it is imperative to understand the processes that allow nonnative species to establish and how these species contribute to beta diversity change. In this dissertation, I assess three key challenges exist in our ability to address these goals. One challenge is that we have inconsistent support among hypotheses of invasion drivers due to context dependency. Context dependency can arise due to differences in …

Ecological Specialisation Of Reef Fishes Peaks In Global Biodiversity Hotspots, Zoé Delecambre, Renato A. Morais, Alexandre C. Siqueira, Emma Paul Costesec, Caroline E. Dubé, Sergio R. Floeter, Alan M. Friedlander, Fabien Leprieur, Yves Letourneur, Lucas T. Nunes, Jordan M. Casey, Valeriano Parravicini

Research outputs 2022 to 2026

Aim: The role of ecological specialisation in shaping biogeographic and evolutionary patterns remains unresolved. To date, few studies have quantitatively examined consumer niche breadth at a global scale. We describe global biogeographic and diversification patterns of specialisation, measured using trophic and thermal niches, for a highly diverse assemblage of consumers: reef fishes. First, we investigated the confluence of specialisation with global biogeographic patterns in species richness and reef area. Then, we tested whether these patterns could be explained by differences in diversification rates and geographic ranges. Location: Tropical reefs across the globe. Time Period: Present. Major Taxa Studied: Reef fishes. …

A Population Study Of The Freshwater Turtles Of The Recently Expanded Lake Hydaway In Campbell County, Virginia, Joshua Sorenson

Senior Honors Theses

Freshwater turtles are an important part of the ecological systems in central Virginia. At the recently expanded Lake Hydaway, there are several turtle species for which their population characteristics were unknown, especially the prolific Eastern Painted Turtle (Chrysemys picta picta) and Red-bellied Cooter (Pseudemys rubriventris). For five weeks, the lake was surveyed for turtles using hoop nets, and the turtles were marked and measured. Population characteristics such as carapace length and sex ratio for the Eastern Painted Turtle and Red-bellied Cooter were calculated, as well as population estimates for those two species. The Red-eared Slider ( …

Finding Patterns In Disturbance: Modeling Ecosystem Recovery Using A Machine Learning Approach, Paden D. Allsup

Theses and Dissertations

Some of the most visible effects of Anthropogenic climate change are shifts in resource (water) availability, and disturbance regimes across the world. Ecosystems across the world are now being forced to adapt to amplified disturbances, or in some cases, completely new disturbance types. These shifts have major implications for ecosystem stability and functioning, and more broadly for nutrient cycling across the world. In the western USA, wildfire is playing a larger and more dramatic role than before, altering vegetation communities, landscape stability, and soil and stream chemistry. While fire has always played an important role in semi-arid ecosystems, the scale …

Restoring Exotic Cool-Season Grass Dominated Landscapes With Clethodim And Glyphosate, Eleanor J. Muzzy, Joshua D. Wiese, Abraham J. Kanz

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

A major threat to grasslands around the world is the spread of exotic cool-season grasses (ECSG). ECSG dominate vegetative communities and degrade critical habitats. One of the most common methods to treat ECSG is herbicide. To compare how the widely-used, non-specific herbicide glyphosate compared to the grass-specific herbicide clethodim, we conducted a fall spray in November 2023 at two different sites located in the Central Platte River Valley of Nebraska. The following June, we used a modified Daubenmire frame sampling method to gather data on relative cover, species richness, and community composition. After analysis, glyphosate appeared to be more effective …

First Record Of Corella Japonica In California, Lauren M. Stefaniak, Marie L. Nydam, Susanna López-Legentil

Marine Science

Many ascidian (sea squirt) species are common members of fouling communities, particularly on floating substrates such as docks and pilings and through maritime transport, have been introduced worldwide. For the past 30 years, marinas in Southern California have been regularly monitored for introduced species due to their proximity to the international shipping terminals in Los Angeles and Long Beach Harbors. Here, we report on the first record in the eastern Pacific of an ascidian in the family Corellidae (O. Phlebobranchia), Corella japonica, found at the Newmarks Yacht Centre in Los Angeles Harbor. This study further highlights the importance of continuously …

Contribution To The Knowledge Of Cave-Dwelling Fauna From The Prokletije Mountains, Joanna Kocot-Zalewska, Iwona Słowińska, Paweł Domagała, Jakub Bienias, Dominik Szymański, Dawid Szymański, Hubert Szymański, Paweł Sienkiewicz, Andrzej Józef Woźnica

International Journal of Speleology

The article presents the results of the study on invertebrate fauna inhabiting caves in the Prokletije Mountains. This mountain range is located on the border of Montenegro, Albania, and Kosovo. During the expeditions to Albania in 2021 and to Montenegro in 2022–2023, 17 caves and one bauxite mine were visited altogether. All the studied caves are located very high, above 1,700 m a.s.l., where the temperature inside is low, and several are filled with ice or snow. During the Albanian expedition 102 arthropods have been collected altogether. Among these were 19 beetles (Coleoptera), 44 flies (Diptera), three crickets (Orthoptera), five …