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A Hybrid First Year Science Course For Engineering Students – Integrating Biology With Chemistry, David Harding, Pauline Schwartz, Jean Nocito-Gobel, Agamemnon Koutsospyros

Civil Engineering Faculty Publications

Biology is playing an increasingly important role in many engineering fields. With the typical engineering program already having a high credit hour requirement, the question becomes, how to best integrate biology concepts into a packed engineering curriculum. A typical biology course is not likely to introduce the important concepts of biology to engineering students. The solution here is to develop a hybrid course that integrates chemistry and biology. In the course, Chemistry with Applications to Biosystems, the concept is to develop a course that integrally links important concepts of chemistry and biology. The course focuses on the areas of biology …

Molecular Analysis Of Arabidopsis Thaliana Genes Involved In Stress Response, Jessica M. Whitlock

Renée Crown University Honors Thesis Projects - All

Arabidopsis thaliana is an excellent model plant to study various plant processes, including plant’s response to environment, its interactions with other organisms, etc. In this study I characterized eight Arabidopsis genes that are likely to regulate plant’s responses to biotic and abiotic stresses. Microarray analysis was done previously in our lab to identify Arabidopsis genes that are differentially expressed in response to various biotic and abiotic stresses and several plant hormones. The biotic stresses include bacterial, fungal and viral pathogens (both virulent and avirulent strains), sucking and chewing insects. The abiotic stresses include chemicals that induce variety of oxidative stresses …

Reproductive Cycles Of The Pearl Oysters, Pinctada Fucata (Gould) And Pinctada Margaritifera (Linnaeus) (Bivalvia: Pteriidae) In Southwestern Taiwan Waters, Jiuan-Jiuan Hwang

Journal of Marine Science and Technology–Taiwan

The reproductive cycles of the pearl oysters Pinctada fucata (Gould) and Pinctada margaritifera (Linnaeus) were examined based on 339 and 284 specimens, collected in southwestern Taiwan. Except for the month of December 2002, Pinctada fucata were collected during the periods from March 2002 to September 2003. Pinctada margaritifera were collected over two periods: from March 2002 to November 2002 and from June 2003 to September 2003. Histological observations on gonadal development indicated that Pinctada fucata and Pinctada margaritifera were protandrous hermaphrodites, and both species exhibited different annual cyclical patterns, in which maturity peaked in May and October for Pinctada fucata, …

Bionomic Studies Of Papilio Demoleus Linnaeus, The Citrus Butterfly, (Lepidoptera: Papilionidae), From Lower Sindh, Pakistan, Arshad Munir, Nikhat Yasmin Siddiqui, Muhammad A. Rafi, Harry Pavulaan, David Wright

The Taxonomic Report of the International Lepidoptera Survey

Biological parameters of Papilio demoleus Linnaeus, the Citrus Butterfly, in Tando Muhammad Khan, lower Sindh, Pakistan are presented. This major agricultural pest was reared on Murraya koenigii (L.) Spreng. (Curry Leaf) and ten different varieties of Citrus sp. (Citrus) plants. The length of the adult mating period ranged 5 to 8 hours. Following mating, females laid 27.7 ± 3.3 eggs. Eggs hatched in 1.5 to 7 days. Mean durations of larval instars were 1.8 ± 0.1 (minimum) and 2.9 ± 0.1 (maximum) days respectively. Pupal duration was 5.5 to 20 days. Biotic factors including predators [praying mantis, ants, Common Garden …

Investigation Of The Summer Kara Sea Circulation Employing A Variational Data Assimilation Technique, G. Panteleev, A. Proshutinsky, M. Kulakov, Dmitri A. Nechaev, W. Maslowski

Faculty Publications

[ 1] The summer circulations and hydrographic fields of the Kara Sea are reconstructed for mean, positive and negative Arctic Oscillation regimes employing a variational data assimilation technique which provides the best fit of reconstructed fields to climatological data and satisfies dynamical and kinematic constraints of a quasi-stationary primitive equation ocean circulation model. The reconstructed circulations agree well with the measurements and are characterized by inflow of 0.63, 0.8, 0.51 Sv through Kara Gate and 1.18, 1.1, 1.12 Sv between Novaya Zemlya and Franz Josef Land, for mean climatologic conditions, positive and negative AO indexes, respectively. The major regions of …

A Sustainable Future For Fishing On Christmas Island. A Draft Five-Year Strategy For Managing Commercial, Recreational And Charter Fishing., Department Of Fisheries Western Australia.

Fisheries Management Papers

This draft strategy was developed by the Department of Fisheries, Western Australia, hereafter known as the “Department of Fisheries” which has responsibility for managing fish resources (within Territorial waters out to 12 nautical miles) on behalf of the Commonwealth Department of Transport and Regional Services (DoTARS), through the applied Fish Resources Management Act (FRMA) (WA)(CI) (the “Applied Act”). The Applied Act provides a legislative framework that allows for management arrangements to be developed specifically for Christmas Island. The management of fisheries in Western Australia uses an adaptive approach which balances the need for the effective management of fish stocks with …

Shark Bay Prawn And Scallop Fisheries. Draft Review Report, Department Of Fisheries Western Australia

Fisheries Management Papers

In recent times, the Department of Fisheries has received representations from both sectors about the ongoing interaction of the fisheries and their respective management settings. As a result, a decision was made to comprehensively review the fisheries, taking into account matters of fishery sustainability and gear interactions, together with industry economics and market considerations. The review has also addressed research requirements to ensure an appropriate scientific basis for decision-making into the future.

American Society Of Parasitologists Newsletter, V. 29, No. 1, Spring 2007, Scott Lyell Gardner

American Society of Parasitologists: Newsletter

An issue of the American Society of Parasitologists' quarterly newsletter, also called the Journal of Parasitology Newsletter.

Retrocyclin Rc-101 Overcomes Cationic Mutations On The Heptad Repeat 2 Of Hiv-1 Gp41, Christopher Fuhrman

Electronic Theses and Dissertations

Retrocyclin RC-101, a θ-defensin with lectin-like properties, potently inhibits infection by many HIV-1 subtypes by binding to the heptad repeat (HR)-2 region of gp41 and preventing six-helix bundle formation. In the present study, we used in silico computational exploration to identify residues of HR2 that interacted with RC-101 and then analyzed the HIV-1 Sequence Database at LANL for residue variations in the HR1 and HR2 segments that could plausibly impart in vivo resistance. Docking RC-101 to gp41 peptides in silico confirmed its strong preference for HR2 over HR1, and implicated residues crucial for its ability to bind HR2. We mutagenized …

Adaptive Trade-Off In Floral Morphology Mediates Specialization For Flowers Pollinated By Bats And Hummingbirds, Nathan Muchhala

Biology Department Faculty Works

No abstract provided.

Role Of Laminins In The Development Of The Peripheral Nervous System, Wei-Ming Yu

Student Theses and Dissertations

To investigate the function of laminins in peripheral nerve development, the laminin γ1 gene was specifically disrupted in Schwann cells. Disruption of laminin γ1 gene expression resulted in depletion of all other laminin chains known to be expressed in Schwann cells. Schwann cells lacking laminins fail to differentiate to myelinating and non-myelinating Schwann cells and do not extend processes required for initiating axonal sorting and mediating axon-Schwann cell interactions. These cells also fail to down-regulate Oct-6 and they arrest at the premyelinating stage. Impaired axon-Schwann cell interactions prevent phosphorylation of β-neuregulin-1 receptors, which results in decreased cell proliferation. Postnatally, laminin-null …

Whale Sharks Of The Western Caribbean: An Overview Of Current Research And Conservation Efforts And Future Needs For Effective Management Of The Species, Rachel T. Graham

Gulf and Caribbean Research

Whale sharks (Rhincodon typus) are seasonal visitors to four sites in the Western Caribbean, 3 of which are encompassed by the Mesoamerican Barrier Reef. Predictable encounters with the world's largest fish have raised this species' profile globally and led to several research and conservation efforts that aim to elucidate the need for information for the species management and balance the growing demand for highly lucrative encounter tourism. Tagging studies have demonstrated that the whale shark population is relatively small and likely forms a single population. Individuals move throughout the region between 3 of 4 known feeding sites and …

Fish And Wildlife Benefits Associated With Wetland Establishment Practices, Charles A. Rewa

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Efforts to establish wetlands through restoration and creation actions have increased in recent decades in response to regulatory and voluntary incentive programs. This paper summarizes the findings of studies conducted to document fish and wildlife response to these practices. The majority of published studies describe bird response to wetland restoration, with most reporting bird communities in restored wetlands to be similar to those of natural reference wetlands. Studies also indicate that invertebrates and amphibians generally respond quickly to and colonize newly established wetland habitats. Key factors reported as correlated with wildlife species richness include wetland size, availability of nearby wetlands …

Whole Genome Duplications And Contracted Breakpoint Graphs, Max A. Alekseyev, Pavel A. Pevzner

Faculty Publications

The genome halving problem, motivated by the whole genome duplication events in molecular evolution, was solved by El-Mabrouk and Sankoff in the pioneering paper [SIAM J. Comput., 32 (2003), pp. 754–792]. The El-Mabrouk–Sankoff algorithm is rather complex, inspiring a quest for a simpler solution. An alternative approach to the genome halving problem based on the notion of the contracted breakpoint graph was recently proposed in [M. A. Alekseyev and P. A. Pevzner, IEEE/ACM Trans. Comput. Biol. Bioinformatics, 4 (2007), pp. 98–107]. This new technique reveals that while the El-Mabrouk–Sankoff result is correct in most cases, it does not hold in …

Fisheries Ecology Abstracts

Gulf and Caribbean Research

Abstracts of presentations from the Large Pelagic Fishes Symposium in Belize City, Belize during November 2006.

The Influence Of Adenoviral Infection And The Group Via Calcium-Independent Phospholipase A2 On Hepatic Lipid Metabolism, William Palmer Wilkins Iii

Theses and Dissertations

Sterol regulatory element-binding proteins (SREBP) are transcription factors that regulate genes involved in lipid metabolism especially in the liver. Therefore, hepatic SREBP is significant regulator of systemic lipid metabolism. Evidence demonstrates that insulin and dietary unsaturated fatty acid (UFA) regulate SREBP1 expression and subsequent SREBP1-mediated gene transcription, events that in many instances result in modulation of systemic fatty acid and triglyceride (TG) homeostasis. A series of investigations was designed to uncover novel regulators of SREBP1. Dietary and exogenous addition of UFA has been shown to regulate SREBP function yet, an endogenous source of UFA capable of modulating SREBP remains elusive. …

Drive-By Netting: A Technique For Capturing Grebes And Other Diving Waterfowl, Joe N. Caudell, Michael R. Conover

Human–Wildlife Interactions

We describe a new method (drive-by netting) for capturing grebes (Podiceps spp.) and other birds that dive under water to escape capture. We used a floating gill net to capture 203 eared grebes (Podiceps nigricollis) in 20 days in 1999 on the Great Salt Lake (GSL), 652 eared grebes in 41 days on the GSL in 2000, and 409 grebes in 20 days in 2001. Other species captured during the 2000 and 2001 fi eld seasons included 1 western grebe (Aechmophorus occidentalis), 9 ruddy ducks (Oxyura jamaicensis), and 1 Canada goose (Branta …

Light Environment And Seasonal Dynamics Of Microalgae In The Annual Sea Ice At Terra Nova Bay, Ross Sea, Antarctica, L. Lazzara, I. Nardello, C. Ermanni, O. Mangoni, V. Saggiomo

OES Faculty Publications

We investigated the physical conditions of the Spring pack ice environment at Terra Nova Bay to understand their influence on the structure and physiology of sympagic microalgae. Bio-optical methods were used to study the availability and spectral quality of solar radiation, both inside and underneath the ice cover. Pack ice thickness was around 2.5 m, with a temperature between -2 and -7°C. On average, only 1.4% of surface PAR penetrated to the bottom ice and less than 0.6% below platelet ice level. Surface UV-B radiation under the bottom ice was 0.2-0.4%. Biomass concentrations up to 2400 mg Chl a m- …

Integration Without Unification: An Argument For Pluralism In The Biological Sciences, Sandra D. Mitchell, Michael R. Dietrich

Dartmouth Scholarship

In this article, we consider the tension between unification and pluralism in biological theory. We begin with a consideration of historical efforts to establish a unified understanding of evolution in the neo‐Darwinian synthesis. The fragmentation of the evolutionary synthesis by molecular evolution suggests the limitations of the general unificationist ideal for biology but not necessarily for integrating explanations. In the second half of this article, we defend a specific variety of pluralism that allows for the integration required for explanations of complex phenomena without unification on a large scale.

Phylogeographic Analyses Of Obligate And Facultative Cave Crayfish Species On The Cumberland Plateau Of The Southern Appalachians, Jennifer Elizabeth Buhay

Theses and Dissertations

Cave systems and their unique biota are widely viewed as highly endangered, yet very little is known about basic life history, ecology, distributions, habitat requirements, and evolutionary relationships of subterranean species. The crux of the problem in cave studies is the assumption that traditionally defined morpho-species represent distinct evolutionary lineages. Convergence is exhibited in the morphologies of many animal groups, vertebrate and invertebrate, which leads to confusion in diagnosing species' boundaries, geographic distributions, gene flow routes, and imperilment. This dissertation research includes phylogeographic analyses of freshwater cave-dwelling crayfishes in the Southern Appalachians, a global hotspot of subterranean biodiversity. By examining …

Systematics Of The Sympetrine Dragonflies With Emphasis On The Phylogeny, Taxonomy, And Historical Biogeography Of The Genus Sympetrum (Odonata: Libellulidae), Erik M. Pilgrim

Biology

Within dragonflies and damselflies, the family Libellulidae is the largest. The systematics have never been analyzed in a phylogenetic context. Using both molecular and morphological characters, this dissertation is the first study to address the phylogenetics of the Libellulidae, the phylogenetics and historical biogeography of Sympetrum, and several species-level disputes within Sympetrum. Phylogenetic study of the family Libellulidae revealed that many of the libellulid subfamilies (Brachydiplactinae, Leucorrhininae, Sympetrinae, Trameinae, Trithemistinae, and Urothemistinae) were paraphyletic. Wing venation characters were not useful for delineating the hierarchy of taxa within Libellulidae. Study of the systematics of Sympetrum shows that S. navasi …

Comparative Genomic Analyses And Expression Of A Set Of Overlapping Open Reading Frames Of Frog Virus 3, Type Species Of Ranavirus (Family Iridoviridae), Wendy Guat Hoon Tan

Dissertations

Frog virus 3 (FV3) is the type species member of the genus Ranavirus (family Iridoviridae ). To better understand the molecular mechanisms involved in the replication of FV3, including transcription of its highly methylated DNA genome, the complete nucleotide sequence of the FV3 genome has been determined. The FV3 genome is 105, 903 base pairs long excluding the terminal redundancy. The G+C content of FV3 genome is 55% and it encodes 98 non-overlappingpotential open reading frames (ORFs) containing 50 to 1293 amino acids. Eighty-four ORFs have significant homology to known proteins of other iridoviruses, whereas 14 are unique FV3 ORFs. …

Development Of Self-Assembled Monolayer-Based Cell Culture Platform Towards Fabrication Of A Three-Dimensional Bioreactor, Rajendra Kandoor Aithal

Doctoral Dissertations

The extracellular matrix (ECM) plays an important role in regulating a number of cellular properties and functions like cell differentiation, cell synthesis and degradation, cell viability and proliferation, cell function, and cell aging. Surface modification of planar substrates with self-assembled monolayers (SAMs) is a promising technique to achieve stable ECMs.

In this work, substrates such as silicon (Si), gallium arsenide (GaAs) and indium tin oxide (ITO) substrates were modified with SAMS containing amino (-NH2), methyl (-CH3), thiol (-SH) and carboxylic (-COOH) end groups and characterized using contact angle measurements, surface infrared (IR) spectroscopy and atomic force microscopy (AFM). Different cell …

Predicting Liana Crown Location From Stem Diameter In Three Panamanian Lowland Forests, Brian P. Kurzel, Stefan A. Schnitzer, Walter P. Carson

Biological Sciences Faculty Research and Publications

In three forests that differed in annual rainfall and seasonality, the probability of a liana with a stem ≥2.0 cm stem diameter reaching the canopy was >50 percent. Lianas reached the canopy at significantly smaller size‐classes (1.5 cm) in the wet aseasonal forest, suggesting that this estimate changes with forest type. Nevertheless, as a general rule, we suggest that 2.0 cm is the minium stem diameter to examine the abundance and diversity of canopy lianas or canopy competition between lianas and trees.

Recommendations And Goals For Evo-Devo Research, Michael J. Frohlich

Aliso: A Journal of Systematic and Floristic Botany

The rapidly growing field of evolutionary-developmental biology (evo-devo) arises from the fusion of formerly disjunct scientific disciplines that traditionally generate very different scientific products. What should the scientific product of evo-devo be? I propose it should be a testable evolutionary scenario. Evolutionary scenarios have suffered eclipse and even opprobrium in recent years, but analysis of genes that control development may make evo-devo scenarios testable, hence scientifically valid. Hypothesis-based studies are more likely than descriptive studies to generate testable evolutionary scenarios. Candidate-gene studies are risky if only one or a few genes are known in the pathway that is putatively responsible …

Molecular Phylogentics Systematics In Dendrobieae (Orchidaceae), Mark A. Clements

Aliso: A Journal of Systematic and Floristic Botany

Molecular systematic research, using DNA sequences of the internal transcribed spacer (ITS) region of the 18-26S nuclear ribosomal repeat unit, was conducted on a broadly representative sample of the tribe Dendrobieae. The results provide independent support, in addition to evidence from plastid DNA analysis and morphology, for the phylogenetic reassessment of the taxon. At a broad level, Dendrobieae are polyphyletic with Dendrobium sect. Oxystophyllum being deeply embedded within one of the outgroup taxa, subtribe Eriinae: Podochileae. The remaining taxa form a weakly supported monophyletic group consisting of three major clades, Epigeneium, sister to predominantly Asian and Australasian clades. This author …

Corticotropin-Releasing Factor Within The Central Nucleus Of The Amygdala Mediates Enhanced Ethanol Self-Administration In Ethanol-Dependent Rats During Withdrawal., Laura O'Dell

Departmental Papers (Psych)

No abstract provided.

Proceedings Of The Western Australian Dhufish Workshop 2004, Mark Pagano, Terry Fuller

Fisheries Occasional Publications

The Western Australian Dhufish Workshop 2004 was a joint project between Recfishwest and the Western Australian Department of Fisheries.

The workshop incorporated presentations from the Department of Fisheries, Recfishwest, the Western Australian Fishing Industry Council, Murdoch University and Challenger TAFE to showcase current knowledge relating to the iconic dhufish in Western Australia. The perspectives of a recreational fisher, a commercial wetline operator and a metropolitan charter boat operator were also presented.

Through information sharing and discussion the workshop provided a platform to better understand the fundamental issues that underpin current and future management arrangements for this valuable resource. Both commercial …

Integration Without Unification: An Argument For Pluralism In The Biological Sciences, Michael Dietrich, Sandra D. Mitchell

Dartmouth Scholarship

In this article, we consider the tension between unification and pluralism in biological theory. We begin with a consideration of historical efforts to establish a unified understanding of evolution in the neo-Darwinian synthesis. The fragmentation of the evolutionary synthesis by molecular evolution suggests the limitations of the general unificationist ideal for biology but not necessarily for integrating explanations. In the second half of this article, we defend a specific variety of pluralism that allows for the integration required for explanations of complex phenomena without unification on a large scale.

Agrobacterium Tumefaciens-Mediated Transformation Of Tobacco (Nicotiana Tabacum L.) Leaf Disks: Evaluation Of The Co-Cultivation Conditions To Increase Beta-Glucuronidase Gene Activity, Sunjung Park

LSU Master's Theses

Agrobacterium tumefaciens-mediated transformation is generally used for genetic transformation of higher plants. Several experimental factors important for the increase of beta-glucuronidase (GUS) reporter gene activity were evaluated in this study using leaf disks of tobacco (Nicotiana tabacum L. cv. Xanthi). We found that co-cultivation temperature at 20C is the most critical factor to obtain the reproducible enhancement of GUS activity. pCAMBIA 1305.01 resulted in higher GUS activity than the other two pCAMBIA vectors 1301 and 1305.02. The highest GUS activity and transformation efficiency were achieved under the following experimental conditions: Agrobacterium tumefaciens strain LBA4404 containing pCAMBIA1305.01 was grown overnight at …