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Effect Of Accelerated Adaptation Programs On Feedlot Performance And Health Of Steers Drenched With Megasphaera Elsdenii And Quantifying And Partitioning Multi-Year Carbon Dioxide And Methane Fluxes In A Grazed Temperate Pasture, Rebecca Mcdermott

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

With strong consumer demand for beef and increasing concern about the environmental impacts of beef production, improving production efficiency and advancing the understanding of the environmental footprint are critical for the long-term sustainability of beef production systems. The first experiment evaluated the effect of accelerated adaptation strategies, using energy intake and cattle behavior, on feedlot performance, carcass characteristics, and health of yearling steers drenched with exogenous Megasphaera elsdenii. Accelerated adaptation programs (0, 7, or 14 d transition to 100% finisher) were compared to a traditional 21-d adaptation. Dry matter intake responded quadratically across treatments, with the greatest intake observed in …

Quantifying Genetic Diversity In Nematode Feeding Rate, Jacob King

Honors Theses

Understanding how populations persist under changing environmental conditions is a central question in ecology and evolutionary biology. Variation in traits related to resource acquisition may play a key role in determining population survival when resources are limited or fluctuate over time. In this study, I investigated how variation in feeding-related traits influences population persistence using a combination of computational modeling and laboratory experiments. I developed a stochastic, individual-based consumer–resource model to simulate population dynamics across varying levels of trait variance and resource regimes. Across 60,000 simulated populations, increased trait variation consistently reduced extinction risk and extended persistence time, although the …

Pest Risk Modelling For Climate-Smart Vegetable Production In East Africa, Marc Marin Agbodjan, Komi Mensah Agboka, John Odindi, Elfatih Abdel-Rahman, Onisimo Mutanga, Frank Chidawanyika, Chrysantus Tanga, Daniel Munyao Mutyambai, Sevgan Subramanian, Bonoukpoè Mawuko Sokame

All Peer-Reviewed Publications

Agricultural productivity in East Africa is increasingly threatened by climate-sensitive insect pests. This study investigates the occurrence of key vegetable pests: Brevicoryne brassicae, Plutella xylostella, Maruca vitrata, and Liriomyza mik. A comparative species distribution modelling evaluated pest risk projections under climate change. Four variable selection strategies were tested: case 1 (correlation and variance inflation factor [VIF] filtering across all predictors), case 2 (correlation and VIF filtering of bioclimatic variables merged with other predictors), case 3 (filtering based on environmental values at species occurrence point to approximate realized niches), and case 4 (dimensionality reduction using principal component analysis). These strategies were …

Bioinformatic Resolution Of Candidate Stress-Response Homologs In Cryptosporidium Parvum: P53-Family Vs Sestrin Identity, Freeman Tobechukwu Ezeala Mr.

Biochemistry and Molecular Biology

Cryptosporidium parvum is an apicomplexan protozoan of major public-health importance, but accurate genome annotation in this organism remains difficult because of its compact genome, deep protein divergence, and the presence of compositionally biased or low-complexity regions that can mislead similarity-based analysis.

In this thesis, I examined one such annotation problem involving a conserved Cryptosporidium stress-response candidate protein, CPATCC_0028580_t1 (833 aa). The central question was whether this protein is better interpreted as a member of the p53 family, based on similarity to p53-like DNA-binding domains (PF00870), or as a member of the Sestrin family associated with the PA26 domain.

I explored …

Discovering The Southern Appalachian Grassy Balds, Nicholas Lenze

Caravel Undergraduate Research Journal

Grassy balds are unique Appalachian wonders, open meadows in the mountains where, ecologically, there should be trees. It has been hypothesized that some of the balds originated more than ten thousand years ago and were kept open by the grazing of large herbivores such as the mastodon and the wooly mammoth. Over the course of earth’s history, environmental and anthropogenic factors have shaped, modified and maintained the balds. Up to one hundred grassy balds were once recognized to exist in the southern Appalachians, but fewer exist today due to forest succession (Gersmehl, 1970). Collectively, the grassy balds share a common …

The Cranial Morphology Of Large Wild Versus Captive Felids, Bryttin Boyde, Hannah Selvey

Caravel Undergraduate Research Journal

Studies have shown that carnivores in captivity that are fed soft diets have more periodontal problems and that the morphology of their skeletons, skulls specifically, responds to environmental and behavior factors. Considering that captive diet affects teeth and gums, we have conducted research on Dr. Adam Hartstone-Rose’s hypothesis that variation will also be discernible through the examination of cranial morphology. We compared captive and wild lions Panthera leo and tigers Panthera tigris to see if differences were present, then analyzed data collected by a microscribe using a 3D morphometric analysis program. Next, Principal Component Analysis was completed to account for …

Nitrogen-Use Efficiency Of Irrigated Rhodes Grass In Northern Wa, Carla Milazzo, Christopher Ham, Geoff Moore

Grain and other field crops research reports

Cultivation of irrigated fodder and forage crops to intensify northern beef production in the west Kimberley and Pilbara has seen significant private investment over the past decade. To support this growing investment, the Department of Primary Industries and Regional Development (DPIRD) carried out replicated, randomised trials on irrigated Rhodes grass near Broome.

High nitrogen (N) inputs are required for subtropical grasses to achieve annual growth rates of up to 40 t DM/ha and there is growing scrutiny of these systems to prevent nutrient losses to groundwater and downstream ecosystems. The research aimed to establish N (urea) response curves to five …

Exploring Microbiome Communities Of Two Belize Coral Species Five Years After Reciprocal Transplant, Lily E. Kratz

Biology Honors Papers

Coral holobionts, which include the coral animal host, dinoflagellate algae, bacteria, etc., support coral reef biodiversity by providing habitat to many marine species. In the face of global change, identifying and understanding the microbial diversity of corals is extremely important because their survival indicates overall ocean health. Coral-associated bacterial and algal communities contribute to the health and survival of a coral species through creating resistance to stressors and supplying essential nutrients. As coral reef environments continue to change, microbial communities must respond to ensure the survival of reef-building corals. To investigate if coral microbiomes possess the ability to acclimatize to …

Bats In A Modified Suburban Landscape, Brittany Morgera

Biology Honors Papers

This research assesses bat species richness and activity across a gradient of suburban habitat modification surrounding Ursinus College and Green Lane Park in Montgomery County, located in southeastern Pennsylvania. Habitat modification was quantified using GIS-based land-cover metrics (e.g. impervious surfaces and canopy cover), and bat activity and species richness were measured though acoustic surveys conducted at 15 sites during the summers of 2024 and 2025. The project tests the hypothesis that increasing habitat modification has a negative correlation with bat species richness and activity.

Neural Mechanisms Underlying Jung’S Active Imagination: A Review And Hypothesis, Charles R. Fox

Journal of Conscious Evolution

Active imagination is a key technique of Jungian analysis. Despite its centrality, and its potential importance beyond Jungian psychology to the area of systems neuroscience, psychology, and consciousness studies, there are no known neurological mechanisms underlying this psychological phenomenon. There is a history of using the types of mental imagery used in active imagination to explore consciousness. The development and use of active imagination is briefly reviewed, and a case is developed that the neurology underlying active imagination would be fruitfully explored by considering it a special case of mystical experience. Active imagination primarily uses the right hemisphere processing of …

Evaluation Of Subtropical And Tropical Perennial Grasses For Irrigated Fodder In Northern Wa, Carla Milazzo, Samuel Crouch, Christopher Ham, Geoff Moore

Grain and other field crops research reports

• Under irrigation, varieties of Rhodes grass (Chloris gayana) and panic grass (Megathyrsus maximus) grew more than 110 kg/ha dry matter per day, when averaged over a year, equal to more than 40 t/ha dry matter annually. Digit grasses (Digitaria spp.) were significantly lower yielding.
• Daily growth rates were affected by seasonal conditions and ranged from 60–90 kg/ha in Barrgana season (June–August) to 110–170 kg/ha in Wirlburu-Laja (September–November). Panic grass was slightly more sensitive to cool temperatures than Rhodes grass.
• Subtropical grasses outperformed tropical grass varieties such as Jarra grass, which had very low growth during the cool months (June–July).
• Crude …

Red Lines, Green Blooms: Assessing The Effects Of Historical Environmental Disparity On Algal Communities In The Twin Cities, Mn, Georgia C. Akins

Environmental Studies Honors Projects

Redlining, a discriminatory housing policy from the 1930s, shaped lastng urban inequalites that may extend to environmental conditons. This study examines links between redlining and urban water quality in the Twin Cites using algal communites as indicators. Across 28 water bodies sampled in 2022 and 2024, physical, chemical, and biological metrics were compared by redlining grade. Results show limited relatonships between redlining and most variables, with only surface water temperature differing significantly. Nutrients and algal diversity were unrelated to redlining, instead reflectng present-day conditons. These findings suggest contemporary factors play a stronger role than redlining in shaping urban freshwater ecosystems.

Employing Zebrafish To Understand Genetic Drivers Of Epilepsy-Related Comorbid Behaviors, Chinwendu Ononuju, Kharma Hall, Olivia Beatty, Scott C. Baraban, Colleen Carpenter-Swanson

Biology Faculty Publications

Children with epilepsy frequently experience a range of significant comorbidities beyond seizures, such as motor dysfunction, cognitive impairment, and neurodevelopmental delays. In some cases, these comorbidities contribute more significantly to overall disease burden than the seizures themselves. To improve quality-of-life (QOL) for these children, treatment options should be selected that control seizures and ameliorate comorbidities. Unfortunately, such therapeutics remain largely elusive. Addressing this issue requires suitable preclinical models. Here we used CRISPR-generated zebrafish with single-gene mutations linked to pediatric epilepsy and applied clinically-relevant behavioral assays to study the effects of these mutations. Using high-throughput locomotion-based assays, we uncovered errors in …

A Jobs-To-Be-Done Framework For Mapping Digital Innovation Opportunities In Climate-Smart Agrifood Systems, Lourival Carmo Monaco Neto, Allan Gray

Department of Agricultural Economics Faculty Publications

The agrifood sector faces well-documented barriers to climate-smart agriculture (CSA) adoption, reflecting systematic difficulty identifying where digital tools address specific stakeholder needs rather than a technology shortage. This paper presents a prescriptive framework for mapping digital innovation opportunities in complex, multi-stakeholder agrifood systems. Grounded in Jobs-to-be-Done (JTBD) theory and structured as a two-dimensional matrix of meta-jobs and value chain segments, the framework was developed through a design science research (DSR) paradigm evaluated on utility, coherence, and actionability. Construction involved a purposive synthesis of three literature streams and iterative refinement through 136 stakeholder engagements within a six-month university-affiliated startup studio cycle. …

Factors Associated With Stunting And Underweight Indices Among Children 0–3 Years In Nairobi, Kenya: A Cross-Sectional Study, Eunice Njoroge, Kevinson Mwangi, Esther Chongwo, Martha Kaniala, Kevin Wekesa, Isaac Lihanda, Vibian Angweny, Rachel Odhiambo, Margaret Kabue, Japhet Adina, Amina Abubakar

Institute for Human Development, East Africa

Background:Childundernutritionremainsoneofthemostpressingglobalpublic health challenges, particularly in low and middle-income countries (LMICs). Most studies focus broadly on children under five, potentially overlooking the unique vulnerabilities a ecting children in the first 1,000 days of life. This study investigated potential factors associated with stunting and underweight malnutritional presentation among children aged 0–3 years in Nairobi City County, Kenya.

Methods: We conducted a cross-sectional study of 2903 caregiver-child dyads living in Nairobi City County to assess stunting [Height-for-Age Z-scores (HAZ)] and underweight [Weight-for-Age Z-scores (WAZ)] using the World Health Organisation (WHO) growth standards among 0–3-year-olds. Child, caregiver, and householdcharacteristicswereincludedinthelinearmixede ects regression models …

Investigating The Effects Of Stress On The Passive Transfer Of Antibodies From Colostrum To The Newborn Calf, Audrey F. Dykes

Animal Science Undergraduate Honors Theses

The objective of the current study was to examine passive transfer of immunoglobulins A (IgA) and G (IgG) to the calf in relation to dam’s fecal cortisol and lactoferrin. In July 2024, late-gestation, Angus crossbred heifers pregnant by artificial insemination (n = 30) were moved to the University of Arkansas Division of Agriculture Stocker Unit and housed in 0.42-ha grass paddocks for each heifer. Calving began in mid-August. Heifers were observed routinely throughout the workday and then at 8 p.m., 12 a.m., and 6 a.m. After calving, the calf was allowed to stand and suckle once then dam sample collection …

Differences In Local And Systemic Immune Responses To Primary And Secondary Immunizations With The Herpesvirus Of Turkeys (Hvt) Vaccine In Layer Pullets., Allie K. Bowerman

Poultry Science Undergraduate Honors Theses

Marek's disease, caused by a herpesvirus, is a major issue in poultry production due to its high mortality rate. The herpesvirus of turkeys (HVT) vaccine has been used as a crucial measure to mitigate outbreaks of Marek's disease in poultry production; however, little is known about the immune response to the HVT vaccine. In this study, we examined how primary and secondary intradermal (i.d.) vaccination with the HVT vaccine in the growing feather (GF) pulp affects local and systemic immune responses, including cellular, antibody, and cytokine responses. Six 9-week-old and six 19-week-old Light-brown Leghorn (LBL) pullets received a primary or …

Changing Dynamics Of Microbial Communities At A Hydrocarbon Contaminated Site And Methanogenic Interactions With Iron Minerals, Jakob Sell

Masters Theses

Microbial life is not only ubiquitous but also plays a critical role in the geochemical makeup of our planet. While researchers have long studied easily culturable aerobic microbes, the influence of anaerobic life on soils and mineral cycling is less understood. Notably, knowledge about interactions between anaerobic microbes and inorganic elements such as iron has progressed with the discovery that magnetite influences how anaerobic archaea carry out methanogenesis. To better understand anaerobic bacterial metabolisms and how they interact with minerals and subsurface hydrocarbons, we extracted 16S rRNA genes from two adjacent subsurface petroleum plumes, sequenced the DNA, and analyzed it …

The Cobalt Curse: Cobalt’S Role And Risks, Marley Jackowitz

Student Theses 2015-Present

This paper examines the hidden environmental, geopolitical, economic, and social costs of the cobalt supply chain. Fueled by the demand for battery technology and electric vehicles, cobalt has become an essential element to the green energy transition. With the largest share of global cobalt deposits, the Democratic Republic of the Congo bears a disproportionate share of the industry’s harms. Cobalt mining in the DRC is marked by environmentally degrading practices and inhumane working conditions, compromising Congolese health, safety, and well-being. Chapter 1 discusses the environmental impacts of DRC cobalt mining and its adverse effects on public health. Environmentally degrading mining …

Consumerism In The Digital Age: Environmental And Cultural Consequences, Danielle Andrea Montoya

Student Theses 2015-Present

Overconsumption has emerged as a significant environmental problem, characterized by persistent patterns of buying, using, and discarding goods at rates that exceed ecological limits. In the digital age, these patterns of consumption are reinforced by economic systems, technological advancements, and cultural norms that make constant consumption feel normal and convenient. While consumption is necessary for everyday life, consumption beyond basic needs contributes to increased waste, resource depletion, pollution, and climate change. Overconsumption is embedded in daily habits such as online shopping, food consumption, and frequent product replacement. Therefore, understanding and addressing overconsumption is crucial for achieving environmental sustainability and social …

Odor Vs. Direction Prioritization In Shelter Navigation By The Whip Spider Phrynus Marginemaculatus, Aiden Barno, Daniel D. Wiegmann, Verner Peter Bingman, Sidney Tyler Ley

Honors Projects

Arthropod navigation is known to rely on a variety of multisensory strategies, yet the prioritization of these cues in whip spiders remains poorly understood. This study examined whether Phrynus marginemaculatus prioritizes olfactory cues or idioethic directional cues when the two cues directly conflict with one another. Twelve subjects were trained to associate a shelter with both a specific odor (geraniol or 1‑hexanol) and a consistent directional movement (left or right) from the release site. In a subsequent test trial, odor and direction were dissociated, and subjects’ time spent in front of each shelter was used to determine an association index …

Assessing The Impact Of Toxic Fescue Consumption During Gestation On Muscle Growth Gene Expression And Beef Color Quality Of The Offspring, Madison Blank

Animal Science Undergraduate Honors Theses

Endophyte-infected tall, toxic fescue is the most common forage for beef cattle in the southeastern U.S. However, exposure to this forage causes detrimental effects on the health of gestating cattle. The exposure to toxic fescue during gestation has been shown to impact fetal development during pregnancy and their offspring’s subsequent growth. However, limited information is currently available on the impact of this exposure on the meat quality of the offspring. Our objective is to determine how the dam’s exposure to toxic fescue during gestation impacts the beef color and quality of the final offspring.

A total of 22 animals (11 …

The Evaluation Of Broiler Lines Divergently Selected For Water Conversion Ratio Under Acute And Chronic Stress, Baileigh B. Cash

Poultry Science Undergraduate Honors Theses

            The importance of water conversion ratio in broiler production influences not only bird physiology but also barn environment, litter quality, and provides potential solutions to environmental stressors. However, very little is known about how genetic selection for water conversion ratio can affect litter characteristics and performance parameters, specifically under heat stress conditions. This study evaluates the effects of genetic lines, environmental conditions, and time, on litter and bird performance characteristics in high water conversion ratio (HWCR) and low water conversion ratio (LWCR) broilers. Litter samples were collected from HWCR and LWCR broilers raised under heat-stress and thermal-neutral conditions, both before …

Status Of The Potentially Invasive Australian Redclaw Crayfish (Cherax Quadricarinatus), Margaret (Addie) Munn

Biology Theses

The introduction of invasive species, including crayfish, is common through aquaculture and aquarium trade pathways and is an important factor causing the decline and/or extinction of native species. Invasive species cause billions of dollars in damages annually and threaten almost half of the native species in the United States. Australian Redclaw Crayfish (Redclaws) are a species of large individuals that originated in Australia and New Guinea and have been introduced specifically for aquaculture and the aquarium trade. Redclaws are known to thrive in tropical and subtropical locations. They can tolerate high temperatures and low oxygen and are generalist omnivores that …

The Effects Of Avian Influenza On Consumer Egg Prices In The United States, Jacob B. Franklin

Agricultural Economics and Agribusiness Undergraduate Honors Theses

Outbreaks of highly pathogenic avian influenza (HPAI) create major challenges to poultry supply chains due to the high mortality rates in flocks, leading to disruptions in production and higher costs for producers. Using quantitative data from Federal Reserve Bank of St. Louis, USDA, and National Agricultural Statistics Service, this research analyzes changes in egg production, retail prices, and regional variations throughout the United States for the 2022-2025 HPAI event. A time-series regression model was used to control for production costs, seasonal patterns, and regional differences. All of these measures come together to quantify the impact of HPAI outbreaks on consumer …

Effect Of 1,25(Oh)₂D₃ Glycoside Supplementation Duration On Bacterial Chondronecrosis With Osteomyelitis (Bco) Lameness In Broilers, Zoe R. Zeman

Animal Science Undergraduate Honors Theses

Bacterial chondronecrosis with osteomyelitis (BCO) is a significant cause of lameness in commercial broilers, resulting in substantial animal welfare concerns and economic losses. This study evaluated the effect of 1,25(OH)₂D₃ glycoside supplementation duration on the incidence of BCO-related lameness in broilers. Cobb surplus male broiler chicks were assigned to four treatment groups: a wire-flooring positive control, a litter-flooring negative control, and two treatment groups on litter flooring receiving 1 μg 1,25(OH)₂D₃ as glycosides supplementation per kg diet for either 14 or 28 days. Lameness incidence was recorded from day 22 through day 56, and all lame birds were evaluated for …

Effect Of A Probiotic Microbial Gel Jointly With Two Versions Of Supplemental Direct-Fed Microbials In Receiving Cattle Diets On Growth Performance And Health, John Mitchell

Biological Sciences Undergraduate Honors Theses

The objective was to assess the effect of a probiotic microbial gel (BIOFRESH® Microbial Gel, Agrarian Solutions) administered on arrival in combination with feeding one of two different direct-fed microbials (DFM 365a or DFM 365b, Agrarian Solutions) on the health and growth performance of stocker calves at high risk for bovine respiratory disease (BRD). Beef heifer calves (n = 292, BW = 476 ± 5 lb) arriving on 3 separate receiving dates were used in the 42-day receiving study. On arrival (d -1), heifers were processed, stratified by d -1 body weight, and then assigned randomly to 9 pens (10 …

Stromal Interaction Molecule (Stim) Proteins In Microglia And The Impact On Store-Operated Calcium Entry (Soce) And Spinal Cord Injury Recovery, Norah G. Hill

College of Arts & Sciences Senior Theses

In spinal cord injury (SCI), worsening functional outcomes are largely because of secondary injury processes and prolonged chronic inflammation. A major contributor of secondary injury is overload of intracellular calcium, causing neuronal overexcitation and persistent inflammatory responses. One of the primary mediators of calcium entry into the cell is store-operated calcium entry (SOCE). In SOCE, sensors detecting calcium depletion from the endoplasmic reticulum stores are called STIM proteins (1-2). When calcium is low in the cell, STIM proteins will activate Orai channels to open, allowing for the influx of calcium into the cell. The purpose of this study was to …

Ai×Life 2026: Advances In Computational Biology Across Scales For Life & Health Sciences, Suma Mohan S., Devika N. T., Pranavathiyani G.

Conference Proceedings

Book of Abstracts of the International Conference, AIxLife 2026: Advances in Computational Biology Across Scales for Life & Health Sciences, held on 17–18 April 2026, SASTRA Deemed to be University, Thanjavur, Tamil Nadu, INDIA 

About the Conference

Conventional computational biology laid the foundation for biological data analysis through statistical models, algorithms, and curated databases, enabling insights into genes, proteins, and pathways. Today, the integration of artificial intelligence, spanning machine learning, deep learning, and large language models (LLMs) is driving a transformative shift across biological scales, from atomic and molecular interactions to pathways, cellular systems, organisms, and populations.

AI-powered approaches …

Linking Urban Forest Ecosystem Services With The Sustainable Development Goals: A Bibliometric And Thematic Synthesis (2008–2022), Whisnu Febry Afrianto, Muhammad Ilham

Jurnal Penelitian Kehutanan Wallacea

Despite growing recognition of urban forests as vital providers of ecosystem services (ES) that support the Sustainable Development Goals (SDGs), existing scientific literature remains fragmented and lacks a comprehensive synthesis. This study addresses that gap through a systematic bibliometric analysis of global research on urban forestry ecosystem services published between 2008 and 2022, encompassing 229 articles. The analysis examined the three main classifications of ecosystem services and all 17 SDGs. Publications on urban forestry ecosystem services have shown a steady increase since 2008, peaking between 2018 and 2022, while citation counts reached their highest point in 2012 and gradually declined …