Digital Commons Network^™

Layer Industry Update: Nutrition Associated With Changes In Production Systems, Kenneth E. Anderson, Ishab Poudel

Proceedings of the Arkansas Nutrition Conference

This is not a hardcore research presentation but rather an overview of three North Carolina Layer Performance and Management Tests. I used the 39th, 40th, and 41st Layer Test Reports that cover the years 2013 through 2025. The proceedings cover white and brown egg strains as groups and the cage and cage-free production environments. Over all three of these tests the production environments were the same and met UEP Cage standards and the Humane Farm Animal Care cage-free standards. There are papers outlining the changes in more detail with all the statistics. This is an overview of visual trends in …

Field Experience And Production Challenges In Australia And New Zealand, Nick Rodgers

Proceedings of the Arkansas Nutrition Conference

Variability management represents the primary technical challenge facing the Australian and New Zealand (ANZ) broiler industry's vertically integrated operations. This analysis examines systematic approaches to controlling seasonal performance fluctuations, raw material quality variations, emerging disease pressures, and evolving welfare demands. Key variability sources include climatic extremes, season to season raw material quality and nutrient value variability and intermittent [mostly enteric] disease challenges, particularly in no antibiotics ever (NAE) production systems. Solutions require a scientific, data-driven approach with insights from field experience for causation identification and a collaborative approach within business functional units, and across industry collaborators such as suppliers and …

Propelling Whole-Cell Biosensor Creation By Leveraging Gene Fusion To Assemble Synthetic Functional Transcription Factors For The Detection Of Biomarkers, Samuel J. Verzino

Theses and Dissertations

Biosensors are analytical devices that leverage biological modules for the detection of molecules of interest. As customizable tools designed to aid in a wide array of diagnostics, these instruments are rapidly advancing the field of synthetic biology. While varied in their construction and purpose, biosensors are ultimately concerned with converting a physicochemical stimulus into a detectable signal. Among the many existing variants, whole-cell biosensors (WCBs) stand out due to their versatility and engineering potential. WCBs are a type of biosensor in which a physiologically active cell sustains an array of biomolecular elements - receptors, transporters, regulators, etc. - capable of …

Full Issue, Catalina Cuellar-Gempeler

Humboldt Journal of Microbiology

No abstract provided.

Investigating Health Events In Dairy Cattle, Samantha Blocker

Capstone Projects

This research focuses on identifying the key predictors of mastitis and ketosis in dairy cattle, two common and costly diseases affecting milk production and animal health. The primary objective was to identify significant risk factors and evaluate the predictive performance of modeling approaches.

To analyze these complex relationships, a longitudinal dataset following a large sample of dairy cattle is studying using several advanced methods. Survival analysis techniques, like Kaplan-Meier estimations, help measure how long cows remain free from health issues. The Cox Proportional Hazards (CPH) model complements this approach by identifying risk factors associated with health-related events over time. These …

Climate And Gypsum Parent Material Shape Biocrust Communities And Moss Ecology In The Chihuahuan And Mojave Deserts, Katelyn Gobbie, Nicole Pietrasiak, Brian M. Jusko, Rebecca E. Drenovsky

2025 Faculty Bibliography

Biological soil crust communities (biocrusts) establishing on gypsum soils have been well-documented for their prolific appearance and rich diversity of lichens and bryophytes. However, studies characterizing gypsum biocrusts have occurred primarily outside of the U.S., most of which lack comparisons to other soil types. We conducted intensive field surveys to evaluate the ground cover and frequency of biocrust functional groups and moss species on gypsum and non-gypsum soils in the U.S. regions with the most extensive gypsum outcrops, the northern Chihuahuan and eastern Mojave Deserts. Study sites were stratified by geomorphology and paired, so that every gypsum site was matched …

Determining Localization Of Surf-4 In Drosophila Melanogaster In The Secretory Pathway, Jada Scott

Mahurin Honors College Capstone Experience/Thesis Projects

The purpose of this research is to determine the role of the Surfeit-4 gene, or Surf-4 locus protein, during Drosophila melanogaster development. Surf-4 was identified in the Srivastava lab in a biochemical screen for proteins that associate with the basement membrane (BM): a structure needed and required for normal development and its degradation is a hallmark of tumor metastasis. Surf-4 has been predicted to function within intracellular compartments and is known to be expressed in many parts of the developing fly. We are currently determining why Surf-4 is important in development and what role, if any, it could play during …

Movements And Habitat Use Of Silver Carp In The Arkansas And White River, A. L. Althoff, J. L. Kinschuh, D. K. Owens, Jonathan J. Spurgeon, J. N. Stevens, S. E. Lochmann

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

No abstract provided.

Diversity And Risk Assessment Of Phytophthora Spp. Found On Plant Roots Innative Plant Nurseries And Interstate Shipping Nurseries In California, Rebecca Harkness, Karen Suslow, Supriya Sharma, Monique Sakalidis, Timothy Miles, Wolfgang Schweigkofler

Natural Sciences and Mathematics | Faculty Scholarship

For many nurseries, it is difficult to diagnose Phytophthora-infected plants in time to prevent disease incursion and spread, especially if the infection occurs on roots and causes no or limited symptoms on aerial plant parts. Rapid, accurate, and specific diagnostic methods can facilitate the identification and removal of infected plants. This study was conducted to investigate whether specific nursery types within California are more likely to have different Phytophthora species and which hosts are more likely to test positive for a Phytophthora species using immunological and molecular diagnostic tools. From fall 2016 to spring 2019, we collected 1,180 root samples …

Friend And Foe: Tgf-Beta, Its Role In Tumor Development, And An Analysis Of Chung Et Al. (2018), Yosef Sonbolian

The Science Journal of the Lander College of Arts and Sciences

This paper will analyze an important study performed by Chung et al. (2018) regarding transforming growth factor-beta (TGFbeta), which plays an important role in various cellular processes. Paradoxically, TGF-beta plays a different role in the development of cancer at various points. In early-stage tumors, TGF-beta has been known to inhibit cancer growth, but in later stages, it acts as a cancer promoter. Chung et al. (2018) attempted to ascertain the efficaciousness of the drug Sorafenib in suppressing TGF-beta responses, as well as the ways that this drug achieves its goal and the implications that their findings may have for future …

Behavioral And Physiological Responses Of Heifers With No Prior Exposure And Those Adapted To Grazing Endophyte-Infected Tall Fescue, Tyler A. Purvis

Theses and Dissertations--Animal and Food Sciences

Data from year one of a three-year experiment was used to determine behavioral and physiological responses of heifers adapted to grazing endophyte-infected fescue (E+TF) compared to heifers naïve to grazing E+TF. In May, yearling beef heifers from KY (n=15) and MT (n=30) were stratified by body weight, hair coat score, and disposition into nine pastures and assigned to one of three treatments: KY grazing E+ (KY-E+), MT grazing E+ (MT-E+), or MT grazing endophyte-free tall fescue (E-TF) (MT-E-). Prior to grazing, two heifers per pasture were selected to be outfitted with a RumiWatch® halter (Itin+Hoch GmbH, Liestal, Switzerland) for monitoring …

Assessing Land Suitability For Agroforestry, Huseyin B. Tecimen

Extension Publications

No abstract provided.

Potential Impacts Of Construction On Bat Populations In Warner Parks, Nashville, Tennessee, Jackson Whiteside, Wyatt Fooks, Jeremy Little

Science University Research Symposium (SURS)

Human development continues to alter natural landscapes, often with significant consequences for wildlife populations. Among the most sensitive taxa to such disturbances are bats, which serve vital ecological roles as insect predators, pollinators, and seed dispersers. Because bats depend on specific roosting and foraging habitats, even minor environmental changes can strongly influence their activity and diversity. A new road is proposed through an area of Warner Parks, Nashville, Tennessee which is otherwise untouched. This may affect the biodiversity and the populations of bats as a result. Wildlife Acoustic MiniBat 2 acoustic monitoring equipment was used to gather echolocation calls of …

Effects Of In-Stream Large Woody Debris Management On Riparian Salamander Population Dynamics, Sydney Hermann

Theses, Dissertations and Capstones

The addition of large woody debris (LWD) into streams is an increasingly common habitat restoration method used to support brook trout populations and other sensitive freshwater species. Wood jams create localized reductions of water velocity, increase organic matter retention, intensify overbank flows, and promote habitat heterogeneity. These changes enhance interaction between the floodplain and the stream which can influence forest habitat variables such as leaf litter, soil pH, moisture, and invertebrate abundance. Salamander demographics reflect the stability of these forest habitat variables, and population declines can be indicative of environmental disturbance, stress, or change. Evaluating how this trout-targeted management effects …

Antimicrobial-Resistant Enterococcus In Urban Communities: Insights Into Human Infection Risks, Sumit Kumar Paudel

Wayne State University Dissertations

The complexity of community risk factors and transmission routes has been a major challenge to the containment of community-acquired antibiotic resistance. Possible factors range from environmental contamination, antibiotic misuse, and human exposure via animals, food, the environment, and human-to-human transmission. What has been missing from previous research is the integration of findings in animal and environmental sectors with bacteria implicated in community infections. To gain a better understanding of antibiotic resistance acquired in the community, a one health approach is clearly needed. Specifically, we aim to investigate the prevalence of antibiotic-resistant Enterococcus in wildlife, their gene profiles in comparison with …

Graduate Student Literature Review From "The Development Of The Brouwer Equation To Estimate Heat Production: Past, Present, And Future Perspectives" In Journal Of Dairy Science (2025), Addison L. Carroll, Paul J. Kononoff, Tami M. Brown-Brandl

Department of Animal Science: Faculty Publications

Appendix 1, supplemental to "The development of the Brouwer equation to estimate heat production: Past, present, and future perspectives," Journal of Dairy Science (2025).

Validation Of Non-Invasive Methods For The Measurement Of Gonadal And Inter-Renal Steroid Hormones In A Desert-Adapted Amphibian (Scaphiopus Couchii), Alexander T. Baugh, Callie Cho , '23, Alice Onyango-Opiyo , '23, Sophie A. Rodner , '25, Senna Mieth , '25, Daniel Oakes , '24, Liam Halstead , '25

Biology Faculty Works

For aquatic and semi-aquatic vertebrates like amphibians, it is possible to estimate excreted hormone levels using non-invasive methods such as waterborne and salivary sampling. These techniques allow monitoring of endocrine activity over varying, repeated and simultaneous integration periods while minimizing handling-related stress that can ‘contaminate’ hormone estimates, including estimates of baseline glucocorticoids. Here we have validated the extraction and quantification of three steroid hormones (corticosterone, CORT; 17-b estradiol, E₂; testosterone, TST) in Couch’s spadefoots (Scaphiopus couchii)—a desert-adapted anuran of special interest for physiology, evolution and conservation—using non-invasive waterborne and minimally invasive salivary hormone methods. We combined extraction and …

Leveraging Crispr Technology To Model Beta-Propeller Protein Associated Neurodegeneration And Explore Mechanisms Of Neurological Dysfunction, Brandon Lee Meyerink

Dissertations and Theses

Neurons are highly compartmentalized, specialized cells that are foundational to brain function. Moreover, the neurons we have early in life are the same cells that we carry through our entire life. For these cells to stay healthy and functional over this long period, a process called autophagy is used to clear unwanted, toxic, or unneeded materials from the cell. Alterations in autophagy caused by genetic mutations can lead to the death of neurons and neurodegenerative disease. Here, we use CRISPR technology to genetically modify mouse models to generate a model of autophagy associated neurological disease and study the molecular function …

Recruitment, Reprogramming, And Function Of Trpv1+ Sensory Nerves In The Development And Progression Of Head And Neck Cancer, Anthony Restaino

Dissertations and Theses

Head and neck squamous cell carcinomas (HNSCC) are an epithelial cancer prevalent across the world and are divided into two subcategories: human papillomavirus-mediated (HPV+) and carcinogen-mediated (HPV-) HNSCC. These subgroups have distinct patient populations, divergent responses to therapy, and prognoses, however the foundational mechanisms that facilitate these differences are not well understood or defined. Recently, the presence and function of sensory neurons within the tumor environment of various solid tumors has been identified and investigated. Herein, we identify differences in the presence of TRPV1+ sensory neurons and neuron structures in the tumor environment of HPV+ and HPV- HNSCC, correlating with …

Identification And Characterization Of Novel Crispr-Cas Immune Effectors, Christian Fredrick Baca

Student Theses and Dissertations

Bacteria are under constant threat by the viruses that infect them called bacteriophages or phages for short. It is predicted that phages outnumber bacteria by an order of magnitude, producing a tremendous pressure for resistance mechanisms against this threat. One of the most abundant immune systems bacteria have evolved to combat this are CRISPR-Cas systems, which have been studied extensively due to their fascinating biology and usefulness in biotechnology and therapeutics. My thesis focuses on the discovery and characterization of three new CRISPR-Cas effector proteins that provide immunity in bacteria in response to phage challenge with highly diverse activities. CRISPR-Cas …

Potential Of Anogenital Distance As A Genetic Selection Trait In Canadian Holstein, G.R. Dodd, F.S. Schenkel, F. Miglior, T.C. Bruinjé, M. Gobikrushanth, J.E. Carrelli, M. Oba, D.J. Ambrose, C.F. Baes

Dairy Science and Food Science Faculty Publications: 2022 to Present

Maintaining optimal fertility in dairy cattle herds is a global challenge that is typically addressed through the genetic selection of fertility indicator traits. However, many of the traits currently implemented in breeding programs are heavily influenced by environmental factors, resulting in a slow rate of genetic improvement. Anogenital distance (AGD) has recently emerged as a promising fertility indicator trait due to its association with favorable reproductive outcomes and its higher heritability estimates compared with currently evaluated traits. This study aimed to enhance the understanding of AGD's genetic potential by estimating its genetic parameters in Canadian Holsteins, assessing the reliability …

Validating A Genetic Knockout Of Ninein In A Mouse Model, Jessikah M. Buys, E R. Gnatowski, L Vermuri, A Safeer, L Holmes, M. F. Miles

IRBEH/Spit for Science Publications and Presentations

Ninein (Nin) is a microtubule associated protein that has been previously characterized by the Miles Lab for regulating the anxiety-reducing (anxiolytic) effects of alcohol, which is thought to contribute to development of Alcohol Use Disorder (AUD). Previous studies in the lab have investigated the role of Nin deletion on anxiety and ethanol-related behaviors in a conditional knockout model. The following set of studies seek to validate this genetic model. The model was validated using three main methods: immunofluorescence, qRT-PCR, and gel electrophoresis. In PCR studies, Ninein was significantly reduced in cre-expressing animals compared to controls. Gel Electrophoresis confirmed this reduction …

Effects Of Psychedelics On Acute Nicotine Pharmacological Responses, Aleny Oros, Belle Buzzi, Julian Vaughn, Burhan Buttar, Javier Gonzalez-Maeso, M Imad Damaj

IRBEH/Spit for Science Publications and Presentations

Smoking is a major risk factor for illnesses, such as cancers, cardiovascular diseases and respiratory conditions. In smoking, nicotine activates nicotinic acetylcholine receptors in the brain region. Prolonged use of nicotine will desensitize these specific receptors and cause nicotine dependence, resulting in smokers to experience withdrawal symptoms, such as anhedonia, depression, stress, and craving, leading to relapse.2 As the rate cigarette smoking has declined over the years, it is not significantly entitled by the tremendous increase rate of e-cigarette use. In a previous study being published, life-time use of psychedelics is associated with lower nicotine dependence.1

Psychedelics, specifically psilocybin, which …

Science, Physiology, And Nutrition For The Nonscientist, Judi S. Morrill

Open Educational Resources

A wonderful blend of physiology, nutrition, biochemistry, genetics, biology, evolution, chemistry--what we all need to know as informed citizens. A basic knowledge of the life sciences and how our bodies work--to promote our own good health, especially as we're bombarded with misleading advertisements, soundbites, and the like. DNA fingerprinting, calorie requirements, dietary advice, genetic engineering (including gene editing with CRISPR cas9)--all in an easy-to understand book.

Environmentally Friendly Chelation For Enhanced Algal Biomass Deashing, Agyare Asante, George Daramola, Ryan W. Davis, Sandeep Kumar

Civil & Environmental Engineering Faculty Publications

High ash content in algal biomass limits its suitability for biofuel production by reducing combustion efficiency and increasing fouling. This study presents a green deashing strategy using nitrilotriacetic acid (NTA) and deionized (DI) water to purify Scenedesmus algae, which was selected for its high ash removal potential. The optimized sequential treatment (DI, NTA chelation, and DI+NTA treatment at 90–130 °C) achieved up to 83.07% ash removal, reducing ash content from 15.2% to 3.8%. Elevated temperatures enhanced the removal of calcium, magnesium, and potassium, while heavy metals like lead and copper were reduced below detection limits. CHN analysis confirmed minimal …

Beyond The Byproduct: Exploring Approaches For The Sustainable Valorization Of Underutilized Food Streams, Ian Phillip Israelsen

Graduate Theses, Dissertations, and Problem Reports (ETD)

Commercial food processing creates side-streams that are often underutilized yet hold significant potential for valorization into value-added products for consumer use. This study investigated and compared potential protein recovery and lipid removal potential from buckwheat (BW; Fagopyrum esculentum Moench), brewer’s spent grain (BSG), and coffee silverskin (CSS) using a one-step solvent defatting and a pH-shift protein extraction method. The extraction efficiency yields of extracted protein from CSS were significantly lower than all other samples (p < 0.05). The defatted BW had the highest extracted protein content of all samples (p < 0.05). The sizes of the proteins in the starting materials were observed using LDS-PAGE. These sizes were consistent with published values and were mostly unchanged by defatting or the pH-shift process. The presence of 13S globulins and 2S albumins was confirmed under reducing conditions. Protein extracted from all native samples had lower total free essential amino acids than the starting materials. Native CSS and extracted protein followed this trend, but in defatted CSS and respective extracted protein samples, the extracted proteins had higher free essential amino acid content than the starting materials, sometimes of twofold or greater (p < 0.05). After defatting, the percentage of lipids recovered compared to the original lipid content of the samples was measured. The crude fat content of native and hexane-defatted BW flour was higher than BW flour defatted with ethanol (p < 0.05). The lipid extraction efficiency of all samples ranged from 4.6 ± 1.26%–43.20 ± 14.21%. The mass of the native and defatted starting materials were recorded at each step of processing, with reasonable losses assessed. The major non-polar lipid classes in each starting material were separated using thin-layer chromatography. All samples also displayed the presence of polar lipids. When comparing starting materials, BW and BSG was the most effective for protein extraction, and BSG has the most promise for lipid removal and potential for upcycling. All the examined starting materials show promise for use in food supplementation, especially as native flours. These products are plentiful and considered underutilized or side-stream products.

Influence Of Different Rates Of Biochar And Deer Browsing On Pollinator Plant Productivity, Bipana Bhusal

Graduate Theses, Dissertations, and Problem Reports (ETD)

Biochar, a carbon-rich material produced from biomass, has received wide attention for soil amendment to improve plant growth. However, its specific effects on pollinator friendly plants remain poorly understood. In this study, we evaluated the effects of four biochar application rates (0, 10, 20, 40 tons/acre) and deer exclusion (fenced vs. unfenced) on the productivity of three pollinator species; Buckwheat (Fagopyrum esculentum), Plains Coreopsis (Coreopsis tinctoria), and Black-eyed Susan (Rudbeckia hirta) in a utility right of way with a history of mining. A split-plot randomized design was used, and the results were analyzed using …

Microbial And Plant Biodiversity In Appalachian Agroecosystems And Their Implications For Soil Health, Kinsey Reed Close

Graduate Theses, Dissertations, and Problem Reports (ETD)

The sustainability of agricultural landscapes depends on understanding the complex interactions between plants, soil, and microbes. In Appalachia, a region shaped by complex terrain and long histories of human and ecological interaction, small family farms produce hay, livestock, and row crops. These agroecosystems, though often treated as “artificial” by many ecologists, have the potential to support both food production and biodiversity conservation if managed with an understanding of ecological complexity. This dissertation examines how plant and microbial diversity interact with soil and management to influence nutrient cycling, soil health, and long-term resilience in Appalachian agricultural systems. A literature review revealed …

2025 Annual Report, Tennessee. Division Of Forestry And Tennessee. Department Of Agriculture

Forestry Annual Reports

This annual report presents an overview of Tennessee Forestry Commission programs and management.

Quantifying Modifiable Lifestyle Behaviors And Influences Associated With Preventable Cancers In Selected Rural Counties: A Mixed Method Study, Jecinta Scott

Dissertations and Theses

Cancer is the second leading cause of death in the United States disproportionately affecting rural communities. This dissertation study investigates the involvement of rural communities in lifestyle behaviors associated with increased risk of cancers, the impact of socioeconomic factors, and what influences their behavior and the impact of political party affiliation. The study was conducted using a mixed-method quantitative data analysis enhanced by qualitative interviews. It began with an extensive literature review to identify existing research, and evidence gaps on the topic. Data collection involved retrospective quantitative extraction from the Centers for Disease Control and Prevention’s Behavioral Risk Factor Surveillance …