Digital Commons Network^™

Increasing Ph In Cancer: Enabling A New Therapeutic Paradigm Using Novel Carbonate Nanoparticles, Avik Som

McKelvey School of Engineering Graduate Student Theses & Dissertations

Enormous progress has been made to treat cancer, and yet the mortality rate of cancer remains unacceptably high. High clinical resistance to molecularly targeted therapeutics has pushed interest again towards inhibiting universal biochemical hallmarks of cancer. Recent evidence suggests that malignant tumors acidify the local extracellular environment to activate proteases for degrading the tumor matrix, which facilitates metastasis, and explains why more aggressive tumors are more acidic. Current therapies have only focused on using the low pH for enhancing drug release in tumors, thereby still relying on the traditional paradigm of intracellular inhibition of pathways, a method that continues to …

Physical And Social Systems Resilience Assessment And Optimization, Daniel Romero Rodriguez

USF Tampa Graduate Theses and Dissertations

Resilience has been measured using qualitative and quantitative metrics in engineering,economics, psychology, business, ecology, among others. This dissertation proposes a resilience metric that explicitly incorporates the intensity of the disruptive event to provide a more accurate estimation of system resilience. A comparative analysis between the proposed metric and average performance resilience metrics for linear and nonlinear loss and recovery functions suggests that the new metric enables a more objective assessment of resilience for disruptions with different intensities. Moreover, the proposed metric is independent of a control time parameter. This provides a more consistent resilience estimation for a given system and …

Conference Program, Anne Skaja Robinson, Raghavan Venkat, Gene Schaefer

Cell Culture Engineering XVI

No abstract provided.

Developing An Hpv Infection Risk Prediction Model For Adult Females, Rachel Holmer

Industrial Engineering Undergraduate Honors Theses

According to the Centers for Disease Control and Prevention (CDC), nearly one in four people are currently infected with human papillomavirus (HPV) in the United States. Although most people with HPV never experience symptoms, there is a risk of developing different types of HPV-related cancers after infection. These cancers and other related diseases result in almost $8 billion spent annually for treatment. Currently, all boys and girls ages 11 or 12 years are recommended to receive HPV vaccination. Catch-up vaccines are recommended for males and females through the age of 21 and 26, respectively, if they did not get vaccinated …

Thiol–Ene Photopolymerization: A Simple Route To Pro-Antimicrobial Networks Via Degradable Acetals (Pandas), William Martin

Honors Theses

The World Health Organization (WHO) has brought the growing epidemic of antibiotic resistance bacteria to the attention of the public and has expressed the need for the development of new methods of defense. In this direction, bioactive aldehyde essential oils have been shown to effectively act as antibiotic and antifungal agents. These bioactive compounds, when used in their pure form, are volatile and lack environmental stability. In this thesis, we describe the synthesis of pro-antimicrobial networks via degradable acetals (PANDAs) using thiol-ene photopolymerization. PANDAs were used as a new model for the high loading and release of bioactive aldehyde-containing compounds …

Grady Health Systems Linen Optimization, Kyleia Hutton, Samira Abdi

Senior Design Project For Engineers

Grady Memorial Hospital, under Grady Health Systems (GHS), is the fifth largest public hospital systems in the United States of America. In the Southeast region, Grady Memorial Hospital is a premier level I trauma institution, that also provides other medical service specialties that accumulate a diverse, and knowledgeable set of medical professionals. Within this report, there are various recommendations that our team has presented based on different scenarios that could be present within the interaction of the linen management department and other departments at Grady Health Systems. These recommendations will aid in determining the best decision that can be made …

Engineering Synthetic Antibody For Prostate Cancer Detection, Kimberley Gonzalez, Tatum Prosswimmer, Cassandra Stawicki

Bioengineering Senior Theses

This Senior Design project seeks to manufacture an E. Coli based antibody for prostate cancer detection using unnatural amino acid incorporation. Current diagnostic techniques take advantage of the high binding specificity of monoclonal antibodies to detect the concentration of prostate specific antigen (PSA) in a blood sample. Production of this technology is lengthy and costly, while simultaneously incurring countless ethical problems related to animal welfare and accessibility. This project proposes a synthetic antibody that can be produced efficiently in single E. Coli cells and exhibits complementary binding to PSA. By incorporating an unnatural amino acid into a recombinant peptide sequence, …

Optimization Of Microfluidic Chip Fabrication Via Femtosecond Laser Ablation, Kenneth Aycock

Senior Theses

Microfluidic devices have become staple tools in biomedical research and have a promising future as low cost, point-of-care (POC) diagnostic devices. Despite the advancements in microfluidic device technology, the manipulation and fabrication of these systems can be tedious and expensive. Repeatable techniques in which computer-aided designs are translated into microfluidic systems in a matter of minutes are highly desirable both for researchers and manufacturers. Laser ablation of tape substrates has shown promise in producing cost-effective, rapidly manipulable devices, but the work done thus far has utilized continuous wave lasers that perform suboptimally due to the relatively short wavelengths used and …

Multiplexed Optofluidics For Single-Molecule Analysis, Matthew Alan Stott

Theses and Dissertations

The rapid development of optofluidics, the combination of microfluidics and integrated optics, since its formal conception in the early 2000's has aided in the advance of single-molecule analysis. The optofluidic platform discussed in this dissertation is called the liquid core anti-resonant reflecting optical waveguide (LC-ARROW). This platform uses ARROW waveguides to orthogonally intersect a liquid core waveguide with solid core rib waveguides for the excitation of specifically labeled molecules and collection of fluorescence signal. Since conception, the LC-ARROW platform has demonstrated its effectiveness as a lab-on-a-chip fluorescence biosensor. However, until the addition of optical multiplexing excitation waveguides, the platform lacked …

Study Of Abc Membrane Transporters In Single Live Cells, Preeyaporn Songkiatisak

Chemistry & Biochemistry Theses & Dissertations

The multidrug ATP-binding cassette (ABC) membrane transporters (efflux pumps) are found in both prokaryotes and eukaryotes and they can extrude diverse structurally unrelated substrates, such as antibiotics and chemotherapeutic agents out of the cells. The efflux pumps are responsible for multidrug resistance (MDR) and the failure of numerous treatments in infections and cancers. All ABC membrane transporters share a common modular topology containing two transmembrane domains (TMDs) and two nucleotide binding domains (NBDs). The underlying molecular mechanisms regarding how the similar structural ABC membrane transporters could selectively extrude a wide variety of substrates and cause MDR, are not yet fully …

A System Dynamics Innovation Diffusion Model Applied To Carbon Nanotube Manufacturing, Frances G. Mackinnon

Theses and Dissertations

The transition of advanced technologies from their nascent state to viable commercial entities is a critical step in assuring the United States' national technological superiority and support is often required to incubate such technological developments. We propose a spiral development to investigate the possible scenarios, underlying economics, and risk associated with scaling up carbon nanotube (CNT) production to a commercially viable scale. As the first stage of this proposed effort, this study characterizes the potential scenarios by which a CNT manufacturing company can generate positive annual net revenue and potentially be considered a competitive manufacturer of CNT products on an …

Poster Session 1, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

1. The Ecological Importance of Perched Aquifers and Their Hydrological Connectivity to Ridge Top Ephemeral Wetlands in Daniel Boone National Forest
2. Water Bugs and Bacteria: Creating a Water Quality Monitoring Program for the Wheeling Creek Watershed in the Northern Panhandle of West Virginia
3. Use of eDNA to Detect Salamander Species in Central Kentucky Streams
4. Hydrogeological Properties of Natural and Constructed Wetlands in Kentucky’s Daniel Boone National Forest
5. Use of eDNA in Multiple Species Fish Biomass Determinations in Small to Mid-sized Lotic Systems
6. Rainfall Runoff Model Development Using HSPF for a Flood Control Reservoir System to Examine Long Term Benefits
7. Examining the …

The Effect Of Poly (Glycerol Sebacate) Incorporation Within Hybrid Chitin–Lignin Sol–Gel Nanofibrous Scaffolds, Tuerdimaimaiti Abudula, Lassaad Gzara, Giovanna Simonetti, Ahmed Alshahrie, Numan Salah, Pierfrancesco Morganti, Angelo Chianese, Afsoon Fallahi, Ali Tamayol, Sidi A. Bencherif, Adnan Memic

Department of Mechanical and Materials Engineering: Faculty Publications

Chitin and lignin primarily accumulate as bio-waste resulting from byproducts of crustacean crusts and plant biomass. Recently, their use has been proposed for diverse and unique bioengineering applications, amongst others. However, their weak mechanical properties need to be improved in order to facilitate their industrial utilization. In this paper, we fabricated hybrid fibers composed of a chitin–lignin (CL)-based sol–gel mixture and elastomeric poly (glycerol sebacate) (PGS) using a standard electrospinning approach. Obtained results showed that PGS could be coherently blended with the sol–gel mixture to form a nanofibrous scaffold exhibiting remarkable mechanical performance and improved antibacterial and antifungal activity. The …

Effectiveness Of Biocide Substitution And Management Plan Implementation For The Control Of, Adelmarie Bones

USF Tampa Graduate Theses and Dissertations

After the notorious outbreak and discovery of Legionella bacteria in 1976, the waterborne pathogen was added to the list of disease-causing agents associated with the built environment. Legionella pneumophila was discovered when it was identified as the agent that caused 34 deaths and an outbreak of pneumonia-like symptoms in several attendees of the 1976 American Legion Convention held in Philadelphia (OSHA, 2017).

Recently published data from the year 2015 reported more than 6,000 Legionnaires’ cases identified in the United States (CDC, 2016). This is a concerning number given that one in every ten infected persons will die of the disease. …

Production Of Genetically Engineered Golden Syrian Hamsters By Pronuclear Injection Of The Crispr/Cas9 Complex, Rong Li, Jinxin Miao, Seokhwan Song, Il-Keun Kong, Yaohe Wang, Zhongde Wang

Animal, Dairy, and Veterinary Science Faculty Publications

The pronuclear (PN) injection technique was first established in mice to introduce foreign genetic materials into the pronuclei of one-cell stage embryos. The introduced genetic material may integrate into the embryonic genome and generate transgenic animals with foreign genetic information following transfer of the injected embryos to foster mothers. Following the success in mice, PN injection has been applied successfully in many other animal species. Recently, PN injection has been successfully employed to introduce reagents with gene-modifying activities, such as the CRISPR/Cas9 system, to achieve site-specific genetic modifications in several laboratory and farm animal species. In addition to mastering the …

Engineered Nanomaterials And Human Health: Part 2. Applications And Nanotoxicology (Iupac Technical Report) (Review), Vladimir Gubala, Linda J. Johnston, Harald Friedrich Krug, Colin J. Moore, Christopher K. Ober, Michael Schwenk, Michel R. Vert

Reports

Research on engineered nanomaterials (ENM) has progressed rapidly from the very early stages of studying their unique, size-dependent physicochemical properties and commercial exploration to the development of products that influence our everyday lives. We have previously reviewed various methods for synthesis, surface functionalization, and analytical characterization of ENM in a publication titled 'Engineered Nanomaterials: Preparation, Functionalization and Characterization'. In this second, inter-linked document, we first provide an overview of important applications of ENM in products relevant to human healthcare and consumer goods, such as food, textiles, and cosmetics. We then highlight the challenges for the design and development of new …

Investigation On The Regeneration And Corrosion Characteristics Of An Anodized Aluminum Plate Regenerator., Tao Wen, Lin Lu, Hongxing Yang, Yimo Luo

Faculty of Science & Technology (THEi)

The traditional vapor compression cooling system (VCS) has been criticized for its heavy reliance on electricity consumption and limited control ability of humidity. Compared with the VCS, the liquid desiccant cooling system (LDCS) is more efficient by handling the sensible and latent load separately. The present study investigated the regeneration and corrosion characteristics of an anodized aluminum plate regenerator for the first time. Comparative tests were conducted to present the regeneration and corrosion characteristics of the normal and anodized regenerator. The influence of internal heating on the regeneration performance was also identified. The results showed that the corrosion rate was …

Disinfection By-Product Reduction Study Of A Small Central Florida Public Water System, Paul Staubus

Electronic Theses and Dissertations

The disinfection of water for potabilization has proven to be one of the most significant public achievements of the 20th century. Although chemical disinfectants are successfully utilized to inactivate acute pathogenic organisms, they may react with natural organic matter (NOM) to produce potentially-harmful disinfection by-products (DBPs). As a result, the United States Environmental Protection Agency regulates DBPs such as total trihalomethanes (TTHMs) and haloacetic acids (HAAs). The research herein is focused on the formation, removal, and control of TTHMs and HAAs in a small public water system (PWS) in Polk County, Florida (County). Pilot-scale tests were implemented to determine the …

Tumor Cell Death After Electrotransfer Of Plasmid Dna Is Associated With Cytosolic Dna Sensor Upregulation, Katarina Znidar, Masa Bosnjak, Nina Semenova, Olga N. Pakhomova, Loree Heller, Maja Cemazar

Bioelectrics Publications

Cytosolic DNA sensors are a subgroup of pattern recognition receptors (PRRs) and are activated by the abnormal presence of the DNA in the cytosol. Their activation leads to the upregulation of pro-inflammatory cytokines and chemokines and can also induce cell death. The presence of cytosolic DNA sensors and inflammatory cytokines in TS/A murine mammary adenocarcinoma and WEHI 164 fibrosarcoma cells was demonstrated using real time reverse transcription polymerase chain reaction (RT-PCR), western blotting and enzyme-linked immunosorbent assay (ELISA). After electrotransfer of plasmid DNA (pDNA) using two pulse protocols, the upregulation of DNA-depended activator of interferon regulatory factor or Z-DNA binding …

Technology Development For Detection Of Circulating Disease Biomarkers From Liquid Biopsies Using Multifunctional Nanomaterials, Mustafa Balcioglu

Legacy Theses & Dissertations (2009 - 2024)

Despite the advance health care, devastating health conditions such as cancer and infectious diseases that affect populations worldwide are too often not diagnosed until morbid symptoms become apparent in the late phase. Obtaining an early and accurate diagnosis that reveal a hidden lethal threat before the disease becomes complicated may dramatically reduce the severity of its impact on the patient’s life and increase the probability of survival. For example, in the case of ovarian cancer, which is the fifth most common malignancy and the fifth leading cause of cancer mortality in women in the US, the 5-year relative survival is …

Ontology-Guided Pre-Release Inference Disruption, Mark Stephen Daniels

Theses and Dissertations

We investigate privacy violations occurring when non-confidential patient data is combined with medical domain ontologies to disclose a patient’s protected health information (PHI). We propose a framework that detects privacy violations and eliminates undesired inferences. Our inference channel removal process is based on controlling the release of the data items that lead to undesired inferences. These data items are either blocked from release or generalized to eliminate the disclosure of the PHI. We show that our method is sound and complete. Soundness means the only inference paths generated logically follow from released data and corresponding domain knowledge. Completeness means we …

Identification Of Streptococcus Pyogenes Using Raman Spectroscopy, Ehsan Majidi

Wayne State University Dissertations

Despite the attention that Raman Spectroscopy has gained recently in the area of pathogen identification, the spectra analyses techniques are not well developed. In most scenarios, they rely on expert intervention to detect and assign the peaks of the spectra to specific molecular vibration. Although some investigators have used machine-learning techniques to classify pathogens, these studies are usually limited to a specific application, and the generalization of these techniques is not clear. Also, a wide range of algorithms have been developed for classification problems, however, there is less insight to applying such methods on Raman spectra. Furthermore, analyzing the Raman …

A Twitter-Based Study For Understanding Public Reaction On Zika Virus, Roopteja Muppalla

Browse all Theses and Dissertations

In recent times, social media platforms like Twitter have become more popular and people have become more interactive and responsive than before. People often react to every news in real-time and within no-time, the information spreads rapidly. Even with viral diseases like Zika, people tend to share their opinions and concerns on social media. This can be leveraged by the health officials to track the disease in real-time thereby reducing the time lag due to traditional surveys. A faster and accurate detection of the disease can allow health officials to understand people's opinion of the disease and take necessary precautions …

Assessing Exposure To Occupants In An Indoor Space Due To Expirated Aerosols: Application Of Computational Fluid Dynamics, Firoza Binte Omar

Theses and Dissertations

Indoor environment is an important issue for the well-being of the society. In the United States more than 90% people spend their time indoor, indoor air pollution is more culpable than the pollution outside air. Two third of US businesses lose more than $100,000 per year due to workplace related illness. The trend of sharing the work space has an impact on total sick leaves in a company. Infectious particles released by a flu sufferer’s sneezing, coughing or even laughing can be a vital source. A thorough analysis on infectious particles’ transmission and air flow of the space can provide …

Integration Of Biology, Ecology And Engineering For Sustainable Algal‑Based Biofuel And Bioproduct Biorefinery, James Allen, Serpil Unlu, Yaşar Demirel, Paul N. Black, Wayne R. Riekhof

Department of Chemical and Biomolecular Engineering: Faculty Publications

Despite years of concerted research efforts, an industrial-scale technology has yet to emerge for production and conversion of algal biomass into biofuels and bioproducts. The objective of this review is to explore the ways of possible integration of biology, ecology and engineering for sustainable large algal cultivation and biofuel production systems. Beside the costs of nutrients, such as nitrogen and phosphorous, and fresh water, upstream technologies which are not ready for commercialization both impede economic feasibility and conflict with the ecological benefits in the sector. Focusing mainly on the engineering side of chemical conversion of algae to biodiesel has also …

Impact Of Vegetative Treatment Systems On Multiple Measures Of Antibiotic Resistance In Agricultural Wastewater, Lisa M. Durso, Daniel N. Miller, Christopher G. Henry

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Wastewater is an important vector of antibiotic resistant bacteria and antibiotic resistance genes (ARB/G). While there is broad agreement that ARB/G from agricultural (ag) wastewaters can be transported through the environment and may contribute to untreatable infectious disease in humans and animals, there remain large knowledge gaps surrounding applied details on the types and amounts of ARB/G associated with different agricultural wastewater treatment options and different ag production systems. This study evaluates a vegetative treatment system (VTS) built to treat the wastewater from a beef cattle feedlot. Samples were collected for three years, and plated on multiple media types to …

Particle Filters For State Estimation Of Confined Aquifers, Graeme Field

UNF Graduate Theses and Dissertations

Mathematical models are used in engineering and the sciences to estimate properties of systems of interest, increasing our understanding of the surrounding world and driving technological innovation. Unfortunately, as the systems of interest grow in complexity, so to do the models necessary to accurately describe them. Analytic solutions for problems with such models are provably intractable, motivating the use of approximate yet still accurate estimation techniques. Particle filtering methods have emerged as a popular tool in the presence of such models, spreading from its origins in signal processing to a diverse set of fields throughout engineering and the sciences including …

Endothelialization Of Microchannels In A Three Dimensional Breast Cancer Tumor Surrogate Model, Derek Van Vessem

All ETDs from UAB

Drug discovery and testing commonly employs two dimensional (2D) human cell line monolayers for lead compound identification before becoming a candidate therapy to be studied in animal models. Culturing cells in 2D produces a homogenous disbursement of nutrients and anticancer-therapeutics resulting in a response specific to 2D that does not necessarily translate to a three dimensional (3D) response. This method unfortunately distorts the in vivo human drug response. The lack of physiologic dimensionality in 2D cell monolayers distort cellular responses relative to 3D systems that can be attributed to minimal drug approvals. Oncology drugs are the least successful with only …

The Development Of Microfluidic Devices For The Production Of Safe And Effective Non-Viral Gene Delivery Vectors, Jason Matthew Absher

Theses and Dissertations--Chemical and Materials Engineering

Including inherited genetic diseases, like lipoprotein lipase deficiency, and acquired diseases, such as cancer and HIV, gene therapy has the potential to treat or cure afflicted people by driving an affected cell to produce a therapeutic protein. Using primarily viral vectors, gene therapies are involved in a number of ongoing clinical trials and have already been approved by multiple international regulatory drug administrations for several diseases. However, viral vectors suffer from serious disadvantages including poor transduction of many cell types, immunogenicity, direct tissue toxicity and lack of targetability. Non-viral polymeric gene delivery vectors (polyplexes) provide an alternative solution but are …

Development Of A Scn1a Null Zebrafish Model For Screening Potential Anti-Epileptic Natural Products, Patricia Ann Lipson

Honors Theses

Epilepsy affects around 50 million people in the world. Thus, it is imperative that new more effective and safe treatments be found. This study was designed to use zebrafish to screen potential anti-epileptic natural products. We utilized two scn1Lab null zebrafish models (morpholino-injected fish where scn1Lab was transiently knocked down and a transgenic scn1Lab -/- fish line). Alternatively, we used AB wildtype fish to test compounds in a chemically-induced seizure model. Natural compounds including cannabidiol, CBD, and Tapinanthus globiferous, TG, extracts were screened for their anti-seizure activity. When scn1Lab -/- fish were treated with CBD (0.075 and 0.3 mg/L) from …