Digital Commons Network^™

Characterization Of Physical And Biochemical Traits In Wheat And Corn Plants Using High Throughput Image Analysis, Kantilata Thapa

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Plant phenotyping has been recognized as a rapidly growing field of research due to the labor-intensive, destructive, and time-consuming nature of traditional phenotyping methods. These phenotyping bottlenecks can be addressed by advancements in image-based phenotyping like RGB and hyperspectral imaging for the assessment of plant traits important for breeding purposes. This study aims (1) to characterize the physical and biochemical traits of wheat and corn plants using RGB and hyperspectral imaging in the greenhouse, and (2) to estimate leaf nitrogen (N), phosphorus (P), and potassium (K) content using hyperspectral imaging and an analytical spectral device (ASD spectrometer) and compare the …

Assessing High Dynamic Range Imagery Performance For Object Detection In Maritime Environments, Erasmo Landaeta

Doctoral Dissertations and Master's Theses

The field of autonomous robotics has benefited from the implementation of convolutional neural networks in vision-based situational awareness. These strategies help identify surface obstacles and nearby vessels. This study proposes the introduction of high dynamic range cameras on autonomous surface vessels because these cameras capture images at different levels of exposure revealing more detail than fixed exposure cameras. To see if this introduction will be beneficial for autonomous vessels this research will create a dataset of labeled high dynamic range images and single exposure images, then train object detection networks with these datasets to compare the performance of these networks. …

Nautilus Rov Robot Manipulator, Dana Stefanides, Jenny Huynh, Andrew Stewart, Steven Reimer, Andrew Nguyen, Rebecca Walters, Matt Hayes

Interdisciplinary Design Senior Theses

Global warming and climate change are prevalent issues in today’s society. As a result, research in the ocean, our world’s biggest ecosystem, is imperative in efforts to protect the environment. Santa Clara University’s Robotic Systems Lab contributes to this field through work and developments on remotely operated vehicles (ROVs). An existing ROV system called Nautilus consists of a robot arm, end effector, and storage system in order to collect various types of sediments at a depth of 300 feet. However, the previous system does not meet that requirement. In direct collaboration with researchers within the Monterey Bay Aquarium Research Institute, …

Simulating Steam Jets Due To Rapid Plate Tectonics: A Computational Fluid Dynamics Analysis, Emilie Hatton

Senior Honors Theses

According to the Bible's account of earth's physical history, the majority of geological change from creation to the Ice Age is a consequence of the global Flood cataclysm described in Genesis 6-8. The changes included large-scale tectonic activity, recycling all pre-Flood ocean floor into the mantle, and generating all present-day igneous ocean floor by seafloor spreading at mid-ocean rift zones. Along the middle of these zones, strips of newly formed seafloor were present near the melting temperature of basaltic magma. Above these strips of extremely hot rock, intense jets of steam would almost certainly form. This research seeks to investigate …

Agen/Bsen 112 Final Project: Moving And Temperament Of Cattle, Elly Vo, Taetum Baxa, Ved Patel, Brady Giles, Tami M. Brown-Brandl, Rossana Villa-Rojas

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Cattle movement and weather may affect the body temperature of cows which in turn affects their natural behavior and can influence their metabolism. Cattle take several days to resume their normal eating patterns after being overheated, and that can affect dairy production. This project was assigned to study the effect of temperament (calm vs excitable) and evaporative cooling on the body temperature of moving animals to optimize the environmental conditions around the cattle and consequently, dairy production.

The project began with processing of a data set from Tami Brown-Brandl who was the client/adviser for the group. The data contained the …

Drinking Water Contaminants: Bacteria, Bruce I. Dvorak, Becky O. Schuerman

Department of Civil and Environmental Engineering: Faculty Publications

Testing drinking water for fecal bacteria or Escherichia coli (E. coli) is commonly used as an indicator of the presence of pathogenic microorganisms. The presence of pathogenic (disease-causing) microorganisms is a concern when considering the safety of drinking water. Pathogenic microorganisms can cause flu-like systems, intestinal infections, dysentery, hepatitis, typhoid fever, cholera, and other illnesses.

Evaluating The Impact Of Land Use Changes, Drivers Of Tmdl Development, And Green Infrastructure On Stream Impairments, Charitha Jayasri Gunawardana

Dissertations (1934 -)

Despite the water quality improvements and regulatory advancements over the last 50 years since the enactment of the Clean Water Act, water bodies within the United States are still impaired for a broad range of contaminants from non-point source pollution. Improving watershed management approaches to meet this challenge will require a greater understanding of (1) how changes within a watershed, such as changing land use, impact stream water quality, (2) what influence socioeconomic, spatial and political factors may have on the progress towards meeting water quality goals, such as those set within Total Maximum Daily Loads (TMDLs), and (3) how …

The Potential For Mycofiltration Of E. Coli Pollution In The Crum Creek Using T. Versicolor And P. Ostreatus, Kennedy M. Hill , '23

Senior Theses, Projects, and Awards

Mycoremediation is a cost-effective and environmentally friendly alternative to conventional wastewater and drinking water treatment, as well as other environmental remediation methods. This project will design a mycofiltration system using mushroom species T. versicolor and P. ostreatus. Water from a section of the Crum Creek, located in Swarthmore, Pennsylvania, U.S.A, will be sampled and filtered through this system to remove Escherichia coli (E. coli). The mycofiltered water will be compared to the Environmental Protection Agency standards for E. coli concentrations in recreational and drinking water to measure how effective T. versicolor or P. ostreatus may be at removing …

Swimming Robots Using Memory Metal, Joshua R. Heckman , '23

Senior Theses, Projects, and Awards

While in the very early stages of life, Barnacle nauplii are only a few micrometers in length, which causes them to experience a very low Reynolds number while swimming through water. It is important to understand how these biological creatures swim, so their movements can be mimicked and incorporated into robotics. Currently, there are no autonomous underwater vehicles (AUV) that are capable of carrying out missions in fluids with low Reynolds numbers. This project aimed to replicate the movement of a Barnacle Napuli with the use of muscle memory wire, in hopes that one day a AUV that can operate …

Implementation Of The Downlink Communication System Of The Lmu Cubesat, Mohammed Alrabeeah

LMU Theses and Dissertations

In this thesis, we present the design and implementation of a CubeSat receiver system using the Universal Software Radio Peripheral (USRP) and GNU Radio. The goal of this project is to develop a low-cost and flexible ground station capable of receiving telemetry and payload data from CubeSats in real time. The CubeSat receiver operates in the UHF frequency range with a center frequency of 435 MHz and uses a software-defined radio (SDR) approach to provide wideband signal processing and demodulation capabilities. The satellite transceiver transmits an Ax.25 Transciever packet every 1 second using the Pumpkin CubeSat kit programmed in MPLab. …

Reference-Based Screentone Transfer Via Pattern Correspondence And Regularization, Zhansheng Li, Nanxuan Zhao, Zongwei Wu, Yihua Dai, Junle Wang, Yanqing Jing, Shengfeng He

Research Collection School Of Computing and Information Systems

Adding screentone to initial line drawings is a crucial step for manga generation, but is a tedious and human-laborious task. In this work, we propose a novel data-driven method aiming to transfer the screentone pattern from a reference manga image. This not only ensures the quality, but also adds controllability to the generated manga results. The reference-based screentone translation task imposes several unique challenges. Since manga image often contains multiple screentone patterns interweaved with line drawing, as an abstract art, this makes it even more difficult to extract disentangled style code from the reference. Also, finding correspondence for mapping between …

Approximate Computing Based Processing Of Mea Signals On Fpga, Mohammad Emad Hassan

Dissertations

The Microelectrode Array (MEA) is a collection of parallel electrodes that may measure the extracellular potential of nearby neurons. It is a crucial tool in neuroscience for researching the structure, operation, and behavior of neural networks. Using sophisticated signal processing techniques and architectural templates, the task of processing and evaluating the data streams obtained from MEAs is a computationally demanding one that needs time and parallel processing.
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/="/">This thesis proposes enhancing the capability of MEA signal processing systems by using approximate computing-based algorithms. These algorithms can be implemented in systems that process parallel MEA channels using the Field …

Towards An Evolved Immersive Experience: Exploring 5g-And Beyond-Enabled Ultra-Low-Latency Communications For Augmented And Virtual Reality, Ananya Hazarika, Mehdi Rahmati

Electrical and Computer Engineering Faculty Publications

Augmented reality and virtual reality technologies are witnessing an evolutionary change in the 5G and Beyond (5GB) network due to their promising ability to enable an immersive and interactive environment by coupling the virtual world with the real one. However, the requirement of low-latency connectivity, which is defined as the end-to-end delay between the action and the reaction, is very crucial to leverage these technologies for a high-quality immersive experience. This paper provides a comprehensive survey and detailed insight into various advantageous approaches from the hardware and software perspectives, as well as the integration of 5G technology, towards 5GB, in …

Entre Punzones Y Percutores Reconstrucción De Tecnología Ósea De Los Selk'nam (Tierra Del Fuego), Rachel Dietz

Independent Study Project (ISP) Collection

Esta investigación se enfoca en el estudio, reconstrucción y uso de la tecnología ósea empleada por las sociedades cazadoras-recolectoras-pedestres que ocuparon el litoral Atlántico de Tierra del Fuego, durante el Holoceno, específicamente se enfoca en la tecnología utilizada por los Selk´nam del Norte de Tierra del Fuego. La tecnología ósea fue una parte importante de su cultura y dos tipos fueron elegidos para investigar: percutores blandos y punzones huecos. Los percutores blandos fueron confeccionados sobre huesos de guanaco, un recurso importante para las sociedades cazadoras-recolectoras.

Los percutores blandos fueron usados para la formatización de artefactos líticos a través de la …

Gluten Free Diet Ameliorates Si Enteropathy In Iga Deficient Mice, Ryan Albert William Ball

Theses and Dissertations

Secretory IgA is the most abundant antibody in the intestinal mucosal and functions as the first line of defense against pathogens and micro-organisms in the gut. Selective IgA deficiency is the most common form of antibody deficiency. Clinically, IgA deficient patients are largely asymptomatic, they are however at a higher risk of developing certain inflammatory conditions like Celiac disease; an SI-specific enteropathy triggered by exposure to dietary gluten. Interestingly, celiac patients are 10-15 times more likely to have an IgA deficiency. Recent studies have shown that IgA^-/- mice develop enteropathy specifically in the ileum. We confirmed this phenotype in …

A Device For Measuring Acoustic Output Intensity Of Transcranial Doppler Ultrasound Transducers For Comparison With Fda Regulations, Sarah Altman, Gregory Bashford, Benjamin Hage

Honors Program: Senior Projects (Public)

Transcranial Doppler Ultrasonography (TCD) is a non-invasive methodology which can evaluate cerebral blood flow velocity in real time. Single-element focused circular transducers placed on the scalp produce ultrasound waves capable of penetrating the skull with minimal aberration, enabling measurement of the Doppler shift. As such, TCD can measure blood flow velocity in the internal carotid and vertebral arteries, as well as the arteries of the Circle of Willis: the Anterior Cerebral (ACA), Posterior Cerebral (PCA), and Middle Cerebral Arteries (MCA). Intracranial aneurysm and ischemic stroke are serious conditions in which ballooning or occlusion of cerebral vessels cause insufficient perfusion, leading …

Neurodevelopmental And Transient Impacts Of Brain Kynurenic Acid Elevation And Sleep-Wake Behavior, Katherine Rentschler

Theses and Dissertations

Sleep is vital for healthy cognition and mood. Sleep dysregulation is implicated in psychiatric disorders such as schizophrenia and bipolar disorder. Sex differences in sleep and arousal dysregulation are prominent in patients with psychotic disorders. Elevated levels of the neuroactive tryptophan metabolite, kynurenic acid (KYNA), have been found in cerebrospinal fluid and postmortem brain tissue samples from patients with psychotic disorders. KYNA is an astrocyte derived antagonist at N-methyl-D-aspartate (NMDA) glutamate receptors and α7 nicotinic acetylcholine (α7nACh) receptors. KYNA is synthesized in the brain from its biological precursor, kynurenine, via the enzyme kynurenine aminotransferase II (KAT II), a potential therapeutic …

Mclaughlin-Walsh Residence Hall Expansion, Rebecca Huang, Shanelle Smith

Civil, Environmental and Sustainable Engineering Senior Theses

An expansion of McLaughlin-Walsh Residence at Santa Clara University was designed to provide additional housing accommodations to on-campus residents. The design included both the structural and geotechnical components. The proposed solution included a vertical expansion of the residence hall with the design of a podium to span over the existing structure to support an additional residential structure. The loads of the additional residential structure were estimated to complete the design of the podium structure. The podium was designed to support the estimated loads using reinforced concrete columns, steel beams, prefabricated trusses, and concrete on metal deck. The podium design was …

Transcriptome Profiling Of A Synergistic Volumetric Muscle Loss Repair Strategy, Kevin Roberts, John Taehwan Kim, Jacob Schluns, Grady Dunlap, Jamie Hestekin, Jeffery Wolchok

Biomedical Engineering Faculty Publications and Presentations

Volumetric muscle loss overwhelms skeletal muscle’s ordinarily capable regenerative machinery, resulting in severe functional deficits that have defied clinical repair strategies. In this manuscript we pair the early in vivo functional response induced by differing volumetric muscle loss tissue engineering repair strategies that are broadly representative of those explored by the field (scaffold alone, cells alone, or scaffold + cells) to the transcriptomic response induced by each intervention. We demonstrate that an implant strategy comprising allogeneic decellularized skeletal muscle scaffolds seeded with autologous minced muscle cellular paste (scaffold + cells) mediates a pattern of increased expression for several genes known …

Effect Of Storage Condition On Penetration Threshold Of Porcine Skin Tissue, Jared Michael Koser

Master's Theses (2009 -)

Buried blast explosions create small projectiles which can become lodged in the tissue of personnel as far away as hundreds of meters. Without appropriate treatment, these lodged projectiles can become a source of infection and prolonged injury to soldiers in modern combat. Human cadavers can be used as surrogates for living humans for ballistic penetration testing, but human cadavers are frozen during transport and storage. The process of freezing and thawing the tissue before testing may change the biomechanical properties of the tissue. The goal of the current study was to investigate the effect of tissue storage on penetration threshold …

Effects Of Various Dietary Carbohydrate Sources On The Growth Performance And Body Composition Of The Dog Conch, Laevistrombus Canarium, Jen-Hong Chu

Journal of Marine Science and Technology–Taiwan

This study investigates the effects of dietary supplementation with various carbohydrate sources on the growth and dietary nutrient utilization efficiency of a 0.72-g dog conch, Laevistrombus canarium. Five treatment diets had supplementation with alpha-starch (Sta), dextrin (Dex), pullulan gum (Pg), xanthan gum (Xg), and carboxymethyl cellulose (CMC). At the end of the feeding trial, the best growth performance (weight gain, 442.23%) and diet efficiency (protein efficiency ratio, 1.25, and feed conversion ratio [FCR], 2.04) were exhibited by the dog conch fed the Sta diet, whereas the lowest growth performance was observed in the dog conch fed the Xg and CMC …

Pamam- Cyclodextrin Conjugate Upregulates Brain-Derived Neurotropic Factor In Arpe-19 Cells, Gopika Ashokan

USF Tampa Graduate Theses and Dissertations

Background: Traumatic Brain Injury (TBI) is a major contributor to death and disability due to motorvehicle accidents, sports, physical abuse, and battlefield injuries. The primary insult to the brain leads to inflammation, vascular dysfunction, and oxidative stress in the brain as well as in the eye. This leads to loss of Retinal Ganglion Cells (RGCs) and downregulation of Brain derived Neurotopic Factor (BDNF). BDNF is a neurotrophic factor that binds to Tropomyosin Receptor Kinase B (TrkB) receptor to promote cell growth, survival, and differentiation. Current treatment strategies do not promote neuronal regeneration. Therefore, novel treatments are needed to restore vision …

Cable Decoupling And Cable-Based Stiffening Of Continuum Robots, Parsa Molaei

LSU Master's Theses

Cable-driven continuum robots, which are robots with a continuously flexible backbone and no identifiable joints that are actuated by cables, have shown great potential for many applications in unstructured, uncertain environments. However, the standard design for a cable-driven continuum robot segment, which bends a continuous backbone along a circular arc, has many compliant modes of deformation which are uncontrolled, and which may result in buckling or other undesirable behaviors if not ameliorated. In this study, a detailed approach for using additional cables to selectively stiffen planar cable-driven robots without substantial coupling to the actuating cables is investigated. A mechanics-based model …

Determinants And Outcomes Of Urban Land Use Succession - Case Study Of Upper Hill, Nairobi, Elizabeth M.K. Nguah, Owiti A. K'Akumu, Mary Kimani

Architecture and Planning Journal (APJ)

This paper is based on a PHD research carried out to explore Urban Land Use Succession (ULUS) that is driven by private actors financed by local or global capital, referred to as property-led urban redevelopment. ULUS is manifested in indicators like land values, height of buildings, and migration. Its motive is profit taking contrasting it from ULUS that is driven by public and public-private partnerships (PPPs). ULUS has helped reimage cities, but in some cases, it has resulted in negative consequences such as pressure on existing infrastructure and patchwork land use patterns. A case study of Upper Hill is used …

An Evaluation Of Augmented Reality-Based User Interfaces In The Design Process, Feyza Nur Koçer Özgün, Sema Alaçam

Architecture and Planning Journal (APJ)

The aim of this study is to evaluate the user interfaces that reflect different interaction layers in the context of Augmented Reality technology. Depending on the physical characteristics of human interaction with the computer, these layers were examined under four sections: Graphical User Interface (GUI), Tangible User Interface (TUI), Natural User Interface (NUI) and Spatial User Interface (SUI). In this context, a proposed Augmented Reality application interface has been developed to bridge the physical and digital environment. The use of AR-based applications in the design process provided a basis for evaluating the user interface in these interaction layers. In future …

How Metaverse Evolves The Architectural Design, Sheida Shakeri, Muhammed Ali Ornek

Architecture and Planning Journal (APJ)

Architects have long relied on visualization tools to develop their concepts for specific design problems. From the early traditional drawings to the three-dimensional visualizations and virtual environments, all have enabled architects to demonstrate design outputs relatively early in the process. Real-world projects are similar to what architects imagined from the beginning. In other words, the design process has always started by creating the digital representation of a project and then attempting to replicate it in real life. Once the digital representation of design parts is complete, architects prepare their design for construction. However, the final visualization emerges from actual architectural …

Adapting Digital Architecture Vocabulary To Reformulate Geometric Compositions Of Islamic Facades - Case Study: Proposed Model For Islamic Façade Through Digital Vocabulary, Sarah I. Hassan

Architecture and Planning Journal (APJ)

Islamic architectural facades characterized by many distinguished vocabularies that formed its character; as arches, ornaments, al-Muqarnas and mashrabeya etc. However, during the modern era, the Islamic heritage regions faced many changes and transformations of its character, either by new buildings that were built according to modern or unplanned styles, or by random and unplanned developments. However, recently and with the beginning of the twenty first century and with the great breakthrough in the digital tools and techniques, it facilitates new horizons in the architectural form generation. Accordingly, the research focuses on how to investigate the positive impacts of digital technologies …

Conceptual Process Model For Metaverse Architecture - Ssadt’S Design Process, Meriam Djerad, Sonda Kammoun

Architecture and Planning Journal (APJ)

At the articulation of the two themes: “Virtual Environments and Emerging Realities” and “Parametric Design and Digital Fabrication,” our proposal subscribes at the intersection of innovative technologies in architectural practice, such as blockchain, collaborative platforms and digital twins. Our purpose is to propose a conceptual design process model for architectural digital twin as a compound of metaverse architecture. The challenge is to achieve a Shared and Secure Architectural Digital Twin (SSADT). To model our SSADT’s design process model we are based on blockchain approach. To do this, we will firstly start by defining the principal compounds of an architectural digital …

Metascapes | Architectural Quests In The Metaverse, Michail Georgiou, Odysseas Georgiou, Ioulios Georgiou

Architecture and Planning Journal (APJ)

The paper investigates the appropriateness of CAAD software and computational design tools for the creation of metaverse content along with the workflows and limitations involved. In parallel the research aims to assess the validity of architecture design studio research in the context of the metaverse, and its capability to produce results that justify further explorations in such direction.

Exploring Virtual Reality As An Approach To Resurrect Destroyed Historical Buildings - An Approach To Revive The Destroyed “Egg Building” Through Vr, Aya Chehab, Bilal Nakhal

Architecture and Planning Journal (APJ)

An important part of a city, that gives it a sense of community and character, is its history. One way of acknowledging this heritage is by preserving historic building and structures. Old buildings are witnesses to the aesthetic and cultural history of a city, helping to give people a sense of place and connection to the past. Unfortunately, despite their importance within the city, historical buildings are most of the time subject to demolition and to be replaced- leaving behind stories told and untold of what use to be. The paper, therefore, aims to explore the capability of the metaverse, …