Digital Commons Network^™

Next-Generation Crop Monitoring Technologies: Case Studies About Edge Image Processing For Crop Monitoring And Soil Water Property Modeling Via Above-Ground Sensors, Nipuna Chamara

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Artificial Intelligence (AI) has advanced rapidly in the past two decades. Internet of Things (IoT) technology has advanced rapidly during the last decade. Merging these two technologies has immense potential in several industries, including agriculture.

We have identified several research gaps in utilizing IoT technology in agriculture. One problem was the digital divide between rural, unconnected, or limited connected areas and urban areas for utilizing images for decision-making, which has advanced with the growth of AI. Another area for improvement was the farmers' demotivation to use in-situ soil moisture sensors for irrigation decision-making due to inherited installation difficulties. As Nebraska …

Mechanical Engineering Capstone: A Reflection On The Design And Prototyping Of A Portable Water Heating System, Timothy Goldsmith

Honors Program: Senior Projects (Public)

This thesis includes several documents from a Mechanical Engineering Capstone course. These include project postmortem reports written at the conclusion of each term. These reports summarize the designing and prototyping of a portable water heating system. Additionally, this thesis includes written feedback on the final presentations for six other senior design teams. In these documents, presentations and projects are evaluated and encouragement and feedback are provided for the teams. The final component of this thesis is an essay reflecting on the different leadership roles assumed during the capstone course.

Determining The Impacts Of Corn Silage Mixing Ratios On Hydrogen Production From Beef Cattle Manure, Katya Faber-Quimby

Honors Program: Senior Projects (Public)

With global warming becoming an increasingly serious threat and a growing population requiring additional energy resources, interest in the production of clean energy from the agricultural sector has surged in popularity. Biohydrogen, also known as green hydrogen, is H₂ that has been produced using renewable energy, such as from agricultural byproducts or waste materials. It presents a promising alternative to nonrenewable resources due to its high potential for energy storage and lack of carbon emissions when used. Cattle manure has been explored as a resource for the production of biohydrogen. Selecting for hydrogen-producing microbes in the manure serves the …

Investigation Of Early Stage Wound Healing In Volumetric Muscle Loss, Sean Ong

Biomedical Engineering Undergraduate Honors Theses

Volumetric muscle loss (VML) refers to the substantial removal of tissue from skeletal muscle due to surgery or lesions. This condition disrupts the normal regenerative process of injured muscles, leading to significant loss of muscle function. This study examines the progression of VML injury, approximately 20% of the muscle mass being removed, in the tibialis anterior (TA) muscle of a mouse model over a 15-day post-injury period. The injured muscles exhibited discoloration indicative of reduced blood flow and experienced a decrease in muscle mass throughout the study duration. Furthermore, the maximum force output of the injured TA was significantly lower, …

Text-To-Speech Animation: Generating Visuals Based On Phonetic Spelling, Colin Tomcak

Theses/Capstones/Creative Projects

Speech is a complex field, and remarkably difficult to master. There exist many groups who could use more tools to help improve their pronunciation of English words. The goal of this project was to create a text-to-speech animation program as an addition to our group capstone, Pronunciation Pal. Pronunciation Pal is a web-based application meant to assist those who are deaf or hard of hearing in improving their pronunciation, likely as an addition to therapy with a speech pathologist. This application uses tools like diagrams and references to help users better understand how to pronounce a word. The goal of …

Integrating Galectin-3 Into A Computational Model Of Cardiac Fibrosis Progression, Adam Pieratt

Chemical Engineering Undergraduate Honors Theses

Cardiac fibrosis, a large contributor to heart failure, is the excessive accumulation of extracellular matrix in response to stress or injury. There are no approved treatments for cardiac fibrosis, and targeting specific species involved creates complex problems for drug development, so a computational model of the cardiac fibroblast signaling network can be used to observe the interactions involved in the progression of cardiac fibrosis. In this paper, a new protein called galectin-3 is integrated into this existing model, and connections are established to expand the coverage of the network. The additions are described, simulated using Netflux biological system simulation software, …

Vr Circuit Simulation With Advanced Visualization For Enhancing Comprehension In Electrical Engineering, Elliott Wolbach

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

As technology advances, the field of electrical and computer engineering continuously demands innovative tools and methodologies to facilitate effective learning and comprehension of fundamental concepts. Through a comprehensive literature review, it was discovered that there was a gap in the current research on using VR technology to effectively visualize and comprehend non-observable electrical characteristics of electronic circuits. This thesis explores the integration of Virtual Reality (VR) technology and real-time electronic circuit simulation with enhanced visualization of non-observable concepts such as voltage distribution and current flow within these circuits. The primary objective is to develop an immersive educational platform that makes …

Keratin-Based Film: Waste To Bioplastic, Emma Bond

University Honors College

The solution to plastic lies in alternative materials, like bioplastics. One such possibility is keratin-based films. They are made from sources that are already deemed to be waste and that all regions of the world are abundant in. Manufacturing values a one-size-fits-all solution and keratin being plentiful worldwide fulfills that set standard. The films’ properties, which are important to the basic needs of a package, vary with different additives and the type of keratin used. α-keratin and β-keratin have different strengths and are found in nature in different sources. The resource focused on was chicken feathers, which produce more β-keratin …

Design And Fabrication Of A Carbon Fiber Wheel For The Husker Motorsports Club, Benjamin Bashtovoi, Jordan Chapin, Michael Pineda, Caden Lind, Thomas Crum

Honors Program: Senior Projects (Public)

Every year, the Husker Motorsports team participates in a Formula SAE competition that challenges students to design and manufacture a Formula-style vehicle to compete against colleges from around the world. The Husker Motorsports club has sponsored this senior capstone project to improve the vehicle’s performance by reducing unsprung mass. Unsprung mass reduction has numerous benefits on vehicle dynamics, including improved acceleration, handling, and braking. To achieve these performance improvements, the team developed carbon-fiber composite wheels that weigh less than the current wheel solution and provide better rigidity. The team designed and modeled the wheel according to the 2023-2024 competition car …

Mechanical Property Simulations Of Ploybenzimidazole Membranes., Blake Alexander Clark

Electronic Theses and Dissertations

This work explores mechanical properties of membranes made of polybenzimidazole utilizing molecular simulations. These simulations researchers to narrow down polybenzimidazole membrane compositions to viable candidates. These simulations are quicker than current purely experimental methods. The increase in throughput would be achieved by eliminating compositions that have unfavorable mechanical properties through preliminary simulation work before moving onto experimental methods. Determining polybenzimidazole membranes’ mechanical properties experimentally would, therefore, allow for researchers to speed up research in areas such as fuel cells and electrolyzers that make use of polybenzimidazole membranes. This study uses Materials Studio and the COMPASS III forcefield to perform these …

Characterizing The Molecular And Cellular Changes Of Senescent Cells Induced By Diverse Stressors In 2d And 3d Microenvironments, Apoorva Chauhan

UNLV Theses, Dissertations, Professional Papers, and Capstones

Aging is a risk factor for myriad diseases and is often associated with the accumulation of senescent cells. Cellular senescence, a process of irreversible cell cycle arrest, is associated with various changes in cellular morphology and function. While senescence will occur naturally in a time-dependent manner, it can be prematurely induced by various extrinsic and intrinsic factors. Most senescence studies model cell behavior in two-dimensional (2D) microenvironments; however, these models are not physiologically relevant. In this study, the effects of naturally occurring reactive oxygen species (ROS) hydrogen peroxide (H2O2) and commonly used chemotherapy drugs, doxorubicin and palbociclib, on cellular senescence …

Porcine Computational Modeling To Investigate Developmental Dysplasia Of The Hip, Chia-Yu Yu

Boise State University Theses and Dissertations

While it is well-established that early detection and initiation of treatment of developmental dysplasia of the hip is crucial to successful clinical outcome, research on mechanics of the hip joint during healthy and pathological hip development in infants has been limited. Quantification of mechanical behavior in both the healthy and dysplastic developing joints may provide insight into the causes of developmental dysplasia of the hip and facilitate innovation in treatment options. In this study, subject-specific three-dimensional finite element models of two pigs were developed: one healthy pig and one pig with induced dysplasia in the right hindlimb. The objectives of …

On-Chip Active Pulse-Clamp Stimulation (Apcs) For Rapid Recovery, Charge-Balanced Neural Stimulation, F. N. U. Tala

Boise State University Theses and Dissertations

Neurostimulations are widely utilized to modulate brains and nervous systems functions for therapeutic purposes. Traditional neurostimulation involves applying a direct current delivered to the excitable tissues to elicit neural response. There is a growing demand for a robust, rapid stimulation system that ensures chronic safety through charge balancing in vivo. This dissertation is a compilation of previously published works, detailing various board-level stimulators, an innovative on-chip stimulation technique, and a distributed modelling method.

Chapter one introduces MEDUSA, a cost-effective, multi-functional neurostimulation system capable of achieving multi-channel, arbitrary stimulation for neuroscience research.

Chapter two delves into a scripted distributed model framework …

Utilizing Spatial Transcriptomics To Compare Gene Expression In Volumetric Muscle Loss Injury Recovery, Colton Gattis

Biomedical Engineering Undergraduate Honors Theses

Volumetric Muscle Loss (VML) injuries are known to disrupt the normal regenerative process via fibrosis leading to an extensive permanent loss of muscle function. The specific causation of this disruption remains to be defined; however, with new developments in transcriptomics, genetic trends can be identified across regions of tissue over time. This study follows VML injuries within the tibialis anterior of a mouse model for fifteen days after initial injury to attempt to identify expected transitions in healing. Genetic presence began to become more diversified as recovery progressed from four to fifteen days post injury with spatial clusters becoming globalized …

Photo-Carbon Monoxide Releasing Molecules For Antibacterial Benefits In Vascular Grafts, Beste Caner

Theses and Dissertations

Globally, the annual hemodialysis procedures surpass 1.5 million, emphasizing the vital role of reliable vascular access methods. However, common challenges like access infections and clot-induced blood flow reduction necessitate innovative solutions. This study delved into the potential therapeutic role of carbon monoxide (CO) and its effects on both endothelialization and non-pathogenic bacteria causing infections. The primary focus was evaluating the impact of loading different concentrations of carbon monoxide-releasing molecules (CORMs), specifically CORM diketone 4 (DK4), within 2D spin-coated films on cultured E. coli and endothelial cells. Initial assessments of CO release kinetics from DK4-loaded films demonstrated that the 10% condition …

Memo: Dataset And Methods For Robust Multimodal Retinal Image Registration With Large Or Small Vessel Density Differences, Chiao-Yi Wang, Faranguisse Kahki Sadrieh, Yi-Ting Shen, Shih-En Chen, Sarah Kim, Victoria Chen, Achyut Raghavendra, Dongyi Wang, Osamah Saeedi, Yang Tao

Biological and Agricultural Engineering Faculty Publications and Presentations

The measurement of retinal blood flow (RBF) in capillaries can provide a powerful biomarker for the early diagnosis and treatment of ocular diseases. However, no single modality can determine capillary flowrates with high precision. Combining erythrocyte-mediated angiography (EMA) with optical coherence tomography angiography (OCTA) has the potential to achieve this goal, as EMA can measure the absolute RBF of retinal microvasculature and OCTA can provide the structural images of capillaries. However, multimodal retinal image registration between these two modalities remains largely unexplored. To fill this gap, we establish MEMO, the first public multimodal EMA and OCTA retinal image dataset. …

Denoising Diffusion Probabilistic Models Based Accelerated Mri, Alexander Francis Bugielski

Theses and Dissertations

Magnetic Resonance Imaging (MRI) is a cornerstone in obtaining intricate visualizations of anatomy and physiological processes within the human body. However, its extensive scan duration not only causes patient discomfort but also increases the likelihood of motion-induced artifacts in the images. To address such a challenge, this study investigates deep neural network models for reconstructing high-resolution MRI images from noisy and significantly undersampled data in a supervised learning manner. Specifically, it compares three models: a conventional U-Net, a self-attentive U-Net, and an innovative probabilistic diffusion model that builds upon the self-attentive U-Net architecture. These models are evaluated on their ability …

Investigating Endothelial Damage During Ischemic Stroke Treatment Using In Vitro And Computational Models, Zackary Lorton

Theses and Dissertations

Large vessel occlusion during acute ischemic strokes requires mechanical thrombectomy (MT) procedures using stent retrievers (SR). However, complete clot removal typically takes several attempts, which can amplify endothelial cell injury (EI). This project aims to characterize the extent of EI during MT using an in vitro vascular platform and a finite-element model (FEM). Impact of SR diameter and characterization of SR mechanical forces are assessed and correlated with human umbilical vein endothelial cell (HUVEC) response. HUVECs were seeded on fibronectin (4 µg/cm²) coated true-scale PDMS arterial phantoms with 2.5 mm luminal diameter. Test groups (n=6) either …

Controlled Delivery Of Peptide And Gasotransmitter For Promoting Vascular Endothelialization, Shirin Changizi

Theses and Dissertations

Endothelial cells (ECs) are vital for maintaining proper vascular function and regulating processes such as hemostasis and inflammation. Disruption of endothelial cells integrity can lead to several pathological conditions, including coronary artery disease, vascular cognitive impairment, and dementia (VCID). Alterations in ECs distribution may lead to compromised blood-brain barrier (BBB) function, facilitating the passage of blood components and contributing to conditions such as Alzheimer's disease. Additionally, disruptions in ECs function can lead to early-stage thrombosis and intimal hyperplasia, resulting in graft failure in small-diameter (

This study aimed to develop innovative approaches for drug delivery to the BBB and TEVGs …

Biophysical Model Of Retraction Motor Neurons And Their Modification By Operant Conditioning, Maria Rasheed

Dissertations and Theses (Open Access)

Operant conditioning (OC) is a form of associative learning in which an animal modifies its behavior based on the consequences that follow that behavior. Despite its ubiquity, the underlying mechanisms of OC are poorly understood. Insights into the mechanisms of OC can be obtained by studying Aplysia feeding behavior as it can be modified by OC. This behavior is mediated by a central pattern generator (CPG) network in the buccal ganglia that contains a relatively small number of neurons. This CPG generates rhythmic motor patterns (BMPs) that move food into the gut by closing a tongue-like structure (i.e., radula) during …

An In Vitro Investigation Of Urothelial Cell Function In Response To Hypoxia And Pressure In Relation To Bladder Outlet Obstruction, Britney Hudson

All Dissertations

Bladder outlet obstruction (BOO) is a prevalent urological condition and can be characterized by the presence of lower urinary tract symptoms (LUTS), such as hesitancy, weak stream, and nocturia. The main cause of BOO is a partial blockage of the urethra, which results in elevated voiding pressure, high storage pressure, and tissue ischemia, which are thought to be the triggers of bladder inflammation and subsequent fibrosis. Often patients do not seek treatment until the conditions get severe. Thus, it would be ideal to have an early diagnostic tool to detect changes in the bladder due to BOO. Extracellular vesicles (EVs) …

Toxicokinetics And Toxicodynamics Of Radium-226 In An Estuarine Sentinel Species Geukensia Demissa, Sarah Donaher

All Dissertations

The historical use of radioluminescent objects, most notably those containing radium-226 (²²⁶Ra)-based paint, has contributed to contemporary environmental contamination of radioactive material, often near naval installations or other military-associated coastal sites. The risk to both human and environmental health from this small-scale, discrete radioactive material is challenging to predict due to large uncertainties in the source terms, bioavailability, and toxicity of these objects. The objective of this study was to provide information on the accumulation and toxicity of acute ²²⁶Ra exposure in a sentinel species to improve risk assessments for small-scale, coastal radiological contamination. The sentinel species …

Additive Manufacturing With Bioresorbable Polymers: Process-Structure-Property Relationships For Biomimetic Tissue Scaffolds, Clayton Joseph Culbreath

All Dissertations

Tissue engineering has a base requirement of scaffold structures to support cell growth, proliferation, and regeneration. However, attempts to use artificial scaffold structures have often fallen short of clinical needs to justify the change away from the established, biologic-based current standard of care. Based on the limited number of successful tissue scaffolds produced by material extrusion modes of additive manufacturing, fused filament 3d printing and electrospinning, critical design specifications for a tissue scaffold are six minimum requirements: 1) biocompatibility, 2) porosity, 3) mechanical properties, 4) bioresorbable medical grade materials, 5) bioactivity, and 6) appropriately scaled production methods compliant with medical …

Tin-Silver As A Novel Biodegradable Metallic Biomaterial, Charley Goodwin

All Dissertations

The Essure device is a non-hormonal, minimally-invasive, permanent female sterilization implant, removed from the market due to an increase in adverse events, hypothesized to be caused by corrosion of the Sn-Ag component of the implant. The goals of this dissertation were to first develop implant retrieval methods for Essure devices and surrounding tissue, documenting signs of degradation and metallic degradation products, then to characterize the electrochemical behavior of Sn-Ag in biologically representative environments and finally, to assess the biological interaction of Sn-Ag. Retrieval analyses developed successful methods, qualifying the degree of corrosion, primarily of the Sn-Ag component and finding Sn …

Modeling Sex-Specific Changes In Myocardial Fibrosis, Grace Martin

Chemical Engineering Undergraduate Honors Theses

Heart disease the leading cause of death for both men and women in the United States. Cardiac fibrosis, or accumulation of extracellular matrix proteins in the heart, can occur after a heart attack and increase the risk for further complications. Current treatments for heart disease do not include extracellular matrix regulators, partly due to the complicated signaling network responsible for the production of these proteins. By using a computational model of the signaling network in cardia fibroblasts, the relationship between particular molecules and downstream extracellular matrix production can be examined.

Biological sex is an important factor for cardiac health and …

A Smart Hybrid Enhanced Recommendation And Personalization Algorithm Using Machine Learning, Aswin Kumar Nalluri

Electronic Theses, Projects, and Dissertations

In today’s age of streaming services, the effectiveness and precision of recommendation systems are crucial in improving user satisfaction. This project introduces the Smart Hybrid Enhanced Recommendation and Personalization Algorithm (SHERPA) a cutting-edge machine learning approach aimed at transforming how movie suggestions are made. By combining Term Frequency Inverse Document Frequency (TF-IDF) for content based filtering and Alternating Squares (ALS) with Weighted Regularization for filtering SHERPA offers a sophisticated method for delivering tailored recommendations.

The algorithm underwent evaluation using a dataset that included over 50 million ratings from 480,000 Netflix users encompassing 17,000 movie titles. The performance of SHERPA was …

Mesenchymal Stromal Cell Response To Degenerated Intervertebral Disc-Like Ph, Kyle Cannon

All Dissertations

Intervertebral disc degeneration (IVDD) has become increasingly prevalent and is a common contributing factor to low back pain. There are currently no clinical treatment options for IVDD that alleviate the symptoms of IVDD while simultaneously promoting repair of IVD tissue. One treatment option being explored is intradiscal administration of mesenchymal stromal cells (MSCs). However, the microenvironment of the degenerating IVD places significant stress on both native IVD cells and implanted cells. There are several questions that need to be addressed which may help further inform the development of efficacious intradiscal MSC therapies for IVDD. These questions include: 1) Do MSCs …

Novel Nucleus Pulposus Biomaterial Development And Low Field Mri Assessment For Intervertebral Disc Degeneration, Mario Krussig

All Dissertations

Intervertebral disc degeneration (IVDD) is a prominent pathology in the modern world that causes debilitating pain for many patients. The onset of IVDD occurs in the nucleus pulposus (NP). NP biomaterials will play a vital role in mitigating the progression of IVDD. Within this work, we sought to synthesize a solubilized extracellular matrix (ECM)-based NP biomaterial. Utilizing pepsin or urea extraction, bovine NP ECM was successfully solubilized (SBNPs). SBNP formulations were characterized biochemically, evaluated for cytotoxicity, and down-selected for front-running formulations. Leading candidate SBNPs were incorporated into an alginate bead biomaterial model to determine the potential bioactivity with human adipose-derived …

Tracking Perfluoroalkyl Substances From Wastewater Influent To Its Accumulation In Vegetables And Forage Grass, Simon Kozik

All Graduate Theses and Dissertations, Fall 2023 to Present

Per and poly-fluorinated alkyl substances (PFAS) are a class of chemicals that are persistent in the environment. PFAS was found in wastewater, which can be used after wastewater treatment for irrigation water, and in the biosolids that can be mixed with soils to provide nutrients and generally improve soil quality. This study found when wastewater was used it increases the level of PFAS in vegetables and forage grass. PFAS concentrations were tracked from the influent of the wastewater treatment plant to the effluent, to the irrigation water, to the soil, and finally into the vegetable and forage grass grown on …

What Is Biological Engineering? – A Magazine, Morgan Christensen

Undergraduate Honors Capstone Projects

Biological Engineering is one of the less commonly known fields of engineering and can be challenging to describe to someone outside the discipline. The most common question I've been asked during my undergraduate career is "What is biological engineering?". My answer has changed throughout my time at Utah State University as I've had more experiences within the discipline. This project focuses on answering this question in the format of a magazine to help bridge the gap between those in the discipline and a general audience. By using a magazine as the format, the content must be organized and written in …