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Flanking Sequences Modulate Diepoxide Cross-Linking Efficiencies At The 5'-Gnc Sste, Gregory A. Sawyer

Honors Theses

Diepoxybutane, diepoxyoctane, and mechlorethamine are cytotoxic DNA crosslinking agents that vary in their carcinogenic versus chemotherapeutic potentials. Interstrand cross-linking occurs between the N7 positions of deoxyguanosine residues on opposite strands of the DNA duplex. Each synthetic DNA oligomer used in this study contained four 5'-N\GN2CN3 sites (within a 32 base sequence) and we have systematically varied the bases in the N1 and N2 positions to determine the resulting cross-linking efficiencies of each cytotoxic agent. Each duplex was 5' -end labeled and incubated with cross-linking agent. Interstrand cross-links were purified through denaturing polyacrylamide gel electrophoresis and then subjected to piperidine cleavage. …

Analysis Of Phycotoxin And Mycotoxin, Contaminants In Foods, Using Liquid Chromatography - Mass Spectrometry Techniques, Ana Brana Magdalena

Theses

The impact of phycotoxins and mycotoxins on human and animal health are of important concern for worldwide authorities and the scientific community. Liquid chromatography-mass spectrometry (LC-MS) techniques have been developed, optimised and validated for the analysis of these toxins.

Phycotoxins are potentially toxic substances, which are produced by marine phytoplankton and which may accumulate in shellfish or finfish. Azaspiracid poisoning (AZP) is a recently discovered syndrome that has been implicated in several incidents of human intoxications. A study was undertaken to examine the distribution of azaspiracids (AZA) in scallops {Pecten maximiis) and mussels {Mytiliis edulis). Domoic acid (DA) is an …

Synthesis Of Montiporynes A And B, Traci Jenelle Speed

Honors Theses

This thesis reports the first complete synthesis of monriporynes A and B. isomeric diacetylenes that bear α, β unsaturated ketone functionalities. Recently isolated from the stony coral Montipora sp. these compounds are reported to possess in vitro cytotoxic activity against several human solid tumor cells. We have synthesized both isomers in three simple steps. In the first step, l-iodononyne was prepared by reacting 1-nonyne with N-iodosuccinimide and a catalytic amount of silver nitrate. This iodoalkyne was then coupled with propargyl alcohol using copper iodide as the catalyst to give 2,4dodecadiynyl alcohol. Finally, the diacetylenic alcohol was subjected to the Swern …

Quantitative Analysis Of Diepoxybutane Damage Within The Chicken Β-Globin Domain, André M. Pilon

Honors Theses

In industrial polymer and synthetic rubber production facilities, workers are exposed to 1,3-butadiene. This compound is converted in vivo to 1,2,3,4-diepoxybutane (DEB) and has been linked to increased incidences of cancer in these individuals. Carcinogenesis has been attributed to formation of DEB induced DNA interstrand cross-links. Previous studies have demonstrated that DEB cross-links deoxyguanosine residues within 5'-GNC sequences in synthetic DNA, in restriction fragments, and in defined sequence nucleosomes. The current study utilized the polymerase chain reaction (PCR) to examine DEB damage frequencies within nuclear genes, found within "open" regions of chromatin, as compared to regions of unexpressed sequence that …

Double Stranded Dna-Binding Studies Of Potential Rhodium(Ll) Antitumor Complexes, Amity Elizabeth Burr

Honors Theses

In 1952, Dwyer and coworkers began testing a series of metal complexes for potential inhibition of cancer cell proliferation in animals.[l] The complexes tested were unsuitable for such studies due to their high toxicity. Therefore, no further work was done on the project. However, in 1965, Rosenberg and coworkers revisited the possibility of potential metal-based drugs. Serendipitously, they discovered that cis-diamminedichloroplatinum(lI) (cisplatin) inhibits cell division in E. coli.[2] Further studies of this and other platinum compounds revealed inhibition of tumor cell lines sarcoma 180 and leukemia LI2l0 in mice.[l] Cisplatin was approved by the Food and Drug Administration in 1970 …

Synthesis And Characterization Of A Polypyridyl Ru(Ii)-Alloxazine Complex For Adsorption On Tio2-Coated Ito Electrodes, Manisha A. Patel

Masters Theses

TiO₂-coated conducting glass electrodes can be modified by attachment of redox-active molecules to the TiO₂ surface. This thesis describes the synthesis and characterization of a polypyridyl Ru(II) complex that can be covalently bound to a TiO₂ surface through the carboxylate groups of 2,2'-bipyridine-4,4' -dicarboxylic acid, H₂dcbpy. In addition, the bound complex contains a redox-active alloxazine derivative, pptd, which is capable of 2e^-/2H⁺ transfers. Thus the TiO₂-coated electrode is modified with a transition metal complex capable of shuttling H-atoms to substrates in solution. Synthesis of the PF₆^- salt …

Dmap As A Catalyst For Carbon Acylation: Elucidation Of Mechanistic Pathway, Including Spectral Characterization Of The Putative Reactive Intermediate, Jagadish K. Boppisetti

Masters Theses

3-Phenylbenzofuranone, when deprotonated with sodium hydride, forms an extended enolate system which, when treated with excess alkyl chloroformates, affords only oxygen-acylated products, as opposed to the usually desired carbon-functionalized derivatives. It was discovered that such molecules, when treated with a catalytic amount of 4- (N, N-dimethylamino)pyridine (DMAP), rearrange quantitatively to the carbon acylated isomers.

These migrations, which are accompanied by a deep blue color, are proposed to involve a reactive intermediate. This intermediate, which is postulated as an ion pair charge transfer (IPCT) complex, has been closely studied in order to gain a better understanding of the …

Application Of A Three-Stage Sequential Extraction Procedure For The Determination Of Extractable Metal Contents In Highway Soils, Şeri̇fe Tokalioğlu, Şenol Kartal, Gökhan Bi̇rol

Turkish Journal of Chemistry

A sequential extraction procedure, a three-step protocol proposed by the Standards, Measurements and Testing programme (SM & T--formerly BCR) of the European Union, was applied to soil samples for the determination of metals (Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn). This procedure provides measurements of extractable metals from media such as acetic acid (0.11 mol L^{-1}), hydroxylammonium chloride (0.1 mol L^{-1}) and hydrogen peroxide (8.8 mol L^{-1}) plus ammonium acetate (1 mol L^{ - 1}), which are exchangeable, reducible and oxidisable metals, respectively. Analyses were carried out using flame atomic absorption spectrometry (FAAS). The results obtained from …

Synthesis Of New Antimicrobial Agents; Amide Derivatives Of Pyranones And Pyridinones, Mutlu Di̇lsi̇z Aytemi̇r, Robert C. Hider, Di̇lek Demi̇r Erol, Meral Özalp, Meli̇ke Eki̇zoğlu

Turkish Journal of Chemistry

In this study, 4(1H)-pyridinones with an amide function in Position 2 of the pyridinone ring showed antimicrobial activity. The synthesis and the biological properties of some novel amide derivatives of pyran-4(1H)-one and 4(1H)-pyridinone have been reported. Amide derivatives of pyran-4(1H)-one and 4(1H)-pyridinone were prepared using two different methods. Antimicrobial activities were determined as MIC values using the microdilution broth method against the bacteria Staphylococcus aureus, Enterococcus faecalis, Escherichia coli and Pseudomonas aeruginosa and the fungi Candida albicans, Candida krusei and Candida parapsilosis. Compounds 6 and 9 exhibited the best inhibitor activity against S. aureus.

Effects Of A Yec Apologetics Class On Student Worldview, David A. Dewitt, Steve Deckard, Sharon E. Cargo

Faculty Publications and Presentations

Creationism is a significant component of an overall Christian worldview. A Creation Worldview Test (CWT) was administered to students both before and after completion of a required Apologetics course dealing with the creation/evolution controversy. Pre-test analysis revealed that incoming students tend to have a creationist worldview, however their CWT scores reflected a degree of uncertainty or neutrality on scientific creation and the age of the earth. Post-test analysis showed a significant shift toward a young earth creationist (YEC) view. Implications for teaching apologetics and development of a Creationist worldview based on a Six-day Young Earth perspective were explored and identified.

Development Of A Simple Method To Detect And Quantify Benzoylecgonine, A Cocaine Metabolite, In Urine, Kylee E. Billings '03

Honors Projects

Benzoylecgonine (BE) is the most abundant metabolite of cocaine found in the human body. Analysis of BE in urine by gas chromatography/mass spectrometry is the most common method currently used to detect cocaine abuse. This current method is costly and time consuming, so the investigation of an easier and more cost-effective approach is the goal of this research. Because BE is a zwitterion, it is highly soluble in water and very difficult to extract from urine. Once the pKa values of BE are determined, either the cation or anion form of BE can be formed from the zwitterion by adjusting …

Phylogenomic Identification Of Five New Human Homologs Of The Dna Repair Enzyme Alkb, Michal A. Kurowski, Ashok S. Bhagwat, Grzegorz Papaj, Janusz M. Bujnicki

Wayne State University Associated BioMed Central Scholarship

Abstract

Background

Combination of biochemical and bioinformatic analyses led to the discovery of oxidative demethylation – a novel DNA repair mechanism catalyzed by the Escherichia coli AlkB protein and its two human homologs, hABH2 and hABH3. This discovery was based on the prediction made by Aravind and Koonin that AlkB is a member of the 2OG-Fe²⁺ oxygenase superfamily.

Results

In this article, we report identification and sequence analysis of five human members of the (2OG-Fe²⁺) oxygenase superfamily designated here as hABH4 through hABH8. These experimentally uncharacterized and poorly annotated genes were not associated with the AlkB family …

Table Of Contents

Journal of the South Carolina Academy of Science

No abstract provided.

President's Message

Journal of the South Carolina Academy of Science

No abstract provided.

Histological Effect Of Ascocotyle Tenuicollis (Digenea: Heterophyidae) Metacercarial Infection On The Heart Of Fundulus Heteroclitus (Teleostei: Cyprinodontidae), Toni Hicks, Edna Steele

Journal of the South Carolina Academy of Science

No abstract provided.

Par Mediation Of Thrombin-Induced Effects On Motoneurons, Nadim Salman, Drew Watkins, Kate Hamel, Lakisha Gadsden, Sarah Funderburk, Victoria Turgeon

Journal of the South Carolina Academy of Science

No abstract provided.

Embryogenesis In The Japanese Medaka, Oryzias Latipes, Laura Harris Harris, Lisa Sims, Roxann Stachiw

Journal of the South Carolina Academy of Science

No abstract provided.

2002 & 2003 Annual Meeting Extended Abstracts

Journal of the South Carolina Academy of Science

No abstract provided.

South Carolina Statewide Science Safety Project., Linda Sinclair, Jack Gerlovich, Rahul A. Parsa

Journal of the South Carolina Academy of Science

No abstract provided.

Some Notes On Multiplicative Congruential Random Number Generators With Mersenne Prime Modulus 261-1., James Harris

Journal of the South Carolina Academy of Science

No abstract provided.

Maternal And Sibling Influences On Seed Germination Of Aegilops Triuncialis Erin, Erin Scott, Andrew R. Dyer

Journal of the South Carolina Academy of Science

No abstract provided.

Scas Officers And Council Members 2003 - 2004

Journal of the South Carolina Academy of Science

No abstract provided.

Critical Thinking And Biology Instruction., David J. Stroup, John L. Frola

Journal of the South Carolina Academy of Science

No abstract provided.

Investigation Of Model Cell Membrane Disruption Via Fluorescence And Light Scattering Techniques, Imara Charles

Seton Hall University Dissertations and Theses (ETDs)

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Utilizing Structure Property Correlations To Predict And Analyze Two Derivatives Of An Ampicillin Homologous Series, C. Malesa, J. Stoddard, Ronald Bartzatt

Chemistry Faculty Publications

Structure Property Correlation methods such as regression analysis and pattern recognition are applied to predict the molecular properties of two members of an ampicillin homologous series. The pentyl and hexyl esters of ampicillin are also evaluated for their similarity to other penicillins by use of multiple regression, contingency tables, cluster analysis, correspondence analysis, self organizing tree algorithms, factor analysis, principal component analysis, box plots, and other graphing methods. Other members of the homologous series include methyl, ethyl, propyl, and butyl esters of ampicillin which have been previously synthesized and tested in tissue culture against Escherichia coli. All of the tested …

Synthesis, Characterization, And Application Of Water-Soluble Chiral Calix[4]Arene Derivatives In Spectroscopy And Capillary Electrokinetic Chromatography, Kim Hamilton

LSU Doctoral Dissertations

This dissertation is an account of the synthesis, characterization, and application of novel water-soluble chiral calixarenes in spectroscopy and capillary electrophoresis. It is divided into four sections. The first part describes the synthesis and nuclear magnetic resonance (NMR) characterization of four p-t-butylcalix[4]arenes bearing L-amino acid moieties on their lower rims (CX4-AA). The structure and conformation of the derivatives have been determined using one- and two-dimensional NMR techniques. Proton and carbon-13 spectra show that the derivatives are tetra-substituted and adopt a cone conformation. The preparation and characterization of silica-bonded calixarene stationary phases for capillary electrochromatography is also reported in Chapter 2. …

Design, Synthesis, And Applications Of Bio-Derived Crosslinking Monomers For Molecular Imprinting, Martha Sibrian-Vazquez

LSU Doctoral Dissertations

Most of the research in the field of molecular imprinting has been focused on the development of new functional monomers, in order to improve the molecular recognition properties afforded by these materials. The role of the crosslinking monomer has often been overlooked, since it is considered an inert component that only provides a scaffold to support the binding sites. However, the crosslinking monomer represents a high percent (80-90%) of the composition of molecularly imprinted polymers (MIPs), which can have a large influence on the MIPs properties. This research addresses the design, synthesis, and applications of new crosslinking monomers for molecular …

The Aqueous Phase Yield Of Alkyl Nitrates From Roo+No: Implications For Photochemical Production In Seawater, Elizabeth E. Dahl, Eric S. Saltzman, Warren J. De Bruyn

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Alkyl nitrates have been observed in remote oceanic regions of the troposphere and in the surface ocean. The mechanism for their production in the oceans is not known. A likely source is the reaction of ROO + NO (where R is an alkyl group). Steady-state laboratory experiments show that alkyl nitrates are produced in the aqueous phase via this reaction, with branching ratios of 0.23 +/- 0.04, 0.67 +/- 0.03, and 0.71 +/- 0.04 for methyl, ethyl, and propyl nitrate respectively. The branching ratios in aqueous solution are significantly higher than in the gas phase. Irradiation of surface seawaters yield …

Urer, The Transcriptional Activator Of The Proteus Mirabilis Urease Gene Cluster, Is Required For Urease Activity And Virulence In Experimental Urinary Tract Infections, Jonathan D. Dattelbaum, C. Virginia Lockatell, David E. Johnson, Harry L.T. Mobley

Chemistry Faculty Publications

Proteus mirabilis, a cause of complicated urinary tract infection, produces urease, an essential virulence factor for this species. UreR, a member of the AraC/XylS family of transcriptional regulators, positively activates expression of the ure gene cluster in the presence of urea. To specifically evaluate the contribution of UreR to urease activity and virulence in the urinary tract, a ureR mutation was introduced into P. mirabilis HI4320 by homologous recombination. The isogenic ureR::aphA mutant, deficient in UreR production, lacked measurable urease activity. Expression was not detected in the UreR-deficient strain by Western blotting with monoclonal antibodies raised against UreD. Urease …

Determination Of Iron(Ii) Concentrations In Seawater Using Flow Injection Analysis And Chemiluminescence, Mark Keller Kinnan

All Volumes (2001-2008)

Phytoplankton are a major consumer of carbon dioxide. In theory, if phytoplankton are limited in number, more carbon dioxide will be present in the atmosphere and contribute to the greenhouse effect. An increased concentration of iron would, therefore, promote phytoplankton blooms that would consume carbon dioxide. There would then be less carbon dioxide in the atmosphere to prevent heat from radiating away from earth. In 1996, an iron seeding experiment was performed in the open ocean to determine whether phytoplankton density would be increased. Phytoplankton rapidly increased in number. The research project results suggested that iron seeding the polar oceans …