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What Science Can And Cannot Offer To A Religious Narrative, Ursula W. Goodenough

Biology Faculty Research

A molecular/cell biologist offers perspectives on the contributions that the scientific worldview might and might not make to religious though. It is argued that two essential features of institutionalized religions–their historical context and their supernatural orientation—are not addressed by the sciences, nor can the sciences contribute to the art and ritual that elicit states of faith and transcendence. The sciences have, however, important stories (myths) to offer, stories that have the potential to unify us, to tell us what is sacred, what has meaning, and how we might best proceed.

This paper, in slightly different form, was first presented before …

A Small Family Of Elements With Long Inverted Repeats Is Located Near Sites Of Developmentally Regulated Dna Rearrangement In Tetrahymena Thermophila, John M. Wells, Jay Lee Edward Ellingson, Diana M. Catt, Patricia J. Berger, Kathleen M. Karrer

Biological Sciences Faculty Research and Publications

Extensive DNA rearrangement occurs during the development of the somatic macronucleus from the germ line micronucleus in ciliated protozoans. The micronuclear junctions and the macronuclear product of a developmentally regulated DNA rearrangement in Tetrahymena thermophila, Tlr1, have been cloned. The intrachromosomal rearrangement joins sequences that are separated by more than 13 kb in the micronucleus with the elimination of moderately repeated micronucleus-specific DNA sequences. There is a long, 825-bp, inverted repeat near the micronuclear junctions. The inverted repeat contains two different 19-bp tandem repeats. The 19-bp repeats are associated with each other and with DNA rearrangements at seven locations …

Etiology Of Experimental Calcium Oxalate Monohydrate Nephrolithiasis In Rats, W. C. De Bruijn, E. R. Boevé, P. R. W. A. Van Run, P. P. M. C. Van Miert, J. C. Romijn, C. F. Verkoelen, L. C. Cao, F. H. Schröder

Scanning Microscopy

In a rat-model system, tubular crystal retention as a possible mechanism for the etiology of nephrolithiasis in man, was studied by conventional transmission electron microscopy. The animals were supplied for nine days with a crystal-inducing diet, with ethylene glycol plus NH₄Cl in their drinking-water. After this induction period, a two day regime with fresh drinking-water was included, to allow crystals to be removed by spontaneous crystalluria. After aldehyde fixation of the rat kidneys, large crystals were seen inside the tubular lumen. The crystals were attached to cell surfaces and covered by neighboring epithelial cells. Some crystals were overgrown …

Electronic Trap Microscopy - A New Mode For Scanning Electron Microscopy (Sem), H. -J. Fitting, Th. Hingst, R. Franz, E. Schreiber

Scanning Microscopy

Insulating layers on conducting substrate are investigated by means of secondary electron field emission SEFE in a digital SEM. The kinetics of charge storage and release with time and temperature are controlled and recorded by an external computer.The evaluation is performed pixel-wise with respect to electronic trap concentration n_t0, trap capture cross section σ_c and thermal activation energy E_t. Mapping of these trap parameters indicates hidden inhomogenities, defects and pre-treatments of the dielectric layers as well as the pattern of thermal bleaching and release of electrons. The latter ones appear as inhomogeneous processes starting with …

Sequencing Of Proteins Extracted From Stones, J. P. Binette, M. B. Binette

Scanning Microscopy

Proteins from urinary tract and gallbladder stones were extracted and characterized to determine the composition of the matrix and possibly unravel the role of the organic phase in stone formation. Proteins from crushed stones were extracted by electrodialysis and concentrated in the Amicon centricon cartridge or by lyophilization after dialysis against distilled water. Aliquots were first analyzed by isoelectric focusing in gel and if suitable subjected to two-dimensional (2D) electrophoresis. The most promising spots were harvested and the N-terminal amino acids sequenced, thus providing maximum information with minimum expenditure of material. The 2D separations and amino acid sequences of several …

Methodological Aspects Of Spontaneous Crystalluria Studies In Calcium Stone Formers, C. A. Bader, A. Chevalier, C. Hennequin, P. Jungers, M. Daudon, O. Beaugendre, M. P. Hoarau

Scanning Microscopy

Despite nearly a half-century of study, the clinical value of spontaneous crystalluria (Cx) examinations in calcium stone formers (CaSF) is still uncertain. The analytical complexity of urine particle study is largely responsible for this situation. As a result, there is no consensus regarding technical methods in Cx with several techniques for urine sampling and three different instruments currently used for particle study, namely, particle counting (PC), light microscopy (LM) and petrographic microscopy (PM). In this work, we first examined urine sampling and instrument methods regarding their appropriateness for Cx studies. Then we performed a comparative analysis of Cx studies in …

Arrangement Of Elastic Fibres In The Integument Of Domesticated Mammals, W. Meyer, K. Neurand, R. Schwarz, T. Bartels, H. Althoff

Scanning Microscopy

The hairy skin of important domesticated mammals (12 species) was studied with scanning electron microscopy, transmission electron microscopy, laser scanning microscopy, and several light microscopical methods, to obtain more information about three-dimensional elastic fibre arrangement. It was obvious that there is a basic construction scheme of the elastic fibre meshwork as present in the upper and mid-dermis, with special regard to the size, number, and grouping of hair follicles. In the densely-haired species, in particular, a typical elastic mat with horizontal fibres is formed. In many of the sparsely-haired animals, the upper and mid-dermis show a sponge-like elastic system. In …

General Pattern And Morphological Specializations Of The Avian Cochlea, Franz Peter Fischer

Scanning Microscopy

In different bird species, there is a common pattern in the hair-cell morphology and innervation of the basilar papilla; the absolute values, however, are species-specific. In the barn-owl papilla, an extreme being case, the basal high-frequency part of the papilla is greatly expanded. In this behaviorally most important frequency range of the barn owl, the number of afferent nerve terminals to neural hair cells is extensively increased. Instead of about 2 afferent terminals as in other species, up to 20 afferents are present. In the bird species studied (chicken, starling, emu, barn owl), the area of the afferent nerve terminals …

Ultrastructural Patterns Of Cell Damage And Death Following Gamma Radiation Exposure Of Murine Erythroleukemia Cells, R. Di Pietro, E. Falcieri, L. Centurione, M. A. Centurione, G. Mazzotti, R. Rana

Scanning Microscopy

Radiation causes damage to cell surface membranes, cytoplasmic organelles, and the nuclear process of DNA synthesis and repair, and this eventually results in different modes of cell death. In this study we examined murine erythroleukemia (MEL) cells, exposed to 15 and 60 Gy of 10 MeV photonic energy, and left in culture for up to 96 hours. Electron microscopical analysis was performed on conventionally embedded samples and freeze-fracture replicas, in order to detect ultrastructural patterns of cell damage and death. Of interest was the observation of chromatin condensates, nuclear membrane associations and nuclear pore redistribution during early apoptosis. Pronounced rearrangements …

The Role Of Enzyme Activation State In Limiting Carbon Assimilation Under Variable Light Conditions, Gretchen F. Sassenrath-Cole, Robert W. Pearcy, Scott J. Steinmaus

Biological Sciences

The mechanisms regulating transient photosynthesis by soybean (Glycine max) leaves were examined by comparing photosynthetic rates and carbon reduction cycle enzyme activities under flashing (saturating 1 s lightflecks separated by low photon flux density (PFD) periods of different durations) and continuous PFD. At the same mean PFD, the mean photosynthetic rates were reduced under flashing as compared to continuous light. However, as the duration of the low PFD period lengthened, the CO₂ assimilation attributable to a lightfleck increased. This enhanced lightfleck CO₂ assimilation was accounted for by a greater postillumination CO₂ fixation occurring after the …

Disparate Rates Of Molecular Evolution In Cospeciating Hosts And Parasites, M. S. Hafner, P. D. Sudman, F. X. Villablanca, T. A. Spradling, J. W. Demastes, S. A. Nadler

Biological Sciences

DNA sequences for the gene encoding mitochondrial cytochrome oxidase I in a group of rodents (pocket gophers) and their ectoparasites (chewing lice) provide evidence for cospeciation and reveal different rates of molecular evolution in the hosts and their parasites. The overall rate of nucleotide substitution (both silent and replacement changes) is approximately three times higher in lice, and the rate of synonymous substitution (based on analysis of fourfold degenerate sites) is approximately an order of magnitude greater in lice. The difference in synonymous substitution rate between lice and gophers correlates with a difference of similar magnitude in generation times.

Analysis Of The Distribution And Molecular Heterogeneity Of The Ospd Gene Among The Lyme Disease Spirochetes: Evidence For Lateral Gene Exchange, Richard T. Marconi, D. Scott Samuels, Robert K. Landry, Claude F. Garon

Biological Sciences Faculty Publications

Analysis of the ospD gene has revealed that this gene is not universal among Lyme disease spirochete isolates. The gene was found to be carried by 90, 50, and 24% of the Borrelia garinii, B. afzelii, and B. burgdorferi isolates tested. Size variability in the ospD-encoding plasmid was also observed. Sequence analysis has demonstrated the presence of various numbers of a 17-bp repeated sequence in the upstream control (promoter) region of the gene. In addition, a region within the coding sequence where various insertions, deletions, and direct repeats occur was identified. ospD gene sequences from 31 different isolates were determined …

Glycol Methacrylate Embedding And Microwave Staining For Light Microscopy Of The Mouse Cochlea, Bharti Katbamna, Atha Ralston

Scanning Microscopy

This study examined the utility of a methacrylate-based embedding medium and microwave staining for light microscopic quantification of hair cells and spiral ganglion cells in the mouse cochlea. The most important phase of the preparation process involved slowing down the polymerization process. The tissue molecules so locked within the plastic matrix produced excellent preservation of the organ of Corti and adjacent structures including the spiral ganglion, as well as tissue ionic charges. Excitable by microwaves, these ionic charges accelerated the movement of the basic dye (hematoxylin) into the tissue, reducing the time for this segment of the staining process from …

Changes In Immunoglobulin Levels In Zinc-Deficient Mice Infected With Trypanosoma Musculi, Patricia Humphrey, Clarence Lee, Mohammad Ashraf

Department of Biology Faculty Publications

A metabolic imbalance technique was used to study the effects of zinc deficiency on immunoglobulin levels in mice infected with Trypanosoma musculi or immunized with parasite products. Zinc-deficient mice developed higher numbers of parasitemia earlier and exhibited prolonged infection. Irrespective of the diet, higher IgG1, IgG2b, and IgM levels, lower IgG2a and IgA levels, and uniform IgG3 levels were exhibited primarily by mice infected with T musculi and to a lesser extent by mice immunized with parasite products. Zinc-deficient mice showed smaller increases in IgG1 and IgM, but larger gains in IgG2b compared with mice on full-complement and pair-fed diets. …

The Toxicity Of Cadmium To The Aquatic Amphibian, Xenopus Laevis, Sharon S. Millirons

Master's Theses

Cadmium toxicity is poorly understood but is a potentially serious environmental pollutant. This study was initiated to determine the effect of significant concentrations of cadmium on a readily available aquatic laboratory organism.

The lethal concentration (LC50) for 50 percent of I week old Xenopus laevis tadpoles was determined to be 0.1 ppm CdCI 2. For 5 week old animals, the average LC50 was determined to be 0.98 ppm. Thus, cadmium poses greater toxic threats to the early developmental stages. Moreover, these concentrations of cadmium exceed those commonly found in the nation's water supply. Histological examination suggested that the main site …

Plumage Variation, Plasma Steroids And Social Dominance In Male House Finches, James R. Belthoff, Alfred M. Dufty Jr., Sidney A. Gauthreaux Jr.

Biology Faculty Publications and Presentations

In male House Finches (Carpodacusm exicanus), the extent and color of plumage varies depending on access to carotenoid pigments. "Colorful" males exhibit extensive red pigmentation, while less colorful (i.e., "drab") males exhibit carotenoid pigmentation over a smaller percentage of their plumage, pigmentation of a color besides red (e.g., yellow, gold, orange, or pink), or both. One explanation for maintenance of plumage variation is that it reliably reflects social status, allowing males to correctly assess their status in relation to others and avoid or minimize costly fights. Social relationships may also be related to endogenous factors, such as circulating levels of …

Expression Of Integrated And Methylated Hiv-Ltr In Human T-Cells And Monkey Kidney Cells By Frog Virus 3 Infection, Celene M. Spangler

Masters Theses

DNA methylation has been implicated in the suppression of transcription of a large spectrum of eukaryotic genes. Frog virus 3 (FV3) contains genomic DNA that is the most extensively methylated of all known animal viruses. However, FV3 gene expression is tightly regulated in a sequential fashion in infected cells. Therefore, FV3 must have evolved mechanism(s) to overcome the inhibitory effects of DNA methylation. FV3 has been shown to induce expression of methylated foreign genes in transient transfections. This study was designed to establish if this FV3 induced expression of methylated genes could be demonstrated in stable cell lines which contain …

Effects Of Furosemide And Oleic Acid On Thyroxine Binding To Isolated Pairs Of Thyroxine Binding Serum Proteins, Deborah Hustead

Loma Linda University Electronic Theses, Dissertations & Projects

Dosage dependent binding inhibition and redistribution of thyroxine (T₄) between three pairs of thyroxine binding serum proteins, TBG-TTR, TBG-albumin and TTR-albumin, by furosemide (0.0 to 1.0 mol/L) and oleic acid (0.0 to 0.10 mol/L) were studied using equilibrium dialysis with purified binding proteins at concentrations 1/200 of levels in normal human sera, separated across the dialysis membrane and competing for T₄.

Furosemide (1.0 mol/L) reduced TBG bound T₄ in both the TBG-TTR system and TBG-albumin system (>90% decrease) and inhibited T₄ binding to TTR in the TTR-albumin system (68% decrease) and to albumin …

The Effect Of Insulin Mimetics On Enzymes Of Fatty Acid Biosynthesis, Eric A. Berg

Masters Theses

Fatty acid biosynthesis, an insulin regulated pathway, is the process of producing fatty acid chains from 2 and 3 carbon units. Two enzymes in this pathway that insulin affects are glucose-6-phosphate dehydrogenase (G6PDH) and fatty acid synthase (FAS). Sodium vanadate and sodium selenate have demonstrated insulin-like effects in several tissue and cell types. These mimetic effects include increasing glucose transport, regulating glycolytic enzymes, normalizing plasma glucose levels and activities of insulin regulated enzymes in diabetic rats. Our goal was to examine effects of sodium vanadate and sodium selenate on fatty acid biosynthesis in two insulin responsive systems: Isolated rat hepatocytes …

Imaging Of Local Thermal And Electrical Conductivity With Scanning Force Microscopy, M. Maywald, R. J. Pylkki, L. J. Balk

Scanning Microscopy

The evaluation of thermal and electrical properties has been demonstrated using a scanning force microscope under ambient air condition. For the first time, the investigation of thermal conductivity on a chemical vapor deposited (CVD) grown diamond surface has been performed with a lateral resolution below 200 nm. Depending on the growing parameters, structures consisting of lines of different thicknesses and spacings are visible. The determination of the electrical structure has been carried out with a resolution of 2 nm using the contact current mode (CCM) showing similar structures. The thermal images exhibit a high thermal conductivity mostly on the diamond …

Time-Resolved Cryofixation Methods For The Study Of Dynamic Cellular Events By Electron Microscopy: A Review, Keith P. Ryan, Gerd Knoll

Scanning Microscopy

The preservation of cells for electron microscopy by chemical fixation is a lengthy process, requiring up to 30 minutes for cytoplasmic stabilisation. This time lag enables many changes to occur in specimens so that they may not reflect their living state when they are observed in electron microscopes. Many artefacts can be avoided by using cryofixation, which freezes specimens over a period that is measured in milliseconds, so that specimens are preserved by cryoimmobilisation. This time resolution can be used to study rapid processes in biology and chemistry because, although electron microscopes cannot observe dynamic cellular events directly, processes can …

Relationship Between Ftsz Gene Expression And Chromosome Replication In Escherichia Coli, Ping Zhou, Charles E. Helmstetter

Biomedical Engineering and Sciences Faculty Publications

Transcriptional levels within the ftsQAZ region of the Escherichia coli chromosome were correlated with chromosome replication and the division cycle. The transcripts were measured either in synchronous cultures generated by the baby machine technique or in dnaC2(Ts) mutants that had been aligned for initiation of chromosome replication by temperature shifts. Transcription within the ftsZ reading frame was found to fluctuate during the cell cycle, with maximal levels about midcycle and a minimum level at division, in cells growing with a doubling time of 24 min at 37°C. Examination of transcription in dnaC(Ts) mutants aligned for chromosome replication indicated that the …

Epicuticular Wax Load Of Near-Isogenic Barley Lines Differing In Glaucousness, A. Febrero, J. L. Araus

Scanning Microscopy

Scanning electron microscopy observations of epicuticular waxes on flag leaves (blades and sheaths) and ears were carried out on a pair of near-isogenic lines of two-row barley (Hordeum vulgare L. ), derived from cv. Troubadour, differing in their degree of glaucousness (wax bloom). Plants were grown under irrigated and rainfed mediterranean conditions. Wax bloom in flag leaves consisted mainly of thin wax deposits over the blade, and tubes over the sheath. Wax bloom in the blade was denser and more uniformly arranged on the adaxial than on the abaxial side. In the ears, tubular waxes predominated, forming dense patches …

Microvascular Corrosion Casting Of The Rat Mandibular Joint: A Technical Approach, Etienne Piette, Alois Lametschwandtner

Scanning Microscopy

The rat mandibular joint is a ginglymoarthrodial joint deeply hidden under the zygomatic process of the squamosal bone. This joint was studied by scanning electron microscopy (SEM) of microvascular corrosion casts in 47 adult rats. Six additional rats were injected with India ink and thick sections of the joint area were examined by light microscopy. The small size of the joint (2.5 mm x 1.5 mm in occlusion), the existence of two slit-like joint compartments, the close proximity of bones and soft tissues in a mobile structure, and the intimate relationships of the joint with adjacent skeletal muscles made the …

Detection Of Topographic Contrast In The Scanning Electron Microscope At Low And Medium Resolution By Different Detectors And Detector Systems, J. Hejna

Scanning Microscopy

Origins of topographic contrast in the scanning electron microscope (SEM) are different at different resolution levels. At low resolution, tilt contrast of large features dominates; at medium resolution, diffusion contrast of features smaller than an interaction volume of primary electrons dominates.

The secondary electron (SE) signal, commonly used in the SEM, does not give a good tilt contrast; better contrast can be obtained with backscattered electron (BSE) signal of a converter and a sector-shaped ring detector. For obtaining topographic images from signals containing topographic and material contrast, signals of detector systems containing two or more detectors are mixed. Detector systems …

Electron Microprobe Analysis Of Electrolytes In Whole Cultured Epithelial Cells, S. Borgmann, M. Granitzer, J. Crabbé, F. X. Beck, W. Nagel, A. Dörge

Scanning Microscopy

Microprobe analysis was used to determine electrolyte contents in whole epithelial sheets of A6 cells and to investigate the most critical points of this method. Analysis of dextran standard sections of different thickness revealed that low accelerating voltages of about 10 kV are best suited for whole freeze-dried cells on thick supports, since 5 μm thick sections are not penetrated by 10 kV electrons. Washing of A6 cells for 10 sec with distilled water led to cell swelling of about 40%, but the molar concentration ratios and the concentrations per dry weight (dw) were not altered. Washing for 60 sec …

Ultrastructural Features Of Apoptosis, Elisabetta Falcieri, Pietro Gobbi, Loris Zamai, Marco Vitale

Scanning Microscopy

Apoptosis is a gene-directed physiological and programmed process of cell deletion aimed at the regulation of tissue and organ development. It affects different cell types and is triggered by a variety of stimuli all inducing closely comparable structural changes. Despite the deeply different morphology and metabolism of the cell models and the various inducers and their initial effects, a convergence seems to take place in a common metabolic pathway that, in most cases, involves the activation of a Ca²⁺ dependent endonuclease. A growing body of data is now available on the molecular events that lead to DNA damage. DNA …

Radiation Induced Membrane Changes And Programmed Cell Death: Possible Interrelationships, F. Ojeda, H. A. Diehl, H. Folch

Scanning Microscopy

A short review of the evidence that lymphocyte membranes are a target for the initiation of irradiation induced programmed cell death (PCD) is given. It is assumed that for lymphocytes PCD represents an essential physiological mechanism in order to prevent degeneration of the biological system involved. Initiation of PCD can be obtained by a pharmacological activation as well as with irradiation. In both cases, protein kinase-C (PKC) is involved in the signal transduction from the cellular membrane to the nucleus where, by means of a metabolically active process, DNA fragmentation is induced. It is hypothesized that processes connected to lipid …

Stereometry Of Crystalline Phases Observed In Scanning Electron Microscopy, M. A. Martínez, J. M. Gómez De Salazar, A. J. Criado

Scanning Microscopy

A study of edges and angles of known samples has been performed by means of stereoscopic pairs with electron microscopy in two and three dimensional systems. The derived equations have been included in a computer program. Measurements on stereoscopic pairs with different tilt angles using several crystals of galena, calcite and other objects with known dimensions have been performed. The optimum tilt angles have been obtained by comparison with the actual values, and a logarithmic ratio between these angles and the stereoscopic pairs magnification has been found. The errors obtained using this system of calculation are lower than 6% in …

Scanning Electron Microscopy And Energy-Dispersive X-Ray Microanalysis Studies Of Several Human Calculi Containing Calcium Phosphate Crystals, Tetsuo Kodaka, Kazuhiro Debari, Tsuneyoshi Sano, Masayuki Yamada

Scanning Microscopy

Human calcium phosphate calculi: two sialoliths, a urolith, a rhinolith, and a tonsillolith were investigated by scanning electron microscopy (SEM) and energy-dispersive X-ray analysis (EDX). The sialoliths and urolith had appositional shells with thick cortices, respectively, around several nuclei composed of calcospherulites and a rubber-film fragment. The rhinolith had a thin cortex with appositional laminations around a glomerulus-like mass of calcified cotton-like strings. The tonsillolith had a rough cortex with appositional laminations. Its porous interior was composed of numerous calcified conglomerates with microorganisms and calcified masses with fine appositional laminations around the conglomerates. The major crystals were identified as biological …