Open Access. Powered by Scholars. Published by Universities.®

Digital Commons Network™

Open Access. Powered by Scholars. Published by Universities.®

Biology

Institution
Keyword
Publication Year
Publication
Publication Type
File Type

Articles 691 - 720 of 20604

Full-Text Articles in Entire DC Network

Proteomic Profiling Of Escherichia Coli Cytoplasmic Proteins Under Sublethal Boric Acid Stress, Beki̇r Çöl, Begüm Hazar Çi̇ftçi̇, Merve Sezer Kürkçü, Esra Di̇bek Jun 2025

Proteomic Profiling Of Escherichia Coli Cytoplasmic Proteins Under Sublethal Boric Acid Stress, Beki̇r Çöl, Begüm Hazar Çi̇ftçi̇, Merve Sezer Kürkçü, Esra Di̇bek

Turkish Journal of Biology

Background/aim: Boron is an essential micronutrient for plants and certain bacteria, where it plays critical roles in cellular processes at low concentrations. However, elevated levels of boron-containing compounds, such as boric acid, exhibit antimicrobial toxicity. Although the physiological effects of boric acid on bacteria have been partially characterized, its proteome-wide impacts remain poorly elucidated. This study employs a 2D-PAGE-based proteomic approach to investigate how sublethal boric acid stress alters the cytoplasmic proteome of Escherichia coli BW25113. Materials and methods: E. coli BW25113 cultures were grown to mid-log phase in tryptic soy broth (TSB) and exposed to 70 mM boric acid …


Fda-Approved Drugs As Potential Covalent Inhibitors Of Key Sars-Cov-2 Proteins: An In Silico Approach, Murat Seri̇lmez, Anwar Abuelrub, İsmai̇l Erol, Serdar Durdaği Jun 2025

Fda-Approved Drugs As Potential Covalent Inhibitors Of Key Sars-Cov-2 Proteins: An In Silico Approach, Murat Seri̇lmez, Anwar Abuelrub, İsmai̇l Erol, Serdar Durdaği

Turkish Journal of Biology

Background/aim: The COVID-19 pandemic caused by SARS-CoV-2 necessitated rapid development of effective therapeutics, prompting this study to identify potential inhibitors targeting key viral and host proteins: RNA-dependent RNA polymerase (RdRp), main protease (Mpro), transmembrane serine protease 2 (TMPRSS2), and angiotensin-converting enzyme 2 (ACE2). Methods: We used covalent docking and molecular dynamics (MD) simulations to screen FDA-approved compounds against these targets using diverse covalent reaction mechanisms. Top-ranking compounds underwent further evaluation through MD simulations to assess binding stability and conformational dynamics. Results: Several promising drug repurposing candidates were identified: bremelanotide, lanreotide, histrelin, and leuprolide as potential RdRp inhibitors; azlocillin, cefiderocol, and …


Antiinflammatory Effects Of Cucurbitacins And Sorafenib In Hepg2 Cells By Modulating The Iκb/Nf-Κb/Cox-2 Pathway Through Akt Signaling, Muhammed Mehdi̇ Üremi̇ş, Yusuf Türköz, Nuray Üremi̇ş Jun 2025

Antiinflammatory Effects Of Cucurbitacins And Sorafenib In Hepg2 Cells By Modulating The Iκb/Nf-Κb/Cox-2 Pathway Through Akt Signaling, Muhammed Mehdi̇ Üremi̇ş, Yusuf Türköz, Nuray Üremi̇ş

Turkish Journal of Biology

Aim: Cucurbitacins possess antitumor, antiproliferative, and antiinflammatory properties. This study aims to examine the antiinflammatory effects of CuD, CuI, and CuE on NF-κB, iNOS, COX-2, and Akt and compare their cytotoxic and antiinflammatory effects on HepG2 cells with sorafenib, the primary chemotherapeutic agent used in HCC treatment. Methods: Cytotoxic effects of cucurbitacins and sorafenib on HepG2 cells were evaluated using MTT and LDH assays, along with Annexin V, MMP, and comet assays. Levels of proteins related to the Akt/NF-κB pathway and COX-2, iNOS, and NO were also measured. Results: Our study showed that CuD, CuI, CuE, and sorafenib have antiproliferative …


Enhancement Of Phenolic, Flavonoid, And Biological Activi-Ties In Fermented Pea (Pisum Sativum) Extracts Via Frac-Tionation, Anastasia Fitria Devi, Euis Filailla, Setyani Budiari, Hani Mulyani, Nina Artanti Jun 2025

Enhancement Of Phenolic, Flavonoid, And Biological Activi-Ties In Fermented Pea (Pisum Sativum) Extracts Via Frac-Tionation, Anastasia Fitria Devi, Euis Filailla, Setyani Budiari, Hani Mulyani, Nina Artanti

Karbala International Journal of Modern Science

In this study, peas were fermented for 24 h using either Rhizopus oligosporus or Aspergillus oryzae. The resulting fermented peas, along with unfermented peas, were extracted using either methanol or water. The methanol extracts showed greater improvements following fermentation compared to the water extracts, as shown by the IC50 values, which progressed from >500 to ≤200 µg/mL, as determined via the 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) method. Consequently, further fractionations focused on the methanol extracts of the fermented peas. Six bands were resolved on thin-layer chromatography plates for each extract. Their positions demonstrated significant effects (p < 0.05) on bioactivity. The bottom band (i.e., Band 1) exhibited approximately 70% inhibition, as determined via the 2,2-diphenyl-1-picrylhydrazyl (DPPH) method and 35% inhibition according to the ABTS method, while the other bands displayed lower to negligible inhibition. Band 5 displayed 85–97% cytotoxicity, while Band 1 did not show any cytotoxicity. The total phenolic content (TPC) of Band 1 and the total flavonoid content (TFC) of Band 6 increased 4.4- and 8.9-fold, respectively, compared to those of the unfractionated extracts. Furthermore, a correlation analysis revealed a strong correlation between TFC and the three observed bioactivities. The different cultures significantly (p < 0.05) affected the antioxidant activity of either the fermented pea extracts or the resulting bands, as determined via the DPPH method. These results indicated that fermentation enhanced the antioxidant activity of peas. Subsequent fractionations separated and concentrated compounds from the fermented peas, improving the bioactivities, TPC, and TFC of the resulting fractions.


Synthesis Of Gold Nanoparticles Using Hordeum Vulgare Leaf Extract And Their Antibacterial Activity, Mohamed M. Sehree, Shakir Ghazi Gergees, Pakhshan A. Hassan Jun 2025

Synthesis Of Gold Nanoparticles Using Hordeum Vulgare Leaf Extract And Their Antibacterial Activity, Mohamed M. Sehree, Shakir Ghazi Gergees, Pakhshan A. Hassan

Karbala International Journal of Modern Science

Plant extracts and gold nanoparticles are promising alternatives for combating antibiotic resistance in light of the increasing bacterial resistance. Leaf extract of barley was used to synthesize gold nanoparticles (AuNPs). Barley gold nanoparticles (BL-AuNPs) were produced by adjusting some reaction parameters. These BL-AuNPs were characterized through employing the UV-visible spectroscopy technique, the scanning electron microscope (SEM), Fourier transform infrared spectroscopy (FTIR), and energy dispersive X-ray spectroscopy (EDX). BL-AuNPs were tested for antibacterial efficacy against two strains of Gram-negative bacteria, clinically isolated and considered as multidrug-resistant pathogens, Acinetobacter baumannii and Salmonella typhi. The antimicrobial efficiency of the compounds was evaluated …


The Impact Of Microplastics On Water Quality, Heavy Metals, And Health Risks In Bioflocbased Tilapia Farming Systems, Dian Rizky Afriani, Deswati Deswati, Rahmiana Zein, Putri Ramadhani Jun 2025

The Impact Of Microplastics On Water Quality, Heavy Metals, And Health Risks In Bioflocbased Tilapia Farming Systems, Dian Rizky Afriani, Deswati Deswati, Rahmiana Zein, Putri Ramadhani

Karbala International Journal of Modern Science

Along with microplastics, pollution of heavy metals, including iron (Fe), zinc (Zn), and copper (Cu), in freshwater ecosystems poses a serious environmental threat that can adversely affect human health. This study investigates the use of biofloc technology to reduce microplastic and heavy metal contamination while improving water quality. By utilizing microbial aggregates that capture microplastic and heavy metal particles through flocculation and biosorption processes, four experimental treatments were applied, i.e.: A (without biofloc and microplastics); B (with biofloc, without microplastics); C (with biofloc and low-density polyethylene microplastics); and D (with biofloc and high-density polyethylene microplastics). The results indicate that fish …


Modulation Of Pulmonary Epithelial Paracellular Permeability By Pneumolysin From Streptococcus Pneumoniae, Alexandra S. Tamayo Moreira Jun 2025

Modulation Of Pulmonary Epithelial Paracellular Permeability By Pneumolysin From Streptococcus Pneumoniae, Alexandra S. Tamayo Moreira

Biology Theses

Pneumolysin (PLY), a key virulence factor of Streptococcus pneumoniae (S. pneumoniae), disrupts airway epithelial barriers, yet its cellular and molecular mechanisms remain poorly understood. We aim to elucidate recombinant pneumolysin (rPLY)’s effects on Calu-3 bronchial epithelial barrier integrity and underlying pathways. This study investigates the effects of non-lytic and lytic PLY concentrations (5, 15, 30 µg/mL) to test the hypothesis that PLY increases epithelial paracellular permeability by affecting the anatomy and physiology of epithelial tight junctions. To address the hypothesis that PLY increases paracellular permeability through disruption of tight junction integrity in Calu-3 cells in a time- and dose-dependent …


The Enigmatic Samuel Aughey: Nebraska’S Pastor Naturalist, Hugh H. Genoways, Margaret R. Bolick, Mary Anne Andrei Jun 2025

The Enigmatic Samuel Aughey: Nebraska’S Pastor Naturalist, Hugh H. Genoways, Margaret R. Bolick, Mary Anne Andrei

Zea E-Books Collection

Samuel Aughey at age 39 became the first Professor of Natural Science at the new University of Nebraska in Lincoln, serving from 1871 to 1883. He was an ordained pastor of the Evangelical Lutheran Church, with an addendum degree from Pennsylvania College (now Gettysburg College) in 1856 and an A.M. degree two years later. His early pastoral work was in Pennsylvania, but in 1864 he became a home missionary to a church in Dakota City, Nebraska. Aughey’s career at the university was marked with successes and honors, but also criticism and questions about his basic knowledge of the sciences. While …


Using Stomach Content Analysis To Determine The Trophic Ecology Of Omosudis Lowii, A Deep-Sea Predator In The Gulf Of Mexico, Claire De Noyo Jun 2025

Using Stomach Content Analysis To Determine The Trophic Ecology Of Omosudis Lowii, A Deep-Sea Predator In The Gulf Of Mexico, Claire De Noyo

USF Tampa Graduate Theses and Dissertations

Little is known about the feeding dynamics of deep-sea communities, despite their significant ecological importance. Deep-pelagic communities contribute to marine biodiversity and ecosystem stability while directly offsetting climate change via carbon sequestration. Omosudis lowii is an understudied, deep-sea fish found in temperate and tropical waters worldwide, including the Gulf of Mexico. Omosudis lowii have large jaws and distensible stomachs, allowing them to capture prey items larger than their body size. The present seminal study used stomach content analysis to quantitatively describe the O. lowii trophic ecology, providing baseline data regarding diet composition, feeding selectivity, and factors that impact prey selection. …


Branching Corals Modulate Their Hydrodynamic Environment, Enhancing Capture Rates Of Evasive Prey, Kelsey Daniels Jun 2025

Branching Corals Modulate Their Hydrodynamic Environment, Enhancing Capture Rates Of Evasive Prey, Kelsey Daniels

USF Tampa Graduate Theses and Dissertations

Reef-building corals obtain nutrients through two primary means: autotrophy (via mutualism with photosynthetic zooxanthellae) and heterotrophy (via feeding). The latter form of resource acquisition is understudied and many aspects of predator-prey interactions between coral and naturally occurring prey species remain unexplored. In this thesis, I elucidate the role of branching coral morphology in shaping the colony’s local hydrodynamic environment and describe how this environment impacts prey capture, particularly among evasive and hydrodynamically sensitive, but highly abundant prey such as copepods. I used acrylic cylinders of three sizes in aquaria to model the structure of coral branches across the range of …


Science Communication Through Cool Critters: An Informal Learning Experience For Youth, Jamila L. Bajelan, Mary J. Harner Jun 2025

Science Communication Through Cool Critters: An Informal Learning Experience For Youth, Jamila L. Bajelan, Mary J. Harner

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

There are numerous ways to communicate science and assess the effectiveness of that communication. One approach focuses on increasing awareness, enjoyment, interest, opinion, and/or understanding of science. For this study, we created an informal learning experience for youth to communicate the science of animals in Nebraska. We developed Cool Critters, a weeklong summer camp for elementary school-aged students, to increase participants' enjoyment, interest, and opinion of Nebraska animals. In 2023, Cool Critters was led in three educational settings in central Nebraska and reached sixty-six participants. Surveys were used to determine the camp's success in effective science communication and whether …


Exploiting Genomics To Advance Genetic Gain For Reproductive Traits In Sheep, Mujibur Rahman Jun 2025

Exploiting Genomics To Advance Genetic Gain For Reproductive Traits In Sheep, Mujibur Rahman

ORBioM (Open Research BioSciences Meeting)

Poor reproductive performance has a negative impact on the profitability of sheep production systems with the number of lambs reared highlighted as a key driver of farm profitability. Nevertheless, the genetic improvement of reproductive traits in sheep has been constrained by their low heritability and pleiotropic nature. Understanding the underlying genetic architecture can improve genomic prediction estimates and enhance genetic gain.

This study will utilize large-scale genomic and phenotypic datasets to enhance genetic gain in sheep reproductive traits through four approaches: 1) to determine the effect of inbreeding depression on reproduction, 2) to identify causal variants impacting reproductive performance through …


Dna-Damaging Chemotherapy Reshapes The Immune Landscape Of The Heart, Ruijun He Jun 2025

Dna-Damaging Chemotherapy Reshapes The Immune Landscape Of The Heart, Ruijun He

Arts & Sciences Graduate Student Theses and Dissertations

Heart failure and ischemic heart disease represent the most common causes of death among cancer survivors. With the tremendous progress in last few decades that empowered early cancer diagnosis and treatment, the population of cancer survivors has been rapidly growing and by 2040, the number is projected to be 26 million. However, despite extensive studies on chemotherapies, there exists a limited understanding of how exposure to chemotherapy reagents impacts heart function in the long term. Moreover, while the roles of immune landscape in heart diseases have recently been revealed, how chemotherapy reagents influence the cardiac immune cells is poorly understood. …


The Factors Affecting The Distribution Of Scorpions (Arachnida: Scorpions) In Iran, Hassan Nasirian Jun 2025

The Factors Affecting The Distribution Of Scorpions (Arachnida: Scorpions) In Iran, Hassan Nasirian

Chulalongkorn Medical Journal

Background: The distribution of scorpions is influenced by various factors that determine their presence and abundance in different regions. Understanding these factors is crucial for comprehending scorpion ecology and predicting their potential impact on ecosystems. Objective: These subtopics aim to provide an overview of the distribution of scorpions within Iran and the factors affecting their distribution, highlighting their ecological preferences and adaptations to different regions.

Methods: Forty-nine documents were collected from well-known indexing services, including Elsevier, Google Scholar, PubMed, ScienceDirect, Scopus, Springer, and Web of Science. After carefully studying the documents, they were classified into specific topics and discussed.

Results: …


Evolutionary Conservation Of Wiskott-Aldrich Syndrome Protein In Clarthrin-Mediated Endocytosis, Jonah Friedmann Jun 2025

Evolutionary Conservation Of Wiskott-Aldrich Syndrome Protein In Clarthrin-Mediated Endocytosis, Jonah Friedmann

Lawrence University Honors Projects

Clathrin-mediated endocytosis (CME) is a cellular process for internalizing extracellular materials and recycling parts of the plasma membrane into intracellular vesicles. When a threshold of membrane-bound receptors is met at the cell surface, endocytic proteins organize into a conformation that can invaginate the membrane and separate a vesicle into the cytosol. Our current model for understanding CME has been derived from studies in Saccharomyces cerevisiae. Previous research has led to a model for how Las17, a homolog of Wiskott Aldrich Syndrome Protein (WASP), contributes to CME. WASP proteins are critical actin nucleators involved in multiple processes. In S. cerevisiae, Las17 …


The Impact Of Temperature Induced Vertebral Anomalies On C-Start Swimming Performance In Astyanax Mexicanus (Teleostei: Characidae), Kaleigh Arnold Jun 2025

The Impact Of Temperature Induced Vertebral Anomalies On C-Start Swimming Performance In Astyanax Mexicanus (Teleostei: Characidae), Kaleigh Arnold

College of Science and Health Theses and Dissertations

This study investigates the impact that temperature-induced vertebral anomalies have on the C-start escape response of Astyanax mexicanus, a model species in evolutionary developmental biology. Employing three temperature treatments to induce varying degrees of skeletal anomalies, we assessed their effects on key swimming performance metrics including, C-start time, the curvature coefficient, head displacement distance, and displacement velocity. Through the use of linear mixed models (LMMs) and generalized linear mixed models (GLMMs), our results reveal that specific anomalies such as vertebral fusions and anomalous haemal and neural spines affected the curving ability of c-start escape responses, however, these did not negatively …


1 Herpes Simplex Virus Type 1 And Apolipoprotein-E In Alzheimer’S Disease: Virus Entry And Innate Immunity, Jim Camilleri Jun 2025

1 Herpes Simplex Virus Type 1 And Apolipoprotein-E In Alzheimer’S Disease: Virus Entry And Innate Immunity, Jim Camilleri

College of Science and Health Theses and Dissertations

Herpes simplex virus type 1 (HSV-1) is a neurotropic virus that has been detected in brains affected by Alzheimer’s Disease (AD), the leading global cause of cognitive decline. In vitro and epidemiological studies support a role for HSV-1 in AD. The strongest genetic risk factor for late-onset AD is the E4 allele of APOE, which codes for apolipoprotein-E (ApoE), a protein that mediates brain cholesterol homeostasis. Previous work has suggested that ApoE can affect HSV-1 entry into cells; however, APOE has three alleles (E2, E3, and E4) and allelespecific effects of ApoE on HSV-1 entry remain undetermined. We hypothesized that …


Genetic Structuring Of The Ozark Pocket Gopher (Geomys Bursarius Ozarkensis) And Coevolution With Its Geomydoecus Ectoparasites, Monica Raquel Reusche Jun 2025

Genetic Structuring Of The Ozark Pocket Gopher (Geomys Bursarius Ozarkensis) And Coevolution With Its Geomydoecus Ectoparasites, Monica Raquel Reusche

Student Theses and Dissertations

The Ozark pocket gopher Geomys bursarius ozarkensis is a highly isolated and restricted subspecies of the plains pocket gopher endemic to Izard Co., Arkansas. This isolation may have impacts genetically and may have caused speciation of their chewing louse. First, I updated the distribution and confirmed occupation at 46 previously documented and 91 additional sites, a 34% increase in areal range. Next, I evaluated natal dispersal which was rare (9.1%) and occurred over shorter distances (≤ 63 m) than for other gopher species. Analysis of single nucleotide polymorphisms from contemporary populations and museum specimens indicated a high genetic structure among …


Highly Adaptable Dendrimer Gel Nanoparticles With Dual Targeting Of Upar And Ribonucleotide Reductase R2 For Better Retention And Improved Therapeutic Outcomes In Triple-Negative Breast Cancer, Hsin Yin Chuang, Da Huang, Lin Qi, Vidit Singh, Anna Chernatynskaya, Yue-Wern Huang, Hu Yang Jun 2025

Highly Adaptable Dendrimer Gel Nanoparticles With Dual Targeting Of Upar And Ribonucleotide Reductase R2 For Better Retention And Improved Therapeutic Outcomes In Triple-Negative Breast Cancer, Hsin Yin Chuang, Da Huang, Lin Qi, Vidit Singh, Anna Chernatynskaya, Yue-Wern Huang, Hu Yang

Biological Sciences Faculty Research & Creative Works

Triple-negative breast cancer (TNBC) accounts for approximately 15% of breast cancers and lacks estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER2), rendering it unresponsive to hormonal or anti-HER2 therapies. Due to its poor prognosis and limited treatment options, there is an urgent need for targeted therapies. In this study, we developed highly adaptable polyamidoamine (PAMAM) dendrimer-based gel nanoparticles with dual-targeting capabilities against urokinase-type plasminogen activator receptor (uPAR) and ribonucleotide reductase R2 (R2). These nanoparticles were designed to target both TNBC cells and cancer-associated stromal cells by leveraging uPA-uPAR interactions and delivering the antisense oligonucleotide …


Rethinking Large-Scale Phylogenomics With Eukphylo V.1.0, A Flexible Toolkit To Enable Phylogeny-Informed Data Curation And Analyses Of Diverse Eukaryotic Lineages, Laura A. Katz, Marie Leleu, Godwin Ani, Rebecca Gawron, Auden Cote-L'Heureux Jun 2025

Rethinking Large-Scale Phylogenomics With Eukphylo V.1.0, A Flexible Toolkit To Enable Phylogeny-Informed Data Curation And Analyses Of Diverse Eukaryotic Lineages, Laura A. Katz, Marie Leleu, Godwin Ani, Rebecca Gawron, Auden Cote-L'Heureux

Biological Sciences: Faculty Publications

Eukaryotic diversity is largely microbial, with macroscopic lineages (plants, animals, and fungi) nesting among a plethora of diverse protists. Our understanding of the evolutionary relationships among eukaryotes is rapidly advancing through ’omics analyses, but phylogenomic analyses are challenging for microeukaryotes, particularly uncultivable lineages, as single-cell sequencing approaches generate a mixture of sequences from hosts, associated microbiomes, and contaminants. Moreover, many analyses of eukaryotic gene families and phylogenies rely on boutique data sets and methods that are challenging for other research groups to replicate. To address these challenges, we present EukPhylo v.1.0, a modular, user-friendly pipeline that enables effective data curation …


Anthropogenic Litter In Freshwater Ecosystems: Effect On Ecosystem Processes And Spatial Distribution, Emily Johnson Jun 2025

Anthropogenic Litter In Freshwater Ecosystems: Effect On Ecosystem Processes And Spatial Distribution, Emily Johnson

Master's Theses

The rapid increase of plastic production and disposal into the environment has resulted in anthropogenic litter (i.e., trash; AL) becoming a global problem. In aquatic ecosystems, macro- and microplastics are long-lived, mobile, and interact with the physical and chemical components of aquatic ecosystems. Our objectives were to: (1) assess the impact of microplastic pollution on the ecosystem processes of ecosystem metabolism and N2 flux in an oligotrophic lake and (2) to assess the abundance and assemblage of anthropogenic litter in a large urban river. For objective (1), we added microplastics at a range of concentrations to littoral mesocosms. Ecosystem metabolism …


High-Salt Tumor Microenvironment: Not As Bad As It Sounds, Not As Good As It Seems, Umer Ali, Venkataswarup Tiriveedhi Jun 2025

High-Salt Tumor Microenvironment: Not As Bad As It Sounds, Not As Good As It Seems, Umer Ali, Venkataswarup Tiriveedhi

Biology Faculty Research

Recent evidence suggests a high-sodium microenvironment in breast tumors. However, the exact role of this high-sodium microenvironment on tumorigenesis is unknown. Salt (sodium chloride, NaCl) is a well-known inflammatory molecule playing a significant role in various chronic ailments like cardiovascular and autoimmune diseases. Importantly, chronic inflammation is recognized as one of the major hallmarks of carcinogenesis. Breast cancer cell culture-based studies demonstrated that high-salt (HS) treatment (Δ35–50 mM NaCl) induced cancer cell proliferation. However, preclinical murine research showed reduced tumor progression kinetics in mice fed a short-term HS diet (4% NaCl diet, 0–2 weeks prior to the injection of tumor …


Human Gut Commensal Alistipes Timonensis Modulates The Host Lipidome And Delivers Anti-Inflammatory Outer Membrane Vesicles To Suppress Colitis In An Il10-Deficient Mouse Model, Ethan Older, Mary K. Mitchell, Andrew Campbell, Xiaoying Lian, Michael Madden, Yuzhen Wang, Lauren E. Van De Wal, Thelma Zaw, Brandon N. Vanderveen, Rodney Tatum, E. Angela Murphy, Yan-Hua Chen, Daping Fang, Melissa Ellermann, Jie Li Jun 2025

Human Gut Commensal Alistipes Timonensis Modulates The Host Lipidome And Delivers Anti-Inflammatory Outer Membrane Vesicles To Suppress Colitis In An Il10-Deficient Mouse Model, Ethan Older, Mary K. Mitchell, Andrew Campbell, Xiaoying Lian, Michael Madden, Yuzhen Wang, Lauren E. Van De Wal, Thelma Zaw, Brandon N. Vanderveen, Rodney Tatum, E. Angela Murphy, Yan-Hua Chen, Daping Fang, Melissa Ellermann, Jie Li

Faculty Publications

Correlative studies have linked human gut microbes to specific health conditions. Alistipes is one such microbial genus negatively linked to inflammatory bowel disease (IBD). However, the protective role of Alistipes in IBD is understudied, and the underlying molecular mechanisms remain unknown. In this study, colonization of Il10-deficient mice with Alistipes timonensis DSM 27924 delays colitis development. Colonization does not significantly alter the gut microbiome composition, but instead shifts the host plasma lipidome, increasing phosphatidic acids while decreasing triglycerides. Outer membrane vesicles (OMVs) derived from Alistipes are detected in the plasma of colonized mice, carrying potentially immunomodulatory metabolites into the …


Insights Into The Floral Senescence Effects Of Nanoparticles, Vuk Uskoković Jun 2025

Insights Into The Floral Senescence Effects Of Nanoparticles, Vuk Uskoković

Administration and Staff Articles and Research

Flowers could be valuable addenda to nanomedicine labs as in vivo models crossing the gap between the cell culture and small mammals. However, as it is shown here, floral models continue to be predominantly utilized within resource-limited research environments and remain largely underrepresented in mainstream biomedical investigations conducted by well-funded institutions in the developed world. The ability to delay the senescence of Orange Jubilee wildflowers was tested here on three types of nanoparticles: selenite-doped hydroxyapatite (HAp), citrate-stabilized HAp, and superparamagnetic iron oxide. Integration of selenite into the HAp crystal lattice produced a mild increase in the senescence rate …


The Bone Is Not Alone: Skeletal Muscle Is A Novel Source Of Fibroblast Growth Factor 23, Kylie Heitman Jun 2025

The Bone Is Not Alone: Skeletal Muscle Is A Novel Source Of Fibroblast Growth Factor 23, Kylie Heitman

All ETDs from UAB

Chronic kidney disease (CKD) is a major public health issue often accompanied by various pathologies. Hyperphosphatemia contributes to a range of complications, including vascular calcification, systemic inflammation, anemia, left ventricular hypertrophy, and skeletal muscle atrophy. Phosphate homeostasis is tightly regulated through a combination of renal excretion and its storage in bones, with fibroblast growth factor (FGF) 23 playing a central role in this regulation. Produced primarily by osteocytes in response to elevated serum phosphate, FGF23 helps maintain phosphate balance by promoting renal phosphate excretion and inhibiting the synthesis of vitamin D and parathyroid hormone. Dysregulation of FGF23 is associated both …


Patterns Of Late Holocene And Historical Extinctions On Madagascar, Laurie R. Godfrey, Zachary S. Klukkert, Brooke E. Crowley, Robin R. Dawson, Peterson Faina, Benjamin Z. Freed, Evon Hekkala, Cortni Borgerson, Harimanjaka A. M. Rasolonjatovo, Patricia C. Wright, Stephen J. Burns Jun 2025

Patterns Of Late Holocene And Historical Extinctions On Madagascar, Laurie R. Godfrey, Zachary S. Klukkert, Brooke E. Crowley, Robin R. Dawson, Peterson Faina, Benjamin Z. Freed, Evon Hekkala, Cortni Borgerson, Harimanjaka A. M. Rasolonjatovo, Patricia C. Wright, Stephen J. Burns

EKU Faculty and Staff Scholarship

Around 1000 years ago, Madagascar experienced the collapse of populations of large vertebrates that ultimately resulted in many species going extinct. The factors that led to this collapse appear to have differed regionally, but in some ways, key processes were similar across the island. This review evaluates four hypotheses that have been proposed to explain the loss of large vertebrates on Madagascar: Overkill, aridification, synergy, and subsistence shift. We explore regional differences in the paths to extinction and the significance of a prolonged extinction window across the island. The data suggest that people who arrived early and depended on hunting, …


Isolating Novel Enzymes And Microorganisms For Use In Food Waste Fermentation, Shannon Marie Jeffries Jun 2025

Isolating Novel Enzymes And Microorganisms For Use In Food Waste Fermentation, Shannon Marie Jeffries

Tennessee State University Alumni Theses and Dissertations

In the United States, upwards of 2 billion pounds of food waste are discarded yearly, an amount equivalent to $161 billion or 30-40% of all food production, making up the largest portion of landfill waste (Buzby, 2022). A small amount of food scraps are recycled through compost and re-purposed into animal feed, but these processes are costly, have minimal benefits, and have limitations (EPA, 2024). One of the most promising routes is converting food waste into value added products through microbial fermentation. Food waste is rich in carbohydrates, proteins, lipids, vitamins, and other trace minerals, making it the ideal environment …


Exploring Soft Polymeric Nanoparticles For Targeted Biomolecule Delivery In Plant Cells, Mohammad Rashid Jun 2025

Exploring Soft Polymeric Nanoparticles For Targeted Biomolecule Delivery In Plant Cells, Mohammad Rashid

Theses and Dissertations

Safe and efficient agricultural practices require innovative technologies. Nanotechnology offers promising solutions for advancing plant agriculture by enabling the targeted delivery of biomolecules such as agrochemicals and nucleic acids. This study focuses on developing a safe nanotechnological approach for delivering molecules of interest into plant cells. We investigated the ability of four types of polymeric nanoparticles such as Polyethylene glycol N, Nʹ-dibutylethylenediamine (PEG-DB), Polyethylene glycol 2-pyrrolidin-1-yl-ethyl-amine (PEG-PY), Polyethyleneimine (PEI), Arabinoxylan (AX)+, and Zein+ to form conjugates with plasmid DNA (pDNA). Our findings confirm that plant-derived cationic nanopolymers, AX+ and Zein+, effectively bind negatively charged pDNA (pGFPGUSPlus) carrying a GFP reporter …


The Mayfly Newsletter, Donna Giberson Jun 2025

The Mayfly Newsletter, Donna Giberson

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.


Parvalbumin Interneuron-Oligodendrocyte Interactions In The Infralimbic Cortex Promote Extracellular Plasticity Mechanisms After Safety Learning, Lucy Emma Denholtz Jun 2025

Parvalbumin Interneuron-Oligodendrocyte Interactions In The Infralimbic Cortex Promote Extracellular Plasticity Mechanisms After Safety Learning, Lucy Emma Denholtz

Dissertations, Theses, and Capstone Projects

The ability to differentiate between threat and safety cues is essential for adaptive behavior, yet this process is disrupted in psychiatric disorders, such as post-traumatic stress disorder (PTSD), where safety cues fail to downregulate fear expression. To better understand the neurobiological mechanisms of safety learning, I investigate how safety conditioning vs contextual fear conditioning modify behavioral and cellular mechanisms in the infralimbic (IL) region of the medial prefrontal cortex (mPFC) at several time points after learning. Through this work, I identify a novel mechanism whereby safety learning promotes learning dependent neuro-glial interactions that promote conditions for plasticity in the mPFC. …