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Purification And Characterization Of A Leishmania Mitogen Activated Protein Kinase : A Potentially New Anti-Parasitic Drug Target, Sailaja Sankabathula

Theses, Dissertations and Culminating Projects

Synthetic inhibitors of the human mitogen activated protein kinase, p38 MAPK may represent a new class of anti-parasitic agents. p38 MAPK inhibitors have been shown to inhibit replication of Toxoplasma gondii (T.gondii), the causative agent of taxoplasmosis, in vitro and in vivo. Inhibition of parasite replication was due to the inhibition of a T.gondii p38 MAPK homolog called tgmapk-1. Other parasites have MAPKs homologous to tgmapk-1 and these MAPKs may represent novel drug targets for new therapeutics in treating parasitic diseases. We have focused on a MAPK from, Leishmania mexicana (L.mexicana), the causative agent for one form of leishmaniasis. The …

The Impact And Shortfall Of Conservation On The Status Of The World's Vertebrates , M Hoffmann, C Hilton-Taylor, A Angulo, Monica Bohm Phd, Shm Bbutchart, K E. Carpenter, J Chanson, B Collen, N A. Cox, Neil Cumberlidge

Journal Articles

No abstract provided.

From Energy Gradient And Natural Selection To Biodiversity And Stability Of Ecosystems, Bo Deng

Department of Mathematics: Faculty Publications

The purpose of this paper is to incorporate well-established ecological principles into a foodweb model consisting of four trophic levels --- abiotic resources, plants, herbivores, and carnivores. The underlining principles include Kimura's neutral theory of genetic evolution, Liebig's Law of the Minimum for plant growth, Holling's functionals for herbivore foraging and carnivore predation, the One-Life Rule for all organisms, and Lotka-Volterra's model for intraand interspecific competitions. Numerical simulations of the model led to the following statistical findings: (a) particular foodwebs can give contradicting observations on biodiversity and productivity, in particular, all known functional forms -- - positive, negative, sigmoidal, and …

Loss Of The Sin3 Transcriptional Corepressor Results In Aberrant Mitochondrial Function, Valerie L. Barnes, Bethany S. Strunk, Icksoo Lee, Maik Hüttemann, Lori A. Pile

Wayne State University Associated BioMed Central Scholarship

Abstract

Background

SIN3 is a transcriptional repressor protein known to regulate many genes, including a number of those that encode mitochondrial components.

Results

By monitoring RNA levels, we find that loss of SIN3 inDrosophilacultured cells results in up-regulation of not only nuclear encoded mitochondrial genes, but also those encoded by the mitochondrial genome. The up-regulation of gene expression is accompanied by a perturbation in ATP levels in SIN3-deficient cells, suggesting that the changes in mitochondrial gene expression result in altered mitochondrial activity. In support of the hypothesis that SIN3 is necessary for normal mitochondrial function, yeastsin3null mutants exhibit very poor …

How Our Health Depends On Biodiversity, Eric Chivian M.D., Aaron Bernstein M.D., M.P.H.

Ecosystem Disruption & Climate Change

The eminent Harvard biology Professor Edward O.Wilson once said about ants, “We need them to survive, but they don’t need us at all.” The same, in fact, could be said about countless other insects, bacteria, fungi, plankton, plants, and other organisms. This fundamental truth, however, is largely lost to many of us. Rather, we humans often act as if we are totally independent of Nature, as if our driving thousands of other species to extinction and disrupting the life-giving services they provide will have no effect on us whatsoever.

This summary, using concrete examples from our award-winning Oxford University Press …

Cellular And Molecular Dissection Of Pluripotent Adult Somatic Stem Cells In Planarians, Norito Shibata, Labib Rouhana, Kiyokazu Agata

Biological Sciences Faculty Publications

Freshwater planarians, Plathelminthes, have been an intriguing model animal of regeneration studies for more than 100 years. Their robust regenerative ability is one of asexual reproductive capacity, in which complete animals develop from tiny body fragments within a week. Pluripotent adult somatic stem cells, called neoblasts, assure this regenerative ability. Neoblasts give rise to not only all types of somatic cells, but also germline cells. During the last decade, several experimental techniques for the analysis of planarian neoblasts at the molecular level, such as in situ hybridization, RNAi and fluorescence activated cell sorting, have been established. Moreover, information about genes …

Diel Fish Habitat Selection In A Tributary Stream, Andria K. Salas, Eric B. Snyder

Peer Reviewed Publications

This study investigated the location and diel habitat preferences (at 100 m reach scale) of fish in a small tributary stream in late spring, early summer. During the day, coho (Oncorhynchus kisutch) preferred areas with more cover (deeper, greater extent of undercut banks) vs. night when LWD was preferred (Pearson correlation and step-wise MLR). Chinook (O. tshawytscha) exhibited an opposite pattern, preferring LWD during the day vs. higher velocity at night. This suggests these two potadromous species may be partitioning resources. Pooling coho, chinook and rainbow trout (O. mykiss) indicated reaches with more LWD …

Building A Mechanistic Understanding Of Predation With Gps-Based Movement Data, Evelyn Merrill, Ha˚Kan Sand, Barbara Zimmermann, Heather Mcphee, Nathan Webb, Mark Hebblewhite, Peter Wabakken, Jacqueline L. Frair

Biological Sciences Faculty Publications

Quantifying kill rates and sources of variation in kill rates remains an important challenge in linking predators to their prey. We address current approaches to using global positioning system (GPS)-based movement data for quantifying key predation components of large carnivores. We review approaches to identify kill sites from GPS movement data as a means to estimate kill rates and address advantages of using GPS-based data over past approaches. Despite considerable progress, modelling the probability that a cluster of GPS points is a kill site is no substitute for field visits, but can guide our field efforts. Once kill sites are …

Species Composition And Spatiotemporal Pattern Of The Seed Bank And Vegetation In Native And Degraded Florida Rosemary Scrub, Jennifer J. Navarra

Electronic Theses and Dissertations

The soil seed bank plays a dynamic role in the regeneration of plant communities after natural and anthropogenic disturbance. In this thesis, I addressed how disturbances influence the vegetation and seed bank of Florida rosemary scrub. In Chapter One I evaluated changes in species composition and spatiotemporal pattern of the vegetation and seed bank along a gradient of disturbance. During the summers and winters of 2007-2009 percent ground cover and seed bank species composition were assessed among replicates of three vegetation types subjected to minimal, moderate, and extreme anthropogenic disturbance (native rosemary scrub, degraded scrub, and agriculturally improved pasture, respectively). …

Characterizing The Vertical Structure And Structural Diversity Of Florida Oak Scrub Vegetation Using Discrete-Return Lidar, James J. Angelo

Electronic Theses and Dissertations

Vertical structure, the top-to-bottom arrangement of aboveground vegetation, is an important component of forest and shrubland ecosystems. For many decades, ecologists have used foliage height profiles and other measures of vertical structure to identify discrete stages in post-disturbance succession and to quantify the heterogeneity of vegetation. Such studies have, however, required resource-intensive field surveys and have been limited to relatively small spatial extents (e.g.,

Biogeography And Diversification In The Neotropics: Testing Macroevolutionary Hypotheses Using Molecular Phylogenetic Data, Juan Manuel Daza Rojas

Electronic Theses and Dissertations

Lineage diversification in the Neotropics is an interesting topic in evolutionary biology and one of the least understood. The complexity of the region precludes generalizations regarding the historical and evolutionary processes responsible for the observed high diversity. Here, I use molecular data to infer evolutionary relationships and test hypotheses of current taxonomy, species boundaries, speciation and biogeographic history in several lineages of Neotropical snakes. I comprehensively sampled a widely distributed Neotropical colubrid snake and Middle American pitvipers and combined my data with published sequences. Within the colubrid genus Leptodeira, mitochondrial and nuclear markers revealed a phylogeograhic structure that disagrees with …

Dynamic Genomes Of Eukaryotes And The Maintenance Of Genomic Integrity, Laura Wegener Parfrey, Laura A. Katz

Biological Sciences: Faculty Publications

Many biologists assume that eukaryotic genomes are transmitted stably between generations with only minor variations. Yet, this presumed constancy is at odds with data indicating that eukaryotic genomes are dynamic, varying extensively in content among many different lineages. Thus, rather than being constant, genomes vary considerably within individuals during their lifetimes.

Gender Dimorphism In The Exercise-Naïve Murine Skeletal Muscle Proteome, Lauren Ann Metskas, Mohini Kulp, Stylianos P. Scordilis

Biological Sciences: Faculty Publications

Skeletal muscle is a plastic tissue with known gender dimorphism, especially at the metabolic level. A proteomic comparison of male and female murine biceps brachii was undertaken, resolving an average of 600 protein spots of MW 15-150 kDa and pI 5-8. Twenty-six unique full-length proteins spanning 11 KOG groups demonstrated statistically significant (p< 0.05) abundance differences between genders; the majority of these proteins have metabolic functions. Identified glycolytic enzymes demonstrated decreased abundance in females, while abundance differences in identified oxidative phosphorylation enzymes were specific to the proteins rather than to the functional group as a whole. Certain cytoskeletal and stress proteins showed specific expression differences, and all three phosphorylation states of creatine kinase showed significant decreased abundance in females. Expression differences were significant but many were subtle (≤ 2-fold), and known hormonally-regulated proteins were not identified. We conclude that while gender dimorphism is present in non-exercised murine skeletal muscle, the proteome comparison of male and female biceps brachii in exercise-naive mice indicates subtle differences rather than a large or obviously hormonal dimorphism.

Trapping Mammals In A Cautious World: The Effect Of Disinfectants On Trap Success, James Wilson, K. E. Mabry

Biology Faculty Publications

Disinfecting traps that have captured small mammals is one recommendation for preventing occurrence of hantavirus infection; however, the potential effects of disinfection on small mammal trappability have not been investigated thoroughly. We conducted an experiment to compare the effects of 2 disinfectants (Lysol® and household bleach) on the trappability of 4 small mammal species (Peromyscus maniculatus, Neotamias spp., and Spermophilus lateralis). We established triplicate trap grids in 2 forest types (red fir and mixed conifer), each consisting of a 6 × 6 array of Sherman live-traps placed at 10-m intervals. Traps were given 1 of 3 treatments: control (water), Lysol, …

Environmental Correlates Of Abundances Of Mosquito Species And Stages In Discarded Vehicle Tires, Donald A. Yee, Jamie M. Kneitel, Steven A. Juliano

Faculty Publications – Biological Sciences

Discarded vehicle tires are a common habitat for container mosquito larvae, although the environmental factors that may control their presence or abundance within a tire are largely unknown. We sample discarded vehicle tires in six sites located within four counties of central Illinois during the spring and summer of 2006 to determine associations between a suite of environmental factors and community composition of container mosquitoes. Our goal was to find patterns of association between environmental factors and abundances of early and late instars. We hypothesized that environmental factors correlated with early instars would be indicative of oviposition cues, whereas environmental …

Direct And Indirect Effects Of Climate Change On Amphibian Populations, Andrew R. Blaustein, Susan C. Walls, Betsy A. Bancroft, Joshua J. Lawler, Catherine L. Searle, Stephanie S. Gervasi

Biology Faculty Scholarship

As part of an overall decline in biodiversity, populations of many organisms are declining and species are being lost at unprecedented rates around the world. This includes many populations and species of amphibians. Although numerous factors are affecting amphibian populations, we show potential direct and indirect effects of climate change on amphibians at the individual, population and community level. Shifts in amphibian ranges are predicted. Changes in climate may affect survival, growth, reproduction and dispersal capabilities. Moreover, climate change can alter amphibian habitats including vegetation, soil, and hydrology. Climate change can influence food availability, predator-prey relationships and competitive interactions which …

Webs In Vitro And In Vivo: Spiders Alter Their Orb-Web Spinning Behavior In The Laboratory, Andrew Sensenig, Ingi Agnarsson, Taylor M. Gondek, Todd A. Blackledge

Biology Faculty Research

Many studies of the elegant architectures of orb webs are conducted in controlled laboratory environments that remove environmental variability. The degree to which spider behavior in these circumstances resembles that of spiders in the wild is largely unknown. We compared web architecture and silk investment of furrowed orb weavers Larinioides corium's (Clerck 1757) building webs in laboratory cages and spinning webs on fences in the field and found significant differences. The volume of major ampullate silk in radii was 53% lower in cage webs, primarily because the silk was 50% thinner, but also because spiders tended to spin 14% fewer …

Molecular Tools For Understanding The Population Genetic Effects Of Habitat Restoration On Butterflies, Joseph R. Marquardt

Mahurin Honors College Capstone Experience/Thesis Projects

No abstract provided.

Involvement Of Vav2 In The Epha4 Signaling Pathway Of Xenopus Laevis As A Possible Rho Regulator, Jessica Kopala

Senior Honors Theses and Projects

The purpose of this research is to shed light on the involvement of the Vav2 guanine nucleotide exchange factor in the Xenopus laevis EphA4 signaling pathway. In the first phase of the project, the presence of Vav2 mRNA within seven different Xenopus laevis embryogenic stages was detected via embryogenic stage collection, retrotranscription, PCR, using forward and reverse Vav2 primers, agarose gel electrophoresis, and UV gel visualization. In the second phase of the project, Western Blotting techniques were used to determine the presence of Vav2 protein in Xenopus laevis embryogenic stages.

A Model For Understanding Epilepsy In Peromyscus, Kevin Ryan, Gabor Szalai

Journal of the South Carolina Academy of Science

No abstract provided.

The Effects Of The Sumter Wastewater Treatment Plant On The Survival And Reproduction Of Ceriodaphnia Dubia In Chronic Toxicity Tests, Erin Worley, Pearl R. Fernandes, S. Michele Harmon, Jeff Steinmetz

Journal of the South Carolina Academy of Science

No abstract provided.

Do Snakes Use Olfactory Receptors In The Nose To Detect Odors?: A Prediction Based On The Percentage Of Nonfunctional Olfactory Receptor Genes Amplified In Four Species Of Snakes, Taylor Byerly, Amanda Robinson, Michelle Vieyra

Journal of the South Carolina Academy of Science

No abstract provided.

Associative Learning In Larval Dosophila Melanogaster: The Role Of Heredity In Learning Speed And Persistence Of Leaning Into Adulthood, Jasmin Hicklen, Domonique Jones, Michelle Vieyra

Journal of the South Carolina Academy of Science

No abstract provided.

Seed Dispersal By Pulp Consumers, Not ‘‘Legitimate’’ Seed Dispersers, Increases Guettarda Viburnoides Population Growth, Andrea P. Loayza, Tiffany M. Knight

Biology Faculty Research

We examined the effect of seed dispersal by Purplish Jays (Cyanocorax cyanomelas; pulp consumers) and the Chestnut-eared Araçari (Pteroglossus castanotis; "legitimate" seed dispersers) on population growth of the small tree Guettarda viburnoides (Rubiaceae) in northeastern Bolivian savannas. Because each bird species differs with respect to feeding and post-feeding behavior, we hypothesized that seed dispersal by each species will contribute differently to the rate of increase of G. viburnoides, but that seed dispersal by either species will increase population growth when compared to a scenario with no seed dispersal. To examine the effects of individual dispersers on the future population size …

Chapter 27 – Studying Plus-End Tracking At Single Molecule Resolution Using Tirf Microscopy, Ram Dixit, Jennifer L. Ross

Biology Faculty Research

The highly dynamic microtubule plus-ends are key sites of regulation that impact the organization and function of the microtubule cytoskeleton. Much of this regulation is performed by the microtubule plus-end tracking (+TIP) family of proteins. +TIPs are a structurally diverse group of proteins that bind to and track with growing microtubule plus-ends in cells. +TIPs regulate microtubule dynamics as well as mediate interactions between microtubule tips and other cellular structures. Most +TIPs can directly bind to microtubules in vitro; however, the mechanisms for their plus-end specificity are not fully understood. Cellular studies of +TIP activity are complicated by the fact …

Commentary Of Off-Label Prescribing: A Call For Heightened Professional And Government Oversight, Mark A. Jaffe

Biology Faculty Articles

No abstract provided.

Tourist Behavior And Decibel Levels Correlate With Threat Frequency In Tibetan Macaques (Macaca Thibetana) At Mt. Huangshan, China, Lucy A. Ruesto, Lori K. Sheeran, Megan D. Matheson, Jin-Hua Li, R. Steven Wagner

Biology Faculty Scholarship

Tourism is a common component of management practices directed toward endangered species and habitats, but few studies have explored the potential stressors that may occur to nonhumans as objects of tourism. We examined the impact that tourists have on provisioned, habituated Tibetan macaques (Macaca thibetana). Data were collected during August 2005 at the Valley of the Wild Monkeys (VWM), Mt. Huangshan, China. From a tourist viewing platform, we measured tourist densities, behaviors (for example, foot, hand, and mouth noises; mimicking monkeys; throwing objects or food), and decibel levels. Frequencies of monkey threats in the provisioning area of their …

Bioluminescence In The Sea, Steven H.D. Haddock, Mark A. Moline, James F. Case

Biological Sciences

Bioluminescence spans all oceanic dimensions and has evolved many times—from bacteria to fish—to powerfully influence behavioral and ecosystem dynamics. New methods and technology have brought great advances in understanding of the molecular basis of bioluminescence, its physiological control, and its significance in marine communities. Novel tools derived from understanding the chemistry of natural light-producing molecules have led to countless valuable applications, culminating recently in a related Nobel Prize. Marine organisms utilize bioluminescence for vital functions ranging from defense to reproduction. To understand these interactions and the distributions of luminous organisms, new instruments and platforms allow observations on individual to oceanographic …

The Metabolic Demands Of Swimming Behavior Influence The Evolution Of Skeletal Muscle Fiber Design In The Brachyuran Crab Family Portunidae, Kristin M. Hardy, Sean C. Lema, Stephen T. Kinsey

Biological Sciences

We investigated the influence of intracellular diffusion on muscle fiber design in several swimming and non-swimming brachyuran crabs. Species with sustained swimming behavior had aerobic dark fibers subdivided into small metabolic functional units, creating short diffusion distances necessary to support the high rates of aerobic ATP turnover associated with endurance activity. This dark fiber design was observed in all swimming species including Ovalipes ocellatus, which has apparently evolved swimming behavior independently of other Portunidae. In addition, we observed fiber and subdivision size-dependent differences in organelle distribution. Mitochondria, which rely on oxygen to function, were uniformly distributed in small fibers/subdivisions, …

Mitochondrial Inheritance And Natural Phenotypic Variation Among Caenorhabditis Briggsae Populations, Anna Luella Coleman-Hulbert

Dissertations and Theses

Mutations affecting the mitochondrial electron transport chain cause numerous neurodegenerative disorders in humans and affect longevity in other organisms. A natural model system to study the relationship between mitochondrial function and aging within an evolutionary or population genetic context has been lacking. Natural populations of Caenorhabditis briggsae nematodes were recently found to harbor mitochondrial genetic variation with likely functional consequences for aging. Specifically, C. briggsae isolates containing high frequencies of a deletion mutation affecting the mitochondrial NADH dehydrogenase 5 (ND5) gene were found to have reduced reproductive fitness and lifespan and elevated levels of mutagenic superoxide. Here, rates …