Digital Commons Network^™

The Feasibility Of Using Drones To Count Songbirds, Andrew M. Wilson, Janine M. Barr, Megan E. Zagorski

Environmental Studies Student Conference Presentations

Point and transect counts are the most common bird survey methods, but are subject to biases and accessibility issues. To eliminate some of these biases, we propose attaching a recorder to a consumer-grade quadcopter (Unmanned Aerial Vehicle, or UAV) to estimate songbird populations from audio recordings. We conducted a blind experiment using broadcast recordings to estimate the detection radius of a compact recorder attached to a UAV, and found that the detection radius did not vary significantly when the UAV was flown at elevations of 20, 40 and 60m. We field tested our system by comparing UAV-based bird counts with …

Comparative Analyses Of Transcriptome Data From Beef Cattle Persistently Infected With Bovine Viral Diarrhea Virus, Sara Michelle Nilson

Department of Animal Science: Dissertations, Theses, and Student Research

Persistent infection (PI) with Bovine Viral Diarrhea Virus (BVDV) is a major source of economic loss for the livestock industry. Persistent infection occurs when a dam is exposed to the virus during 42 to 125 days of gestation and the virus is passed to the fetus without an adaptive immune response. These PI calves serve as continuous sources of infection to others. The identification of differences in expression of gene networks and/or genetic markers associated with infection could assist in the development of novel strategies to prevent, control, or treat BVDV. To examine the host response to PI, RNA-Seq data …

Genome-Wide Association Study For Feed Efficiency Traits Using Snp And Haplotype Models, Kashly Rene Schweer

Department of Animal Science: Dissertations, Theses, and Student Research

Feed efficiency has long been recognized for its economic importance in beef cattle production systems. Feed intake is not a routinely collected trait on-farm due to the expense of measuring individual feed intake. Identification of genomic regions associated with feed efficiency and its component traits would be advantageous for selection programs. The objective of this study was to uncover genomic regions associated with average daily gain (ADG) and average daily feed intake (ADFI) through genome-wide association studies (GWAS) with SNP and haplotype Bayesian models. Phenotypes of ADG and ADFI along with genotypes from the BovineSNP50v2 array from crossbred steers and …

Evaluation Of Hematological And Serum Biochemical Profiles Associated With The Supplementation Of Zilpaterol Hydrochloride To Feedlot Heifers, Sara Elizabeth Sieren

Department of Animal Science: Dissertations, Theses, and Student Research

Supplementation of zilpaterol hydrochloride (ZH; Zilmax^®) to cattle has been suggested to have a negative impact on well-being of cattle. The objective of this study was to evaluate the hematological and serum biochemical profiles in feedlot heifers supplemented with ZH in a minimal stress environment. Heifers were randomly assigned to one of two treatment groups: Control (CON no ZH), or ZH (supplemented with ZH at 8.33mg/kg of feed on a DM basis). The study was conducted over a period of 25 d (-2 to 23), with three serum collection periods [-2 to 4 d (ZH supplementation began on …

Evaluation Of The Metabolic Response, Blood Chemistry Profile, And Cardiac Morphology Of Beef Heifers Supplemented With Zilpaterol Hydrochloride Followed By An Endocrine Induced Stress Challenge, Joe O. Buntyn

Department of Animal Science: Dissertations, Theses, and Student Research

The objective of this study was to determine the metabolic, stress, hematology, organ weights, histology and cardiac anatomical features of beef heifers supplemented with zilpaterol hydrochloride (ZH) when exposed to a corticotropin-releasing hormone (CRH) and arginine vasopressin (VP) challenge. Crossbred heifers (n = 20; 556 ± 7 kg BW) were randomized into two treatment groups: 1) Control (CON): no ZH, and 2) Zilpaterol (ZIL): supplemented with ZH at 8.33 mg / kg (DM basis). The ZIL group was supplemented ZH for 20 d, with a 3-d withdrawal period. On d 24, heifers received an intravenous bolus of CRH (0.3 µg …

Effects Of Salt And Nitrite Concentration On The Shelf Life Of Deli-Style Ham, Regan Elise Stanley

Department of Animal Science: Dissertations, Theses, and Student Research

Deli-style hams were manufactured to measure the effects of salt and nitrite concentration on shelf life and physicochemical characteristics. Three replications of deli-style ham treatments were manufactured in a 3 x 4 factorial arrangement of salt concentration (0.7%, 1.4%, or 2.1%, meat block basis) and nitrite concentration and source (0 ppm, 100 ppm or 200 ppm sodium nitrite, SN, or 100 ppm sodium nitrite equivalent from pre-converted celery juice powder, CP; Veg Stable 506, Florida Food Products). Salt concentration, water activity, cook yield, and texture profile analysis (TPA) were measured on w 0. Color, pH, residual nitrite, and aerobic and …

Development Of Terminal And Maternal Economic Selection Indices In Beefmaster Cattle, Kathleen Pearl Ochsner

Department of Animal Science: Dissertations, Theses, and Student Research

In the design of economic selection indices, the relative importance of traits in the breeding objective is reflected by their relative economic weighting. The objective of this study was to develop two economic selection indices for Beefmaster cattle: one for a terminal production system and one for a maternal production system. The terminal index was developed assuming bulls are mated to mature cows with all resulting progeny harvested. The maternal index was developed assuming bulls are mated to a combination of heifers and mature cows, with resulting progeny retained as replacements or sold at weaning.

National average prices from 2010 …

Metabolomics Approach To Investigate Oxidation Stabilities In Different Bovine Muscles With Postmortem Aging, Danyi Ma

Open Access Theses

Postmortem aging has been extensively practiced in the meat industry for decades due to its beneficial impact on improving eating quality attributes. However, prolonged postmortem aging may adversely impact color and/or lipid oxidation stabilities of meat, leading to decreased display shelf-life and increased rancid off-flavor. As physical/biochemical changes occur during postmortem aging, metabolites that impart antioxidant or pro-oxidant activities are generated or consumed, which could be related to the oxidation stabilities of postmortem muscles with aging. However, the underlying mechanism of the aging-induced oxidation susceptibility has not been fully established. Therefore, the overall objective of this thesis was to understand …

Evaluating The Physical Welfare Of Dogs In Commercial Breeding Facilities In The United States, Moriah J. Hurt

Open Access Theses

Despite high levels of public concern, the state of commercial breeding (CB) dog welfare is largely unknown. Therefore, this study aimed to characterize the physical welfare of dogs in CB facilities and their environment in Indiana. This study specifically aimed 1) to characterize dog foot health in CB facilities as a function of the length of time dogs were housed on a given flooring substrate, 2) to characterize visual dog body cleanliness and visual kennel cleanliness as a function of the flooring substrate, 3) to determine the efficacy of kennel cleaning procedures and 4) to characterize the dog dental and …

Influence Of Dietary Component Manipulation And Feed Management Strategies On Growth And Rumen Development Of Weaned Dairy Heifers, Tana Shea Dennis

Open Access Dissertations

Well-developed replacement heifers provide a central foundation for the continued success of the dairy industry. Emphasis on improving pre-weaned calf nutrition has predominated in the industry, but opportunities exist to improve post-weaning heifer nutrition and management. We aimed to evaluate common feed management strategies seen in the industry and their effects on growth, feed efficiency (G:F), and rumen development of calves from birth to 8 mo of age using pen- and individually-fed animal trials. Little information exists regarding post-weaning performance and rumen development of calves fed conventional or high planes of nutrition pre-weaning; therefore, we evaluated two milk replacer feeding …

Trophoblast Major Histocompatibility Complex Class I Expression Is Associated With Immune-Mediated Rejection Of Bovine Fetuses Produced By Cloning, Heloisa M. Rutigliano, Aaron J. Thomas, Amanda Wilhelm, Benjamin R. Sessions, Brady A. Hicks, Donald H. Schlafer, Kenneth L. White, Christopher J. Davies

Animal, Dairy, and Veterinary Science Faculty Publications

Trophoblast cells from bovine somatic cell nuclear transfer (SCNT) conceptuses express major histocompatibility complex class I (MHC-I) proteins early in gestation, and this may be one cause of the significant first-trimester embryonic mortality observed in these pregnancies. MHC-I homozygous-compatible (n = 9), homozygous-incompatible (n = 8), and heterozygous-incompatible (n = 5) SCNT pregnancies were established. The control group consisted of eight pregnancies produced by artificial insemination. Uterine and placental samples were collected on Day 35 ± 1 of pregnancy, and expression of MHC-I, leukocyte markers, and cytokines were examined by immunohistochemistry. Trophoblast cells from all SCNT pregnancies expressed MHC-I, while …

Effects Of Amino Acid Supplementation Of Reduced Crude Protein (Rcp) Diets On The Performance And Carcass Quality Of Growing-Finishing Swine, Ashley Nicole Young

Graduate Theses and Dissertations

Barrows and gilts (215/gender) were used to test the effects of synthetic AA supplementation of reduced CP diets on the growth performance and quality characteristics of the LM and the fatty acid composition of the LM and s.c. jowl fat from growing-finishing swine. Pigs were blocked by BW within gender, and allocated randomly to pens (6 pigs/pen) which were then assigned randomly within each block and gender to either corn-SBM diets 1) that were devoid of synthetic lysine (Ctrl); 2) with reduced CP diets where lysine was added to all diets (RCP1); 3) with reduced CP where lysine, threonine, and …

Efficacy Of A Novel Intranasal Zinc Solution On The Microbiome, Health, And Growth Performance Of High-Risk, Newly Received Stocker Cattle, Makenzie Foster

Graduate Theses and Dissertations

The objective of this study was to determine if using an intranasal zinc (Zn) solution would impact health and growth performance of high-risk stocker cattle. Male beef calves (n = 239; 3 arrival dates [block]; initial BW = 276 ± 2.4 kg) were stratified by arrival gender and BW and assigned to 1 of 2 treatments: 1) treated with 3 ml of a Zn solution containing 36.24 mg of Zn administered intranasally, or 2) control, in which calves were not treated. Calves were observed daily and if exhibiting signs of morbidity and a rectal temperature ≥ 40° C they were …

Assessment Of The Level Of Protection Against Coccidiosis In Broiler Breeders Conferred By A Live Anticoccidial Vaccine, And Its Influence On Early Growth And Development., Muhammed Shameer Abdul Rasheed

Graduate Theses and Dissertations

Coccidiosis continues to be a great challenge to the poultry industry all over the world and in broiler breeders vaccination with live oocysts of Eimeria has been widely adopted as a control measure. Broiler breeders are usually subjected to feed restriction during their early growth however no studies have been undertaken on the effects of vaccination in birds whose feed has been restricted in this manner. The objective of this study was to assess the level of protection acquired by broiler breeder chickens when immunized at day-old with live eimerian oocysts and given a restricted diet. Effects upon growth and …

Identification Of Biomarkers Associated With Rous Sarcoma Virus-Induced Tumors In Two Divergently Selected Chicken Lines, Ashley Hayden

Graduate Theses and Dissertations

Poultry has become especially important to genetic research due to breeding feasibility, short generation turnover, and ease of maintaining large populations. The discovery of virus induced cancer has paved the way for further genetic studies. Rous Sarcoma Virus (RSV) is a tumor-causing virus that infects poultry. While not prevalent today, it can serve as a model for virus-induced cancer in humans and create additional insight to marker assisted selection in poultry. Genetically selected Arkansas Progressor (AP) and Arkansas Regressor (AR) chicken lines have been established and maintained at the Arkansas Experimental Station (AES) in Fayetteville, AR. Previous research has investigated …

Comparisons Of Selected Household And Commercial Disinfectants Against Poultry Salmonella Isolates And A Survey Of Internal Parasites In Backyard Poultry In Arkansas, Kayleigh Moyle

Graduate Theses and Dissertations

Backyard and exhibition poultry have been gaining in popularity and as such there has been a large increase in the number of small flocks. As the interaction with poultry has increased, so has the opportunity for diseases and parasites, for both birds and people. One of the major zoonotic illnesses is caused by the bacteria Salmonella, which can be found in commercial and small flocks. Salmonella is the number 2 contributor of foodborne illnesses so its prevalence in commercial flocks is of high concern. Despite improved cleaning, disinfection, and biosecurity practices, there is still potential for disease outbreaks and infections …

Blackbirds, Richard A. Dolbeer, George M. Linz

Wildlife Damage Management Technical Series

The term blackbird loosely refers to a diverse group of about 10 species of North American birds that belong to the avian family Icteridae. The most common species include: Red-winged blackbird (Agelaius phoeniceus) Common grackle (Quiscalus quiscula) Great-tailed grackle (Quiscalus mexicanus) Brown-headed cowbird (Molothrus ater) Yellow-headed blackbird (Xanthocephalus xanthocephalus) Brewer’s blackbird (Euphagus cyanocephalus) Rusty blackbird (Euphagus carolinus) In addition to blackbirds, this family includes orioles, meadowlarks, and bobolinks.

Human-Wildlife Conflicts 1 Damage Identification 3 Management Methods 4 Economics 7 Species Overview 8 Legal Status 11 Glossary …

Double-Crested Cormorants, Brian S. Dorr, Kristi L. Sullivan, Paul D. Curtis, Richard Chipman, Russell D. Mccullough

Wildlife Damage Management Technical Series

The history of conflict between double-crested cormorants (Figure 1) and human interest in fisheries is long and convoluted. Following a low point in the 1970s, populations of cormorants expanded in North America, as did concerns about impacts on fisheries. By the late 1990s, natural resource agencies in 27 states reported losses of free-ranging fish stocks to cormorants. Agencies in 10 states, ranging from the Southwest to the Northeast, considered cormorant predation to be of moderate to major concern to fishery management.

Overall, double-crested cormorants are not major consumers of commercial and sportfish species. However, exceptions have been recorded at specific …

Bird Dispersal Techniques, Thomas W. Seamans, Allen L. Gosser

Wildlife Damage Management Technical Series

Conflicts between humans and birds likely have existed since agricultural practices began. Paintings from ancient Greek, Egyptian, and Roman civilizations depict birds attacking crops. In Great Britain, recording of efforts at reducing bird damage began in the 1400s, with books on bird control written in the 1600s. Even so, the problem persists. Avian damage to crops remains an issue today, but we also are concerned with damage to homes, businesses, and aircraft, and the possibility of disease transmission from birds to humans or livestock. Successful dispersal techniques should capitalize on bird sensory capabilities. If birds cannot perceive the dispersal technique, …

Geese, Ducks And Coots, John L. Cummings

Wildlife Damage Management Technical Series

Canada geese, snow geese, ducks, and American coots all have been implicated in agricultural crop and turf damage. Canada geese and snow geese that graze on winter wheat and rye crops can reduce subsequent grain and vegetative yields. Canada geese also cause serious damage to sprouting soybeans in spring and to standing cornfields in the autumn. The most common damage to agricultural resources associated with geese results from consumption of crops. Other impacts involve unacceptable accumulations of feces in pastures, trampling of emerging crops, and increased erosion and runoff from fields where the cover crop has been grazed. Canada geese …

Elucidating The Genetic Cause To Ascites Syndrome In Broiler Chickens Utilizing Multi-Generational Genome Wide Association Studies, Katy Tarrant

Graduate Theses and Dissertations

Ascites syndrome in broiler chickens has developed into a source of economic loss in the last three decades. Intensive selective pressure, and implementation of flock management practices, has successfully reduced ascites frequency, but has not eliminated its occurrence. For this reason, it is imperative to better understand the genetic cause to ascites in broiler chickens. Previous studies of this magnitude have been attempted, but, thus far, a consensus of genomic associations have not been made. This collection of studies was aimed at identifying and interpreting genomic and genetic associations to ascites phenotype specific to a broiler line representative of a …

Earlier Nesting By A Predatory Bird Is Associated With Human Adaptations To Climate Change, Shawn Heath Smith

Boise State University Theses and Dissertations

Advancing growing seasons and prey abundance drive earlier breeding in dietary specialists because, ultimately, consumers benefit by timing their reproduction to coincide with peak prey abundance. The selective pressure to breed earlier may be lower for species that forage on diverse prey items that vary in abundance both spatially and temporally. The selective pressure may be reduced further if predators have access to a mosaic of habitats, each of which having different shifts in growing seasons. We studied whether earlier breeding of a predatory generalist, the American kestrel (Falco sparverius) nesting in a mosaic of habitat types was …

Polyandry In The Absence Of Fitness Benefits In A Species With Female-Biased Sexual Size Dimorphism, Marie Claire Chelini, Eileen A. Hebets

Eileen Hebets Publications

Most studies exploring the evolution of female mating systems focus on species in which females are either monandric (mate with a single male) or highly polyandric (mate with multiple males), but less is understood about variation in mating decisions within a species. How and why do females of a single species decide whether or not to copulate with additional mates? In this study we attempt to answer this question in the highly dimorphic crab spider, Mecaphesa celer, whose females may be either monandric or polyandric. We tested three hypotheses: (1) a female’s decision to remate is based on sequential mate …

Development Of Genomic Resources For The Evaluation Of Red Snapper, An Emerging Species Candidate For Marine Aquaculture And Stock Enhancement, Adrienne Elise Norrell

Master's Theses

The northern red snapper (Lutjanus campechanus) is a highly targeted reef fish candidate for marine aquaculture and stock enhancement in the southern United States. This work aimed to develop genomic resources for the genetic management of aquaculture programs and to investigate population structure using high-throughput sequencing technologies. Eighty-four new microsatellite markers were developed through screening of Illumina paired-end sequencing reads. Microsatellite loci and Single Nucleotide Polymorphisms (SNPs) generated through Restriction Site Associated DNA (RAD) sequencing were assayed in 5 outbred full-sib families to construct a high-density linkage map of the red snapper genome. The map consists of 7,964 …

Growth And Reproduction Of Southern Flounder (Paralichthys Lethostigma) In The North-Central Gulf Of Mexico, Morgan Marie Corey

Master's Theses

Southern Flounder Paralichthys lethostigma is the most commonly harvested flatfish in the north-central Gulf of Mexico (GOM) and supports a major inshore recreational fishery, yet knowledge of the species’ life history is greatly limited. The objective of this research was to describe the growth and reproduction of Southern Flounder in the Mississippi stock. Fish were collected during September 2014 to March 2016 using primarily recreational fishing techniques. Otoliths (n = 313) were sectioned to estimate age, and multiple length-at-age models were fit to total length (TL, mm) and age estimate (y) data. Gonadal tissue samples (n = 221) …

Ruminant Supplementation Of Gluconeogenic Substrates Via Drinking Water, Gabriela Volpi-Lagreca

All Dissertations

Dark cutting or high pH meat is found in all meat species, inducing significant losses to the meat industry. Dark cutting meat is a direct consequence of low muscle glycogen at slaughter, which affects the normal acidification of meat during rigor development, hence, the ultimate pH remains high. The ultimate pH of the meat has a great influence on certain meat quality parameters, such as color, water holding capacity, and tenderness. An animal exposed to stress previous to slaughter may significantly depletes its glycogen reserves. This situation leads to a high ultimate pH if the animal is slaughtered before it …

Innate Immunity In Chickens: In Vivo Responses To Different Pathogen Associated Molecular Patterns, Kristen Alicia Byrne

Graduate Theses and Dissertations

Pattern recognition receptors (PRRs) on host cells recognize motifs known as pathogen associated molecular patterns (PAMPs) that are common to groups of microbes. Examples include LPS on Gram-negative bacteria, the structural motif PGN common to all bacteria, MDP the smallest immunostimulatory unit of PGN, and poly I:C the dsRNA analog. PAMP recognition by and stimulation of the innate immune system is crucial to an individual’s ability to quickly limit microbial growth and stimulate the adaptive immune system. Characterization of the in vivo immune responses initiated by PAMPs has not been directly addressed. Using growing feathers (GF) as a novel intradermal …

Characterization Of Broiler Lines Divergently Selected For Breast Muscle Color, Sara Katherine Orlowski

Graduate Theses and Dissertations

An increase in the consumption of poultry has generated an increase in demand for higher yielding broilers. This has led to an increase in atypical meat and issues with appearance. Color is a direct result of a pH decline as meat goes through rigor mortis with meat generally becoming lighter. If the pH declines too rapidly or too slowly, meat quality can suffer. Physical properties of meat can be altered by pH. A fast pH decline results in pale meat with decreased tenderness. A slow pH decline can result in darker meat with a reduced shelf-life. With a known relationship …

Evaluation Of Long-Acting Eprinomectin Compared To Conventional Anthelmintics In Cow/Calf Production, Elizabeth Ann Backes

Graduate Theses and Dissertations

Experiment 1, 83, newly weaned, fall-born crossbred heifer calves were allocated randomly to 1 of 3 anthelmintic treatments: 1) control (CON); 2) combination pour-on moxidectin and oxfendazole (MO); and 3) long-acting eprinomectin (LAE). Two preplanned orthogonal contrast statements were used: 1) to compare CON to treated cattle; and 2) to compare OXF to LAE. Heifer BW and BCS were greater (P≤0.02) from MO and LAE on d 112, 140, 154, 168, 182 compared to CON. Heifer cyclicity, estrous detection, natural service and overall pregnancy rates were greater (P≤0.02) for MO and LAE compared to CON. Cattle fecal egg counts (FEC) …

Associations Of Single Nucleotide Polymorphisms In The Bovine Prolactin, Melatonin Receptor 1a, And Dopamine Receptor D2 Genes With Hair Coat Shedding Scores And Productivity Traits In Beef Cattle, Laura R. Meyer

Graduate Theses and Dissertations

Calving rate is a qualitative trait regulated by several genes and is strongly affected by the environment. With the development of biotechnology and gene identification, scientists are able to determine which genes affect these productivity traits to improve accurate selection decisions. Prolactin (PRL) has been associated with reproductive traits, melatonin receptor 1a (MTNR1A) has been associated with meat quality traits, and the dopamine receptor D2 (DRD2) gene has been associated with hair coat score (HCS) in cattle. Our objective was to determine associations between mutations in the PRL, MTNR1A, and DRD2 genes and cow-calf profitability traits. Genomic DNA was extracted …