Digital Commons Network^™

Complete Genome Sequences Of Three Historically Important, Spatiotemporally Distinct, And Genetically Divergent Strains Of Zika Virus: Mr-766, P6-740, And Prvabc-59, Sangim Yun, Byunghak Song, Jordan C. Frank, Justin G. Julander, Irina A. Polejaeva, Christopher J. Davies, Kenneth L. White, Youngmin Lee

Animal, Dairy, and Veterinary Science Faculty Publications

Here, we report the 10,807-nucleotide-long consensus RNA genome sequences of three spatiotemporally distinct and genetically divergent Zika virus strains, with the functionality of their genomic sequences substantiated by reverse genetics: MR-766 (African lineage, Uganda, 1947), P6-740 (Asian lineage, Malaysia, 1966), and PRVABC-59 (Asian lineage-derived American strain, Puerto Rico, 2015).

Insect Consciousness: Fine-Tuning The Hypothesis, Jon Mallatt, Todd E. Feinberg

Animal Sentience

Although we are mostly supportive, we point out the strengths and weaknesses of Klein & Barron’s (2016) hypothesis that insects have the most basic form of consciousness. The strengths are in their application of Bjorn Merker’s vertebrate-derived ideas to arthropods, using their deep knowledge of insect brains. The weaknesses involve the controversial aspects of some of Merker’s ideas. We describe how the latter can be modified to strengthen the authors’ case for insect consciousness.

Feel Or Perspective?, Mark Rowlands

Animal Sentience

The title of Klein & Barron’s well-argued and thought-provoking target article is, “Insects have the capacity for subjective experience.” However, they also frame their claim using the term “consciousness,” which they seem to take as equivalent to “subjective experience.” This assumed equivalence, I shall argue, is problematic in a way that might vitiate their central argument.

Effects Of An Electronic, Motion-Activated Scarecrow On Foraging Time In Nocturnal Vertebrate Crop Pets In South Africa, Mallory Clouse

Mahurin Honors College Capstone Experience/Thesis Projects

The normal behaviors of animals can disrupt human activities, resulting in human wildlifeconflict. In South Africa, nocturnal crop raiders are a significant source of human wildlifeconflict for farmers. Major nocturnal pest animals are Cape porcupine (Hystrix africaeaustralis) and bushpig (Potamochoerus larvatus). Although methods of deterring animals from agricultural areas have been explored, nocturnal crop raiding remains difficult to mitigate. Most research studies focus on deterring non-human primates and elephants, but methods that may be successful in deterring such larger mammals are not necessarily effective at discouraging smaller, nocturnal crop raiders. This study examined the efficacy of …

Investment Appraisal Of Automatic Milking And Conventional Milking Technologies In A Pasture-Based Dairy System, John Shortall, Laurence Shalloo, Cathriona Foley, Roy D. Sleator, Bernadette O'Brien

Department of Biological Sciences Publications

The successful integration of automatic milking (AM) systems and grazing has resulted in AM becoming a feasible alternative to conventional milking (CM) in pasture-based systems. The objective of this study was to identify the profitability of AM in a pasture-based system, relative to CM herringbone parlors with 2 different levels of automation, across 2 farm sizes, over a 10-yr period following initial investment. The scenarios which were evaluated were (1) a medium farm milking 70 cows twice daily, with 1 AM unit, a 12-unit CM medium-specification (MS) parlor and a 12-unit CM high-specification (HS) parlor, and (2) a large farm …

Physical Separation From The Mate Diminishes Male’S Attentiveness Towards Other Females: A Study In Monogamous Prairie Voles Microtus Ochrogaster, Christine J. Delevan, Natalia A. Rodriguez, Karine M. Legzim, Fayeza Aliou, Jamie T. Parker, Maryam Bashad

Publications and Research

We tested whether continuous cohabitation in monogamous voles affects the mated male’s attentiveness to his breeding partner versus another female. Each male was housed in a 3-chamber apparatus with a Focal female (FF) and a Control female (CF) for 13 days then placed in a T-maze to assess his attentiveness to and memory of those females. The Distal male remained physically separated from both females, but received their distal cues. The Separate male cohabited with the FF for 3 days then remained physically separated from both females. The Disrupt male’s continuous cohabitation with the FF was disrupted by having him …

Universal Modes Of Awareness? A “Pre-Reflective” Premise, Uta M. Jürgens

Animal Sentience

Mark Rowlands holds that creatures endowed with pre-reflective awareness may qualify as persons: In pre-reflective awareness, the self and the unity of mental life are implicit in the stream of experience. Rowlands generalizes from an introspective analysis of pre-reflective consciousness in humans to pre-reflective awareness in general. I describe three examples of empirical findings that corroborate the assumption that animal minds have some of the same basic modes of pre-reflective awareness as human minds.

Contrasting Origin Of B Chromosomes In Two Cervids (Siberian Roe Deer And Grey Brocket Deer) Unravelled By Chromosome-Specific Dna Sequencing, Alexey I. Makunin, Ilya G. Kichigin, Denis M. Larkin, Patricia C. M. O'Brien, Malcolm A. Ferguson-Smith, Fengtang Yang, Anastasiya A. Proskuryakova, Nadezhda V. Vorobieva, Ekaterina N. Chernyaeva, Stephen J. O'Brien, Alexander S. Graphodatsky, Vladimir Trifonov

Biology Faculty Articles

Background

B chromosomes are dispensable and variable karyotypic elements found in some species of animals, plants and fungi. They often originate from duplications and translocations of host genomic regions or result from hybridization. In most species, little is known about their DNA content. Here we perform high-throughput sequencing and analysis of B chromosomes of roe deer and brocket deer, the only representatives of Cetartiodactyla known to have B chromosomes.

Results

In this study we developed an approach to identify genomic regions present on chromosomes by high-throughput sequencing of DNA generated from flow-sorted chromosomes using degenerate-oligonucleotide-primed PCR. Application of this method …

What If Klein & Barron Are Right About Insect Sentience?, Bob Fischer

Animal Sentience

If Klein & Barron are right, then insects may well be able to feel pain. If they can, then the standard approach to animal ethics generates some implausible results. Philosophers need to develop alternatives to this framework to avoid them.

Subjective Experience And Moral Standing, Andy Lamey

Animal Sentience

Klein & Barron’s analysis focuses on the capacity for any subjective experience at all. It does not seek to demonstrate that insects can experience pleasure and pain in particular. This would be something of which insects have not traditionally been thought capable. If further research were to demonstrate that one or more insect species turn out to be conscious, yet incapable of experiencing pleasure and pain, it would give rise to a philosophical question that ethicists have yet to answer: Would a creature that is conscious, but lacks the capacity to feel pain, have moral standing?

Phytochemicals In Animal Health; Diet Selection And Trade-Offs Between Costs And Benefits, Juan J. Villalba, Morgane Costes-Thire, Cecile Ginane

Nutrition, Dietetics, and Food Sciences Faculty Publications

Many plant tissues contain plant secondary compounds (PSC), which have long been recognised as defensive chemicals that deter herbivory via their toxic effects. However, herbivores may also benefit from including PSC into their diets. Plant-derived phenolics, terpenes and alkaloids have antiparasitic properties and sesquiterpene lactones have antibacterial, antifungal and antiparasitic properties. These actions are in part a consequence of the negative actions that PSC exert across several trophic levels, including the bacteria, parasites and fungi that inhabit herbivores’ bodies. Given the dual action, toxin and medicine, it is possible to hypothesise that self-selection of PSC by herbivores should occur when …

Is Cortex Necessary?, Sean Allen-Hermanson

Animal Sentience

A key contention of Klein & Barron (2016) is that consciousness does not depend on cortical structures. A critical appraisal suggests they have overestimated the strength of their evidence.

Who Is A Person? Whoever You Want It To Be, Gwen J. Broude

Animal Sentience

Rowlands provides an expanded definition of personhood that preserves the requirement of unity of mental life from the orthodox definition but argues that implicit unity of mind is sufficient for conferring personhood. This allows more or all animals to be considered persons. Implicit unity of mind may be a bridge too far for those who endorse the orthodox account of personhood, and for good reasons. More fundamentally, who gets to decide what personhood entails or that personhood per se matters to such other issues as who receives legal or moral status and consideration? Perhaps we should worry less about definitions …

Dominance Hierarchies In Horses: Comparing And Contrasting Different Methods For Assessing Hierarchies, Devyn Bailey

Ursidae: The Undergraduate Research Journal at the University of Northern Colorado

Understanding animal social structures is imperative when it comes to the care, housing and handling of large herd animals. Knowing how hierarchies are structured, along with environmental and physiological aspects that may affect them, will allow owners and breeders to house and care for their animals. The aim of my study was to better understand two methods used to assess dominance hierarchies in horses, Equus caballus, and to predict which method would be more useful for owners housing domestic horses. I designed an experiment where I compared a structured method, the paired feeding test, with behavioral observations from the …

Are Insects Sentient?, Michael Tye

Animal Sentience

I comment on the methodology used by Klein & Barron for dealing with the question of insect sentience and I briefly make a proposal of my own. Once it is granted that insects are sentient, a further question arises: which insects are subject to which states of sentience? Do insects feel pain, for example? If so, which ones? On the further question, I note, Klein & Barron have nothing to say.

Animal Grieving And Human Mourning, Matteo Colombo

Animal Sentience

King’s How animals grieve beautifully describes several ways in which animals and humans show a similar capacity for grief. Yet this book does not sufficiently emphasise the language-empowered capacity to objectify thinking and sentiments about death, which makes human mourning unique. Here I put this capacity into focus and relate it to the social-normative aspect of human mourning that seems to be missing in other animals.

Insects Join The Consciousness Fray, Bjorn H. Merker

Animal Sentience

Klein & Barron's review of recent insect neurobiology helps correct the impression that insect behavior is orchestrated without the benefit of central integrative mechanisms. Given their existence, the authors go on to ask whether these central mechanisms also feature the kind of integrative operations that support sentience, and propose that they do. Along the way they raise a number of conceptual and evidentiary issues of fundamental importance for the neuroscience of consciousness, allowing me to comment favorably on a number of them. I conclude by pointing to ways in which the conception of insect sentience they outline might be tested …

The Role Of Habitat Shaping Motion Detection In Two Songbirds, Elena A. Ritschard, Luke P. Tyrrell, Esteban Fernández-Juricic

The Summer Undergraduate Research Fellowship (SURF) Symposium

Double cones of birds are photoreceptors associated with motion perception, and perceiving motion is highly important to detect predators. Predation risks varies between habitats and may impose selective pressures that could affect organisms’ traits. There is evidence that birds show interspecific variations in visual system properties, such as the photoreceptor densities (single and double cones) and distribution across the retina. However, little is known about the relationship between the distribution of double cones and predator scanning strategies in birds living in different habitats. The goal of this study was to compare double cones distributions of birds that live in open …

Breeding Season Avian Community Composition And Prey Availability In Eucalyptus And Slash Pine Plantations Of Southwestern Louisiana, Elizabeth J. Messick

Electronic Theses and Dissertations

The increased demand for wood products related to industries such as bioenergy and paper has resulted in a need for a consistent supply of raw materials. Eucalyptus (Eucalyptus spp.) plantations have the potential to boost wood production for pulpwood and biomass feedstocks. Species characteristics such as rapid, indeterminate growth, coppice regrowth, resistance to disease and insects, and tolerance of a range of environmental conditions make these species successful short-rotation woody crops (SRWCs). Camden white gum (Eucalyptus benthamii), a more cold tolerant species, has made management of eucalyptus plantations viable in southern portions of the United States such …

Insects Have Agency But Probably Not Sentience Because They Lack Social Bonding, J. H. Van Hateren

Animal Sentience

Klein & Barron (2016) argue that insects have sentience because of functional similarities between the insect brain and vertebrate midbrain. Based on a recent theory of agency and consciousness, I argue that the functional similarities merely point to an advanced form of agency. Insects presumably lack the capacity for social bonding that may be required for subjective experiencing.

Bulletin No. 42: The Mamacoke Conservation Area, Glenn Dreyer, Robert Askins, Scott Peterson

Bulletins

No abstract provided.

Movement, Habitat Use, Reproduction, And Commercial Harvest Of Paddlefish In Lake Dardanelle, Arkansas, Adam Geik

Theses and Dissertations from 2016

Paddlefish Polyodon spathula are a valuable commercial species throughout much of their range including Lake Dardanelle, one of the most important commercial paddlefish fisheries in Arkansas. While fecundity, mortality, and age and growth of paddlefish stocks in Lake Dardanelle have been assessed previously, information on their movements, habitat utilization, and commercial harvest rates is lacking. To help fill this information gap, 39 paddlefish were tracked a minimum of once per month from October 2014 through September 2015. Habitat selection was determined for eight macrohabitat types and four bathymetric habitat types by comparing percent usage to percent availability. Four high-use (≥10%) …

Effects Of Human Disturbance On Physiology, Behavior, And Ornamentation In The Eastern Bluebird, Lauren Marjorie Gillespie

Dissertations

Overall, few studies have focused on anthropogenic disturbance on wildlife physiology. Research has typically focused on how environmentally contaminated areas or anthropogenic disturbance (e.g. noise, human activity) influences biodiversity, community structure and behavior of individual animals. However, understanding how disturbance influences some aspects of physiology can require sacrifice of the animal, prohibiting ecologically relevant measures of behavior and reproductive success. This research strives to examine covariation between testosterone (T) and corticosterone (CORT), plumage ornamentation, and behavior in two populations of eastern bluebirds (Sialia sialis) that differ in degree to which their habitat is modified by human activity.

In …

Neutering Of German Shepherd Dogs: Associated Joint Disorders, Cancers And Urinary Incontinence, Benjamin L. Hart, Lynette A. Hart, Abigail P. Thigpen, Neil H. Willits

Endocrinology Collection

German Shepherd Dogs are important in police and military work, and are a popular family pet. The debilitating joint disorders of hip dysplasia, cranial cruciate ligament tear (CCL) and elbow dysplasia can shorten a dog’s useful working life and impact its role as a family member. For this study, veterinary hospital records were examined over a 14.5-year period on 1170 intact and neutered (including spaying) German Shepherd Dogs for joint disorders and cancers previously associated with neutering. The diseases were followed through 8 years of age, with the exception of mammary cancer (MC) in females that was followed through 11 …

Insulin-Dependent Glucose Metabolism In Dairy Cows With Variable Fat Mobilization Around Calving, C. Weber, C. T. Schäff, U. Kautzsch, S. Börner, S. Erdmann, S. Görs, M. Röntgen, H. Sauerwein, R. M. Bruckmaier, C. C. Metges, B. Kuhla, H. M. Hammon

Physiology Collection

Dairy cows undergo significant metabolic and endocrine changes during the transition from pregnancy to lactation, and impaired insulin action influences nutrient partitioning toward the fetus and the mammary gland. Because impaired insulin action during transition is thought to be related to elevated body condition and body fat mobilization, we hypothesized that over-conditioned cows with excessive body fat mobilization around calving may have impaired insulin metabolism compared with cows with low fat mobilization. Nineteen dairy cows were grouped according to their average concentration of total liver fat (LFC) after calving in low [LLFC; LFC <24% total fat/dry matter (DM); n = 9] and high (HLFC; LFC >24.4% total fat/DM; n = 10) fat-mobilizing …

Improving Efficiency In Generating Submissions And Consistency Of Outcomes For Marine Stewardship Council (Msc) Based Assessments, Warrick Fletcher, Daniel J. Gaughan, Lynda Bellchambers Dr

Fisheries Research Reports

The prevalence of fishery certification schemes and associated ecolabels has grown over the last ten years with numerous ecolabels now in the marketplace e.g. Friends of the Sea, Naturland, SAI Global Trust (Parkes et al. 2010, Washington and Ababouch 2011, Ward and Phillips 2013). However, one of the most prominent and well regarded, particularly by eNGOs, is the Marine Stewardship Council (MSC) (Gutiérrez et al. 2012, Ponte 2012, Bush et al. 2013, Ward and Phillips 2013) which accounts for greater than 10 % of annual global harvest of wild capture fisheries (MSC 2014b).

Gascoyne Demersal Scalefish Resource : Draft Harvest Strategy, 2016-2021. Version 1.0, Western Australia. Dept. Of Fisheries.

Fisheries Management Papers

Harvest strategies for aquatic resources managed by the Western Australian Department of Fisheries (the Department) are formal documents prepared to support the decision-making processes and ensure these processes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2010). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA), Section 3, and the draft Aquatic Resources Management Bill 2015 (ARMB), Clause 9, which will replace the FRMA once enacted.

North Coast Demersal Scalefish Resource : Draft Harvest Strategy, 2016-2021. Version 1.0, Western Australia. Dept. Of Fisheries

Fisheries Management Papers

Harvest strategies for aquatic resources managed by the Western Australian Department of Fisheries (the Department) are formal documents prepared to support decision-making processes and ensure these processes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2010). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA), Section 3, and the draft Aquatic Resources Management Bill 2015 (ARMB), Clause 9, which will replace the FRMA once enacted.

North Coast Demersal Scalefish Resource : Draft Harvest Strategy : 2016 – 2021 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Gascoyne Demersal Scalefish Resource : Draft Harvest Strategy : 2016 – 2021 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.