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Elevated Levels Of External Cysteine Inhibit Nitrogen Fixation By The Methanogenic Archaeon Methanosarcina Acetivorans, Regan Massey May 2022

Elevated Levels Of External Cysteine Inhibit Nitrogen Fixation By The Methanogenic Archaeon Methanosarcina Acetivorans, Regan Massey

Biological Sciences Undergraduate Honors Theses

Methanogens are nitrogen fixing and methane producing archaea that play a key role in the cycling of carbon and nitrogen on earth. The global carbon and nitrogen cycle is vital to all life which makes the methanogen a primary organism of study. Methanogens are the only archaea capable of fixing nitrogen, and in order to do so, methanogens use a vital enzyme called the nitrogenase which fixes dinitrogen (N2) to ammonia (NH3). Expanding our understanding on metabolic processes of methanogens allows us to understand their environmental impact and advance their use in biotechnological applications. Methanosarcina acetivorans is the model used …


Spike Protein Structural Dynamics Of Sars-Cov-2 Coronaviruses Studied Using Molecular Dynamics, William Strickland May 2022

Spike Protein Structural Dynamics Of Sars-Cov-2 Coronaviruses Studied Using Molecular Dynamics, William Strickland

Biological Sciences Undergraduate Honors Theses

Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has overwhelmingly impacted the global population, accounting for millions of confirmed infections and deaths over the last year. The virus’s influence on the health and safety of individuals, the economy, and daily life has been disruptive and devastating. While SARS-CoV-2 and SARS-CoV-1, two closely related members of the SARS coronaviruses, have shown the ability to cross the species barrier and infect humans, SARS-CoV-2 has predominantly been the virus responsible for the number of infections presently known. SARS-CoV-2 has also proven to be volatile, as many variants have …


Structural Formation And Functionality Of The Spoiie Protein In Clostridium Difficile, Rachel Siebenmorgen May 2022

Structural Formation And Functionality Of The Spoiie Protein In Clostridium Difficile, Rachel Siebenmorgen

Biological Sciences Undergraduate Honors Theses

My research efforts were directed toward the structure and functionality of a protein, designated SpoIIE [11], which previously has been shown to regulate C. difficile peptide utilization in addition to sporulation and toxin release. The SpoIIE protein is found in all spore-forming gram-positive bacteria and is a crucial component in activation of transcription factors and septum formation thus affecting the regulation and timing of spore development [11,12]. A truncated form of the SpoIIE protein named SpoIIE∆TM was used in an effort to determine the structure of an important but uncharacterized linker domain of the protein. If the structure and specific …


Examining Difference In Social Perceptions Between Women Using Hormonal Contraceptives And Naturally Cycling Women, Caroline B. Johnson May 2022

Examining Difference In Social Perceptions Between Women Using Hormonal Contraceptives And Naturally Cycling Women, Caroline B. Johnson

Biological Sciences Undergraduate Honors Theses

The term “stress” refers to a person’s psychological and physiological response to the demands and pressures of the world around them (Farlex, 2021). Past research has shown that stress can have negative side effects on a person’s well-being (Aneshensel et al., 1991; Wunsch et al., 2017; Michie, 2002). Although people experience stress, some people perceive more stress than others. Perceptions are important because the way one understands certain conditions can elicit distinct emotional and physiological responses (Kemeny, 2003). An important factor that has not received a lot of attention is women’s use of hormonal contraceptives. In the United States, 24.4% …


Regulation Of The Reaction Between Cytochrome C And Cytochrome C Oxidase In The Mitochondria, Anders Nowell May 2022

Regulation Of The Reaction Between Cytochrome C And Cytochrome C Oxidase In The Mitochondria, Anders Nowell

Biological Sciences Undergraduate Honors Theses

Cytochrome c (Cc) is a multifunction protein that has important life and death functions in the cell. In the electron transport chain (ETC), Cc transfers electrons from cytochrome bc1 to cytochrome c oxidase (CcO), which helps build the electrochemical gradient that drives ATP synthase. The reaction of Cc with CcO is very important in ETC regulatory processes. Previous research shows phosphorylation sites in Cc that affect the binding with CcO, with measurable effects on kd, kf, and KD. These effects result in changes in mitochondrial membrane potentials, respiration, and reactive oxygen species (ROS) …


Using Community Science To Assess The Effect Of Wing Pattern And Weather On Butterfly Behavior, Abbigail Merrill May 2022

Using Community Science To Assess The Effect Of Wing Pattern And Weather On Butterfly Behavior, Abbigail Merrill

Animal Science Undergraduate Honors Theses

Signaling in insects is used as communication and for attraction of mates. The physical appearance of the insect as well as conditions such as weather can play a role in visual signaling, by influencing the wavelengths of light available, and subsequent signal detection. We do not know, however, whether signals butterflies present broadly correlate with how they behave. In this study, we looked at the wing patterns and behavior of butterflies in Northwest Arkansas over a 3.5-year period to assess the relationship between wing pattern, weather, and behavior. We used observational data collected by hundreds of University of Arkansas students …


Exploring Nitrogen Fixation In Methanosarcina Acetivorans, Rylee Cook May 2022

Exploring Nitrogen Fixation In Methanosarcina Acetivorans, Rylee Cook

Biological Sciences Undergraduate Honors Theses

As of 2016, the genomes of over sixty species of methanogenic archaea have been sequenced.4 Research on the genomes of methanogens such as M. acetivorans led to the characterization of numerous genes with unknown functions. Genes similar to those of nitrogenase have been shown to possess functions unrelated to nitrogen fixation, such as F430 biosynthesis genes. 5,6,7 My research focused on the uncharacterized gene clusters ma2032-33 and ma1631-33 (Figure 1). These genes have conserved nitrogenase domains: ma2032 has fused nifH and nifD domains, while ma2033 has a nifD domain. The ma1631-33 gene cluster contains two nitrogenase homologs and one iron …