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Full-Text Articles in Physics

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost Dec 2023

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …


Tardys Quantifiers: Extracting Temporal And Reversible Dynamical Symmetries, Nhat Vu Minh Nguyen, Arjendu K. Pattanayak, Andres Aragoneses May 2023

Tardys Quantifiers: Extracting Temporal And Reversible Dynamical Symmetries, Nhat Vu Minh Nguyen, Arjendu K. Pattanayak, Andres Aragoneses

2023 Symposium

One of the great challenges in complex and chaotic dynamics is to reveal the details of its underlying determinism. This can be manifest in the form of temporal correlations or structured patterns in the dynamics of a measurable variable. These temporal dynamical structures are sometimes a consequence of hidden global symmetries. Here we identify the temporal (approximate) symmetries of a semiconductor laser with external optical feedback, based on which we define the Temporal And Reversible DYnamical Symmetry (TARDYS) quantifiers to evaluate the relevance of specific temporal correlations in a time series. We show that these symmetries are also present in …


The Effect Of Damping By An Environment On Emergence Of Classicality, Paul Bracken Jan 2023

The Effect Of Damping By An Environment On Emergence Of Classicality, Paul Bracken

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

The role of dissipation with respect to a microscopic superposition of quantum states is investigated by means of master equations. This has implications for the study of the emergence of classicality from the quantum level. In particular, it illustrates why it is difficult to observe a macroscopic quantum state. The role of the environment is assumed by the measuring apparatus. A pure state is reduced to a mixture in the pointer basis of the system by means of the interaction with the apparatus. It is the intention that this type of analysis will have applications to experiments which are designed …


The Foundations Of Inference And Its Application To Fundamental Physics, Nicholas Matthew Carrara Aug 2021

The Foundations Of Inference And Its Application To Fundamental Physics, Nicholas Matthew Carrara

Legacy Theses & Dissertations (2009 - 2024)

This thesis concerns the foundations of inference – probability theory,entropic inference, information geometry, etc. – and its application to the Entropic Dynamics (ED) approach to Quantum Mechanics (QM) [21, 22, 41, 53, 56–61, 150–153, 165, 195, 196, 268]. The first half of this thesis, chapters 2-6, concern the development of the inference framework. We begin in chapter 2 by discussing de- ductive inference, which involves formal logic and it’s role in access- ing the truth of propositions. We eventually discover that deductive inference is incomplete, in that it can’t address situations in which we have incomplete information. This necessitates a …


Dynamic Neuromechanical Sets For Locomotion, Aravind Sundararajan Dec 2020

Dynamic Neuromechanical Sets For Locomotion, Aravind Sundararajan

Doctoral Dissertations

Most biological systems employ multiple redundant actuators, which is a complicated problem of controls and analysis. Unless assumptions about how the brain and body work together, and assumptions about how the body prioritizes tasks are applied, it is not possible to find the actuator controls. The purpose of this research is to develop computational tools for the analysis of arbitrary musculoskeletal models that employ redundant actuators. Instead of relying primarily on optimization frameworks and numerical methods or task prioritization schemes used typically in biomechanics to find a singular solution for actuator controls, tools for feasible sets analysis are instead developed …


Pair-A-Dice Lost: Experiments In Dice Control, Robert H. Scott Iii, Donald R. Smith Jan 2020

Pair-A-Dice Lost: Experiments In Dice Control, Robert H. Scott Iii, Donald R. Smith

UNLV Gaming Research & Review Journal

This paper presents our findings from experiments designed to test whether we could use a custom-made dice throwing machine applying common dice control methods to produce dice rolls that differ from random. In earlier research we calculated the percentages of control a craps player needs to break even or beat the house (Smith and Scott, 2018). Using the most common practices of dice control in craps, we established how dice should be configured (i.e., set) and thrown to achieve certain outcomes such as not rolling a seven in the point cycle. We decided to run experiments to see if a …


Measuring And Modeling Information Flow On Social Networks, Tyson Charles Pond Jan 2020

Measuring And Modeling Information Flow On Social Networks, Tyson Charles Pond

Graduate College Dissertations and Theses

With the rise of social media, researchers have become increasingly interested in understanding how individuals inform, influence, and interact with others in their social network and how the network mediates the flow of information. Previous research on information flow has primarily used models of contagion to study the adoption of a technology, propagation of purchase recommendations, or virality of online activity. Social (or "complex") contagions spread differently than biological ("simple") contagions. A limitation when researchers validate contagion models is that they neglect much of the massive amounts of data now available through online social networks. Here we model a recently …


Probability Density Of The Fractional Langevin Equation With Reflecting Walls, Thomas Vojta, Sarah Skinner, Ralf Metzler Oct 2019

Probability Density Of The Fractional Langevin Equation With Reflecting Walls, Thomas Vojta, Sarah Skinner, Ralf Metzler

Physics Faculty Research & Creative Works

We investigate anomalous diffusion processes governed by the fractional Langevin equation and confined to a finite or semi-infinite interval by reflecting potential barriers. As the random and damping forces in the fractional Langevin equation fulfill the appropriate fluctuation-dissipation relation, the probability density on a finite interval converges for long times towards the expected uniform distribution prescribed by thermal equilibrium. In contrast, on a semi-infinite interval with a reflecting wall at the origin, the probability density shows pronounced deviations from the Gaussian behavior observed for normal diffusion. If the correlations of the random force are persistent (positive), particles accumulate at the …


Probabilities Involving Standard Trirectangular Tetrahedral Dice Rolls, Rulon Olmstead, Doneliezer Baize Oct 2018

Probabilities Involving Standard Trirectangular Tetrahedral Dice Rolls, Rulon Olmstead, Doneliezer Baize

Rose-Hulman Undergraduate Mathematics Journal

The goal is to be able to calculate probabilities involving irregular shaped dice rolls. Here it is attempted to model the probabilities of rolling standard tri-rectangular tetrahedral dice on a hard surface, such as a table top. The vertices and edges of a tetrahedron were projected onto the surface of a sphere centered at the center of mass of the tetrahedron. By calculating the surface areas bounded by the resultant geodesics, baseline probabilities were achieved. Using a 3D printer, dice were constructed of uniform density and the results of rolling them were recorded. After calculating the corresponding confidence intervals, the …


Fractional Brownian Motion With A Reflecting Wall, Alexander H. O. Wada, Thomas Vojta Feb 2018

Fractional Brownian Motion With A Reflecting Wall, Alexander H. O. Wada, Thomas Vojta

Physics Faculty Research & Creative Works

Fractional Brownian motion, a stochastic process with long-time correlations between its increments, is a prototypical model for anomalous diffusion. We analyze fractional Brownian motion in the presence of a reflecting wall by means of Monte Carlo simulations. Whereas the mean-square displacement of the particle shows the expected anomalous diffusion behavior (x2) ~ tα, the interplay between the geometric confinement and the long-time memory leads to a highly non-Gaussian probability density function with a power-law singularity at the barrier. In the superdiffusive case α > 1, the particles accumulate at the barrier leading to a divergence of the …


The Entropic Dynamics Approach To The Paradigmatic Quantum Mechanical Phenomena, Susan Difranzo Jan 2018

The Entropic Dynamics Approach To The Paradigmatic Quantum Mechanical Phenomena, Susan Difranzo

Legacy Theses & Dissertations (2009 - 2024)

Standard Quantum Mechanics, although successful in terms of calculating and predicting


Influence Of Orbital Symmetry On Diffraction Imaging With Rescattering Electron Wave Packets, Michael G. Pullen, Benjamin Wolter, Anh-Thu Le, Matthias Baudisch, Michele Sclafani, Hugo Pires, Claus Dieter Schroeter, Joachim Ullrich, Robert Moshammer, Thomas Pfeifer, C. D. Lin, Jens Biegert Jun 2016

Influence Of Orbital Symmetry On Diffraction Imaging With Rescattering Electron Wave Packets, Michael G. Pullen, Benjamin Wolter, Anh-Thu Le, Matthias Baudisch, Michele Sclafani, Hugo Pires, Claus Dieter Schroeter, Joachim Ullrich, Robert Moshammer, Thomas Pfeifer, C. D. Lin, Jens Biegert

Physics Faculty Research & Creative Works

The ability to directly follow and time-resolve the rearrangement of the nuclei within molecules is a frontier of science that requires atomic spatial and few-femtosecond temporal resolutions. While laser-induced electron diffraction can meet these requirements, it was recently concluded that molecules with particular orbital symmetries (such as πg) cannot be imaged using purely backscattering electron wave packets without molecular alignment. Here, we demonstrate, in direct contradiction to these findings, that the orientation and shape of molecular orbitals presents no impediment for retrieving molecular structure with adequate sampling of the momentum transfer space. We overcome previous issues by showcasing …


Elements Of The Mathematical Formulation Of Quantum Mechanics, Keunjae Go May 2016

Elements Of The Mathematical Formulation Of Quantum Mechanics, Keunjae Go

Senior Honors Papers / Undergraduate Theses

In this paper, we will explore some of the basic elements of the mathematical formulation of quantum mechanics. In the first section, I will list the motivations for introducing a probability model that is quite different from that of the classical probability theory, but still shares quite a few significant commonalities. Later in the paper, I will discuss the quantum probability theory in detail, while paying a brief attention to some of the axioms (by Birkhoff and von Neumann) that illustrate both the commonalities and differences between classical mechanics and quantum mechanics. This paper will end with a presentation of …


The Problem Of Confirmation In The Everett Interpretation, Emily Adlam Apr 2014

The Problem Of Confirmation In The Everett Interpretation, Emily Adlam

Mathematics, Physics, and Computer Science Faculty Articles and Research

I argue that the Oxford school Everett interpretation is internally incoherent, because we cannot claim that in an Everettian universe the kinds of reasoning we have used to arrive at our beliefs about quantum mechanics would lead us to form true beliefs. I show that in an Everettian context, the experimental evidence that we have available could not provide empirical confirmation for quantum mechanics, and moreover that we would not even be able to establish reference to the theoretical entities of quantum mechanics. I then consider a range of existing Everettian approaches to the probability problem and show that they …


Comparison Of Forward And Backward Pp Pair Knockout In 3He(E,E'Pp)N, H. Baghdasaryan, L. B. Weinstein, J. M. Laget, K. P. Adhikari, M. Aghasyan, M. J. Amaryan, M. Anghinolfi, J. Ball, M. Battaglieri, A. S. Biselli, G. Dodge, C. E. Hyde, S. E. Kuhn, H. Seraydaryan Jan 2012

Comparison Of Forward And Backward Pp Pair Knockout In 3He(E,E'Pp)N, H. Baghdasaryan, L. B. Weinstein, J. M. Laget, K. P. Adhikari, M. Aghasyan, M. J. Amaryan, M. Anghinolfi, J. Ball, M. Battaglieri, A. S. Biselli, G. Dodge, C. E. Hyde, S. E. Kuhn, H. Seraydaryan

Physics Faculty Publications

Measuring nucleon-nucleon short range correlations (SRCs) has been a goal of the nuclear physics community for many years. They are an important part of the nuclear wave function, accounting for almost all of the high-momentum strength. They are closely related to the EMC effect. While their overall probability has been measured, measuring their momentum distributions is more difficult. In order to determine the best configuration for studying SRC momentum distributions, we measured the 3He(e,e'pp)n reaction, looking at events with high-momentum protons (pp > 0.35 GeV/c) and a low-momentum neutron (p …


Exact Solutions For Social And Biological Contagion Models On Mixed Directed And Undirected, Degree-Correlated Random Networks, Joshua L. Payne, Kameron Decker Harris, Peter Sheridan Dodds Jun 2011

Exact Solutions For Social And Biological Contagion Models On Mixed Directed And Undirected, Degree-Correlated Random Networks, Joshua L. Payne, Kameron Decker Harris, Peter Sheridan Dodds

Dartmouth Scholarship

We derive analytic expressions for the possibility, probability, and expected size of global spread- ing events starting from a single infected seed for a broad collection of contagion processes acting on random networks with both directed and undirected edges and arbitrary degree-degree correla- tions. Our work extends previous theoretical developments for the undirected case, and we provide numerical support for our findings by investigating an example class of networks for which we are able to obtain closed-form expressions.


Scattering Matrix Elements For The Nonadiabatic Collision B (2PJ) + H2 (1Σ+G, Ν, Ј) ↔ B (2PJ’) + H2 (1Σ+G, Ν’, J’)., Luke A. Barger Dec 2010

Scattering Matrix Elements For The Nonadiabatic Collision B (2PJₐ) + H2 (1Σ+G, Ν, Ј) ↔ B (2PJ’ₐ) + H2 (1Σ+G, Ν’, J’)., Luke A. Barger

Theses and Dissertations

Scattering matrix elements are calculated for the nonadiabatic inelastic collision B (2Pj) + H2 (1Σ+g, ν, ј) ↔ B (2Pj’) + H2 (1Σ+g, ν’, j’). This calculation utilizes the effective potential energy surfaces for this collision generated by Garvin along with a correction to the asymptotic H2 potential. Wavepackets are propagated on these surfaces using a split-operator propagator. This propagation yields correlation functions between reactant and product Møller states which are used to calculate the scattering …


Bremsstrahlung In Α Decay Reexamined, H. Boie, Heiko Scheit, Ulrich D. Jentschura, F. Kock, M. Lauer, A. I. Milstein, Ivan S. Terekhov, Dirk Schwalm Jul 2007

Bremsstrahlung In Α Decay Reexamined, H. Boie, Heiko Scheit, Ulrich D. Jentschura, F. Kock, M. Lauer, A. I. Milstein, Ivan S. Terekhov, Dirk Schwalm

Physics Faculty Research & Creative Works

A high-statistics measurement of bremsstrahlung emitted in the α decay of 210Po has been performed, which allows us to follow the photon spectra up to energies of ~500keV. The measured differential emission probability is in good agreement with our theoretical results obtained within the quasiclassical approximation as well as with the exact quantum mechanical calculation. It is shown that, due to the small effective electric dipole charge of the radiating system, a significant interference between the electric dipole and quadrupole contributions occurs, which is altering substantially the angular correlation between the α particle and the emitted photon.


Breakup Of H₂ In Singly Ionizing Collisions With Fast Protons: Channel-Selective Low-Energy Electron Spectra, Christina Dimopoulou, Robert Moshammer, Daniel Fischer, C. Hohr, Alexander Dorn, Pablo Daniel Fainstein, Jose R. Crespo Lopez-Urrutia, Claus Dieter Schroter, Holger Kollmus, Rido Mann, Siegbert Hagmann, Joachim Hermann Ullrich Sep 2004

Breakup Of H₂ In Singly Ionizing Collisions With Fast Protons: Channel-Selective Low-Energy Electron Spectra, Christina Dimopoulou, Robert Moshammer, Daniel Fischer, C. Hohr, Alexander Dorn, Pablo Daniel Fainstein, Jose R. Crespo Lopez-Urrutia, Claus Dieter Schroter, Holger Kollmus, Rido Mann, Siegbert Hagmann, Joachim Hermann Ullrich

Physics Faculty Research & Creative Works

The dissociation of H2 in singly ionizing collisions with fast protons was analyzed using channel-selective low-energy electron spectra. Dissociative and nondissociative single ionization of H2 by 6MeV proton impact was described in a kinematically by determining momentum vectors of electron and H+ fragment of H2+ target ion, respectively. The electron spectra exhibited role of autoionization of doubly and singly excited states of H2. The doubly and singly excited states of H2 involve coupling between electronic and nuclear motion of molecule.


High-Latitude Propagation Studies Using A Meridional Chain Of Lf/Mf/Hf Receivers, J Labelle Apr 2004

High-Latitude Propagation Studies Using A Meridional Chain Of Lf/Mf/Hf Receivers, J Labelle

Dartmouth Scholarship

For over a decade, Dartmouth College has oper- ated programmable radio receivers at multiple high-latitude sites covering the frequency range 100–5000 kHz with about a 1-s resolution. Besides detecting radio emissions of auro- ral origin, these receivers record characteristics of the iono- spheric propagation of natural and man-made signals, docu- menting well-known effects, such as the diurnal variation in the propagation characteristics of short and long waves, and also revealing more subtle effects. For example, at auroral zone sites in equinoctial conditions, the amplitudes of dis- tant transmissions on MF/HF frequencies are often enhanced by a few dB just before …


A Study Of Pc-5 Ulf Oscillations, M K. Hudson, R E. Denton, M R. Lessard, E G. Miftakhova, R R. Anderson Jan 2004

A Study Of Pc-5 Ulf Oscillations, M K. Hudson, R E. Denton, M R. Lessard, E G. Miftakhova, R R. Anderson

Dartmouth Scholarship

A study of Pc-5 magnetic pulsations using data from the Combined Release and Radiation Effects Satellite (CRRES) was carried out. Three-component dynamic mag- netic field spectrograms have been used to survey ULF pul- sation activity for the approximate fourteen month lifetime of CRRES. Two-hour panels of dynamic spectra were exam- ined to find events which fall into two basic categories: 1) toroidal modes (fundamental and harmonic resonances) and 2) poloidal modes, which include compressional oscillations. The occurence rates were determined as a function of L value and local time. The main result is a comparable probabil- ity of occurence of …


Doubly Differential Electron-Emission Spectra In Single And Multiple Ionization Of Noble-Gas Atoms By Fast Highly-Charged-Ion Impact, Tom Kirchner, Laszlo Gulyas, Robert Moshammer, Michael Schulz, Joachim Hermann Ullrich Apr 2002

Doubly Differential Electron-Emission Spectra In Single And Multiple Ionization Of Noble-Gas Atoms By Fast Highly-Charged-Ion Impact, Tom Kirchner, Laszlo Gulyas, Robert Moshammer, Michael Schulz, Joachim Hermann Ullrich

Physics Faculty Research & Creative Works

Low-energy electron emission spectra are studied in collisions of 3.6 MeV/amu Au53+ ions with neon and argon atoms for well-defined degrees of target ionization. We calculate doubly differential cross sections as functions of the recoil-ion charge state in the continuum-distorted-wave with eikonal initial-state approximation using a binomial analysis of the total and differential ionization probabilities, and compare them with the present and with previously published experimental data. Very good agreement is found for the single-ionization spectra and for double ionization of neon, while some discrepancies are observed in the spectra for double and triple ionization of argon.


Known Source Detection Predictions For Higher Order Correlators, Lisa A. Pflug, George E. Ioup, Juliette W. Ioup May 1998

Known Source Detection Predictions For Higher Order Correlators, Lisa A. Pflug, George E. Ioup, Juliette W. Ioup

Physics Faculty Publications

The problem addressed in this paper is whether higher order correlation detectors can perform better in white noise than the cross correlation detector for the detection of a known transient source signal, if additional receiver information is included in the higher order correlations. While the cross correlation is the optimal linear detector for white noise, additional receiver information in the higher order correlations makes them nonlinear. In this paper, formulas that predict the performance of higher order correlation detectors of energy signals are derived for a known source signal. Given the first through fourth order signal moments and the noise …


Chaotic Behavior And Damage Spreading In The Glauber Ising Model: A Master Equation Approach, Thomas Vojta May 1997

Chaotic Behavior And Damage Spreading In The Glauber Ising Model: A Master Equation Approach, Thomas Vojta

Physics Faculty Research & Creative Works

We investigate the sensitivity of the time evolution of a kinetic Ising model with Glauber dynamics against the initial conditions. To do so we apply the "damage spreading" method, i.e., we study the simultaneous evolution of two identical systems subjected to the same thermal noise. We derive a master equation for the joint probability distribution of the two systems. We then solve this master equation within an effective-field approximation which goes beyond the usual mean-field approximation by retaining the fluctuations though in a quite simplistic manner. The resulting effective-field theory is applied to different physical situations. It is used to …


Landau-Zener Treatment Of Intensity-Tuned Multiphoton Resonances Of Potassium, J. Greg Story, D. I. Duncan, Thomas F. Gallagher Aug 1994

Landau-Zener Treatment Of Intensity-Tuned Multiphoton Resonances Of Potassium, J. Greg Story, D. I. Duncan, Thomas F. Gallagher

Physics Faculty Research & Creative Works

When exposed to intense light of ~580 nm, the ground state of K shifts up in energy, passing through two photon resonances with Rydberg states, and finally crossing the two-photon ionization limit. We have used laser pulses of varying duration to study the nature of the population transfer from the ground state to the excited state due to the intensity-tuned resonances encountered during the rising edge of the pulse. A dynamic Floquet approach in which the resonances are treated as avoided crossings of the Floquet energy levels is used to model the population transfer and gives excellent agreement with the …