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Full-Text Articles in Physics
Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost
Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost
All Dissertations
In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …
Tardys Quantifiers: Extracting Temporal And Reversible Dynamical Symmetries, Nhat Vu Minh Nguyen, Arjendu K. Pattanayak, Andres Aragoneses
Tardys Quantifiers: Extracting Temporal And Reversible Dynamical Symmetries, Nhat Vu Minh Nguyen, Arjendu K. Pattanayak, Andres Aragoneses
2023 Symposium
One of the great challenges in complex and chaotic dynamics is to reveal the details of its underlying determinism. This can be manifest in the form of temporal correlations or structured patterns in the dynamics of a measurable variable. These temporal dynamical structures are sometimes a consequence of hidden global symmetries. Here we identify the temporal (approximate) symmetries of a semiconductor laser with external optical feedback, based on which we define the Temporal And Reversible DYnamical Symmetry (TARDYS) quantifiers to evaluate the relevance of specific temporal correlations in a time series. We show that these symmetries are also present in …
Measuring And Modeling Information Flow On Social Networks, Tyson Charles Pond
Measuring And Modeling Information Flow On Social Networks, Tyson Charles Pond
Graduate College Dissertations and Theses
With the rise of social media, researchers have become increasingly interested in understanding how individuals inform, influence, and interact with others in their social network and how the network mediates the flow of information. Previous research on information flow has primarily used models of contagion to study the adoption of a technology, propagation of purchase recommendations, or virality of online activity. Social (or "complex") contagions spread differently than biological ("simple") contagions. A limitation when researchers validate contagion models is that they neglect much of the massive amounts of data now available through online social networks. Here we model a recently …
Exact Solutions For Social And Biological Contagion Models On Mixed Directed And Undirected, Degree-Correlated Random Networks, Joshua L. Payne, Kameron Decker Harris, Peter Sheridan Dodds
Exact Solutions For Social And Biological Contagion Models On Mixed Directed And Undirected, Degree-Correlated Random Networks, Joshua L. Payne, Kameron Decker Harris, Peter Sheridan Dodds
Dartmouth Scholarship
We derive analytic expressions for the possibility, probability, and expected size of global spread- ing events starting from a single infected seed for a broad collection of contagion processes acting on random networks with both directed and undirected edges and arbitrary degree-degree correla- tions. Our work extends previous theoretical developments for the undirected case, and we provide numerical support for our findings by investigating an example class of networks for which we are able to obtain closed-form expressions.
High-Latitude Propagation Studies Using A Meridional Chain Of Lf/Mf/Hf Receivers, J Labelle
High-Latitude Propagation Studies Using A Meridional Chain Of Lf/Mf/Hf Receivers, J Labelle
Dartmouth Scholarship
For over a decade, Dartmouth College has oper- ated programmable radio receivers at multiple high-latitude sites covering the frequency range 100–5000 kHz with about a 1-s resolution. Besides detecting radio emissions of auro- ral origin, these receivers record characteristics of the iono- spheric propagation of natural and man-made signals, docu- menting well-known effects, such as the diurnal variation in the propagation characteristics of short and long waves, and also revealing more subtle effects. For example, at auroral zone sites in equinoctial conditions, the amplitudes of dis- tant transmissions on MF/HF frequencies are often enhanced by a few dB just before …