Physics Commons^™

Spectralomics – Towards A Holistic Adaptation Of Label Free Spectroscopy, Hugh Byrne

Articles

Vibrational spectroscopy, largely based on infrared absorption and Raman scattering techniques, is much vaunted as a label free approach, delivering a high content, holistic characterisation of a sample, with demonstrable applications in a broad range of fields, from process analytical technologies and preclinical drug screening, to disease diagnostics, therapeutics, prognostics and personalised medicine. However, in the analysis of such complex systems, a trend has emerged in which spectral analysis is reduced to the identification of individual peaks, based on reference tables of assignments derived from literature, which are then interpreted as biomarkers. More sophisticated analysis attempts to unmix the spectrum …

Accelerating Markov Chain Monte Carlo Sampling With Diffusion Models, N. T. Hunt-Smith, W. Melnitchouk, F. Ringer, N. Sato, A. W. Thomas, M. J. White

Physics Faculty Publications

Global fits of physics models require efficient methods for exploring high-dimensional and/or multimodal posterior functions. We introduce a novel method for accelerating Markov Chain Monte Carlo (MCMC) sampling by pairing a Metropolis-Hastings algorithm with a diffusion model that can draw global samples with the aim of approximating the posterior. We briefly review diffusion models in the context of image synthesis before providing a streamlined diffusion model tailored towards low-dimensional data arrays. We then present our adapted Metropolis-Hastings algorithm which combines local proposals with global proposals taken from a diffusion model that is regularly trained on the samples produced during the …

Syllabus For Computational Physics (Phys 39907), Mark D. Shattuck

Open Educational Resources

Syllabus for City College of New York Computational Physics course.

Enhanced Quantum Chemistry With Machine Learning, Brock Dyer

Physics and Astronomy Summer Fellows

This file is a catalogue of the relevant quantum mechanical and computer programming topics that I learned during the summer which will be helping me to generate an artificial intelligence that will be able to perform computational chemical calculations at a much faster rate and comparable or better accuracy than current methods.

Human And Technical Factors In The Adoption Of Quantum Cryptographic Algorithms, Alyssa Pinkston

Mathematical Sciences Technical Reports (MSTR)

The purpose of this research is to understand what factors would cause users to choose quantum key distribution (QKD) over other methods of cryptography. An Advanced Encryption Standard (AES) key can be exchanged through communication using the Rivest, Shamir, Adleman (RSA) cryptographic algorithm, QKD, or post-quantum cryptography (PQC). QKD relies on quantum physics where RSA and PQC use complex mathematics to encrypt data. The BB84 quantum cryptographic protocol involves communication over a quantum channel and a public channel. The quantum channel can be technically attacked by beamsplitting or intercept/resend. QKD, like other forms of cryptography, is vulnerable to social attacks …

Volume 14, Ireland Seagle, Dalton C. Whitby, Cassandra Poole, Rachel Cannon, Heidi Parker-Combes, Devon G. Shifflett, Antonio Harvey

Incite: The Journal of Undergraduate Scholarship

Table of Contents:

• Introduction: Dr. Amorette Barber
• From the Editor: Dr. Larissa "Kat" Tracy
• From the Designers: Rachel English, Rachel Hanson
• Hungry Like the Wolf: The Wolf as Metaphor in Paramount Network’s Yellowstone: Ireland Seagle
• “Floating Cities”: Illustrating the Commercial and Conservation Conflict of Alaskan Cruise Ship Tourism: Dalton C. Whitby
• What Can You Do When Your Genes are the Enemy? Current Applications of Gene Manipulation and the Associated Ethical Considerations: Cassandra Poole
• La doble cara: un tema romántico en las obras de Larra y Hawthorne: Rachel Cannon
• Resolving a Conflict: How to …

Applying Hallgren’S Algorithm For Solving Pell’S Equation To Finding The Irrational Slope Of The Launch Of A Billiard Ball, Sangheon Choi

Mathematical Sciences Technical Reports (MSTR)

This thesis is an exploration of Quantum Computing applied to Pell’s equation in an attempt to find solutions to the Billiard Ball Problem. Pell’s equation is a Diophantine equation in the form of x² − ny² = 1, where n is a given positive nonsquare integer, and integer solutions are sought for x and y. We will be applying Hallgren’s algorithm for finding irrational periods in functions, in the context of billiard balls and their movement on a friction-less unit square billiard table. Our central research question has been the following: Given the cutting sequence of the billiard …

Phys 275: Intro To Scientific Computing, David Goldberg

Open Educational Resources

No abstract provided.

Quantum Computing For Nuclear Physics, Aikaterini Nikou

2023 REYES Proceedings

Nuclear physics can greatly advance by taking advantage of quantum computing. Quantum computing can play a pivotal role in advancing nuclear physics and can allow for the description of physical situations and problems that are prohibitive to solve using classical computing due to their complexity. Some of the problems whose complexity requires using quantum computing to describe are: interacting quantum many-body and Quantum Field Theory problems such as simulating strongly interacting fields such as Quantum Chromodynamics with physical time evolution, the determination of the shape/phase of a nucleus using the time evolution of an appropriated observable as well as identifying …

Patch-Wise Training With Convolutional Neural Networks To Synthetically Upscale Cfd Simulations, John P. Romano, Alec C. Brodeur, Oktay Baysal

Mechanical & Aerospace Engineering Faculty Publications

This paper expands the authors’ prior work[1], which focuses on developing a convolutional neural network (CNN) model capable of mapping time-averaged, unsteady Reynold’s-averaged Navier-Stokes (URANS) simulations to higher resolution results informed by time-averaged detached eddy simulations (DES). The authors present improvements over the prior CNN autoencoder model that result from hyperparameter optimization, increased data set augmentation through the adoption of a patch-wise training approach, and the predictions of primitive variables rather than vorticity magnitude. The training of the CNN model developed in this study uses the same URANS and DES simulations of a transonic flow around several NACA 4-digit airfoils …

The Effect Of The Width Of The Incident Pulse To The Dielectric Transition Layer In The Scattering Of An Electromagnetic Pulse — A Qubit Lattice Algorithm Simulation, George Vahala, Linda Vahala, Abhay K. Ram, Min Soe

Electrical & Computer Engineering Faculty Publications

The effect of the thickness of the dielectric boundary layer that connects a material of refractive index n₁ to another of index n₂is considered for the propagation of an electromagnetic pulse. A qubit lattice algorithm (QLA), which consists of a specially chosen non-commuting sequence of collision and streaming operators acting on a basis set of qubits, is theoretically determined that recovers the Maxwell equations to second-order in a small parameter ϵ. For very thin boundary layer the scattering properties of the pulse mimics that found from the Fresnel jump conditions for a plane wave - except that …

Machine-Assisted Discovery Of Integrable Symplectic Mappings, T. Zolkin, Y. Kharkov, S. Nagaitsev

Physics Faculty Publications

We present a new automated method for finding integrable symplectic maps of the plane. These dynamical systems possess a hidden symmetry associated with an existence of conserved quantities, i.e., integrals of motion. The core idea of the algorithm is based on the knowledge that the evolution of an integrable system in the phase space is restricted to a lower-dimensional submanifold. Limiting ourselves to polygon invariants of motion, we analyze the shape of individual trajectories thus successfully distinguishing integrable motion from chaotic cases. For example, our method rediscovers some of the famous McMillan-Suris integrable mappings and ultradiscrete Painlevé equations. In total, …

Machine Learning-Based Jet And Event Classification At The Electron-Ion Collider With Applications To Hadron Structure And Spin Physics, Kyle Lee, James Mulligan, Mateusz Płoskoń, Felix Ringer, Feng Yuan

Physics Faculty Publications

We explore machine learning-based jet and event identification at the future Electron-Ion Collider (EIC). We study the effectiveness of machine learning-based classifiers at relatively low EIC energies, focusing on (i) identifying the flavor of the jet and (ii) identifying the underlying hard process of the event. We propose applications of our machine learning-based jet identification in the key research areas at the future EIC and current Relativistic Heavy Ion Collider program, including enhancing constraints on (transverse momentum dependent) parton distribution functions, improving experimental access to transverse spin asymmetries, studying photon structure, and quantifying the modification of hadrons and jets in …

Nudyclr: Nuclear Dynamic Co-Learned Representations, Víctor Samuel Pérez-Díaz

2023 REYES Proceedings

NuCLR (Nuclear Co-Learned Representations) is a cutting-edge multi-task deep learning framework designed to predict essential nuclear observables, including binding energies, decay energies, and nuclear charge radii. As part of the REYES Mentorship Program, we investigated the application of dynamic loss weighting to further refine NuCLR’s predictive performance. Our findings indicate that while weighting strategies can enhance accuracy in specific tasks, such as binding energy prediction, they may underperform in others. Equal Weighting (EW), the original method employed by NuCLR, demonstrated consistent performance across multiple tasks, affirming its robustness. This report succinctly presents the developments and results of the mentorship program …

Toward A Generative Modeling Analysis Of Clas Exclusive 2𝜋 Photoproduction, T. Alghamdi, Y. Alanazi, M. Battaglieri, Ł. Bibrzycki, A. V. Golda, A. N. Hiller Blin, E. L. Isupov, Y. Li, L. Marsicano, W. Melnitchouk, V. I. Mokeev, G. Montaña, A. Pilloni, N. Sato, A. P. Szczepaniak, T. Vittorini

Computer Science Faculty Publications

AI-supported algorithms, particularly generative models, have been successfully used in a variety of different contexts. This work employs a generative modeling approach to unfold detector effects specifically tailored for exclusive reactions that involve multiparticle final states. Our study demonstrates the preservation of correlations between kinematic variables in a multidimensional phase space. We perform a full closure test on two-pion photoproduction pseudodata generated with a realistic model in the kinematics of the Jefferson Lab CLAS g11 experiment. The overlap of different reaction mechanisms leading to the same final state associated with the CLAS detector’s nontrivial effects represents an ideal test case …

Charged Track Reconstruction With Artificial Intelligence For Clas12, Gagik Gavalian, Polykarpos Thomadakis, Angelos Angelopoulos, Nikos Chrisochoides

Computer Science Faculty Publications

In this paper, we present the results of charged particle track reconstruction in CLAS12 using artificial intelligence. In our approach, we use neural networks working together to identify tracks based on the raw signals in the Drift Chambers. A Convolutional Auto-Encoder is used to de-noise raw data by removing the hits that do not satisfy the patterns for tracks, and second Multi-Layer Perceptron is used to identify tracks from combinations of clusters in the drift chambers. Our method increases the tracking efficiency by 50% for multi-particle final states already conducted experiments. The de-noising results indicate that future experiments can run …

The Mceliece Cryptosystem As A Solution To The Post-Quantum Cryptographic Problem, Isaac Hanna

Senior Honors Theses

The ability to communicate securely across the internet is owing to the security of the RSA cryptosystem, among others. This cryptosystem relies on the difficulty of integer factorization to provide secure communication. Peter Shor’s quantum integer factorization algorithm threatens to upend this. A special case of the hidden subgroup problem, the algorithm provides an exponential speedup in the integer factorization problem, destroying RSA’s security. Robert McEliece’s cryptosystem has been proposed as an alternative. Based upon binary Goppa codes instead of integer factorization, his cryptosystem uses code scrambling and error introduction to hinder decrypting a message without the private key. This …

Plasmon Damping Rates In Coulomb-Coupled 2d Layers In A Heterostructure, Dipendra Dahal, Godfrey Gumbs, Andrii Iurov, Chin-Sen Ting

Publications and Research

The Coulomb excitations of charge density oscillation are calculated for a double-layer heterostructure. Specifically, we consider two-dimensional (2D) layers of silicene and graphene on a substrate. From the obtained surface response function, we calculated the plasmon dispersion relations, which demonstrate how the Coulomb interaction renormalizes the plasmon frequencies. Most importantly, we have conducted a thorough investigation of how the decay rates of the plasmons in these heterostructures are affected by the Coulomb coupling between different types of two- dimensional materials whose separations could be varied. A novel effect of nullification of the silicene band gap is noticed when graphene is …

Reducing Leakage Current And Enhancing Polarization In Multiferroic 3d Supernanocomposites By Microstructure Engineering, Erik Enriquez, Ping Lu, Leigang Li, Bruce Zhang, Haiyan Wang, Quanxi Jia, Aiping Chen

Computer Science Faculty Publications and Presentations

Multiferroic materials have generated great interest due to their potential as functional device materials. Nanocomposites have been increasingly used to design and generate new functionalities by pairing dissimilar ferroic materials, though the combination often introduces new complexity and challenges unforeseeable in single-phase counterparts. The recently developed approaches to fabricate 3D super-nanocomposites (3D‐sNC) open new avenues to control and enhance functional properties. In this work, we develop a new 3D‐sNC with CoFe2O4 (CFO) short nanopillar arrays embedded in BaTiO3 (BTO) film matrix via microstructure engineering by alternatively depositing BTO:CFO vertically-aligned nanocomposite layers and single-phase BTO layers. This microstructure engineering method allows …

Hhl Algorithm On The Honeywell H1 Quantum Computer, Adrik B. Herbert, Eric A. F. Reinhardt

Discovery Undergraduate Interdisciplinary Research Internship

The quantum algorithm for linear systems of equations (HHL algorithm) provides an efficient tool for finding solutions to systems of functions with a large number of variables and low sensitivity to changes in inputs (i.e. low error rates). For complex problems, such as matrix inversion, HHL requires exponentially less computational time as compared with classical computation methods. HHL can be adapted to current quantum computing systems with limited numbers of qubits (quantum computation bits) but a high reusability rate such as the Honeywell H1 quantum computer. Some methods for improving HHL have been proposed through the combination of quantum and …

Unconventional Computation Including Quantum Computation, Bruce J. Maclennan

Faculty Publications and Other Works -- EECS

Unconventional computation (or non-standard computation) refers to the use of non-traditional technologies and computing paradigms. As we approach the limits of Moore’s Law, progress in computation will depend on going beyond binary electronics and on exploring new paradigms and technologies for information processing and control. This book surveys some topics relevant to unconventional computation, including the definition of unconventional computations, the physics of computation, quantum computation, DNA and molecular computation, and analog computation. This book is the content of a course taught at UTK.

Volume 13, Payton Davenport, Audrey Lemons, Jacob Shope, Haley Smith, Cassandra Poole, Rachel Cannon, Rachel Boch, Suzanne Stetson

Incite: The Journal of Undergraduate Scholarship

Introduction Dr. Roger A. Byrne, Dean

From the Editor Dr. Larissa “Kat” Tracy

From the Designers Rachel English, Rachel Hanson

The Effect of Compliment Type on the Estimated Value of the Compliment by Payton Davenport, Audrey Lemons, and Jacob Shope

The Imperial Japanese Military: A New Identity in the Twentieth Century, 1853–1922 by Haley Smith

Longwood University’s campus: Human-cultivated Soil has Higher Microbial Diversity than Soil Collected from Wild Sites by Cassandra Poole

Reminiscent Modernism: Poetry Magazine’s Modernist Nostalgia for the Past by Rachel Cannon

Challenges Faced by Healthcare Workers During the COVID-19 Pandemic: A Preliminary Study of Age and …

A Super Fast Algorithm For Estimating Sample Entropy, Weifeng Liu, Ying Jiang, Yuesheng Xu

Mathematics & Statistics Faculty Publications

: Sample entropy, an approximation of the Kolmogorov entropy, was proposed to characterize complexity of a time series, which is essentially defined as − log(B/A), where B denotes the number of matched template pairs with length m and A denotes the number of matched template pairs with m + 1, for a predetermined positive integer m. It has been widely used to analyze physiological signals. As computing sample entropy is time consuming, the box-assisted, bucket-assisted, x-sort, assisted sliding box, and kd-tree-based algorithms were proposed to accelerate its computation. These algorithms require O(N²) or …

Three Wave Mixing In Epsilon-Near-Zero Plasmonic Waveguides For Signal Regeneration, Nicholas Mirchandani, Mark C. Harrison

Engineering Faculty Articles and Research

Vast improvements in communications technology are possible if the conversion of digital information from optical to electric and back can be removed. Plasmonic devices offer one solution due to optical computing’s potential for increased bandwidth, which would enable increased throughput and enhanced security. Plasmonic devices have small footprints and interface with electronics easily, but these potential improvements are offset by the large device footprints of conventional signal regeneration schemes, since surface plasmon polaritons (SPPs) are incredibly lossy. As such, there is a need for novel regeneration schemes. The continuous, uniform, and unambiguous digital information encoding method is phase-shift-keying (PSK), so …

Why Ideas First Appear In Informal Form? Why It Is Very Difficult To Know Yourself? Fuzzy-Based Explanation, Miroslav Svitek, Vladik Kreinovich

Departmental Technical Reports (CS)

To a lay person reading about history of physics, it may sound as if the progress of physics comes from geniuses whose inspiration leads them to precise equations that -- almost magically -- explain all the data: this is what Newton did with mechanics, this is what Schroedinger did with quantum physics, this is what Einstein did with gravitation. However, a deeper study of history of physics shows that in all these cases, these geniuses did not start from scratch -- they formalized ideas that first appeared in imprecise ("fuzzy") form. In this paper, we explain -- on the qualitative …

A Virtual Physics Laboratory For Remote/Online Learning, Themistoklis Chronis

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

Can Physics Attain Its Goals: Extending D'Agostino's Analysis To 21st Century And Beyond, Olga Kosheleva, Vladik Kreinovich

Departmental Technical Reports (CS)

In his 2000 seminal book, Silvo D'Agostino provided the detailed overview of the history of ideas underlying 19th and 20th century physics. Now that we are two decades into the 21st century, a natural question is: how can we extend his analysis to the 21st century physics -- and, if possible, beyond, to try to predict how physics will change? To perform this analysis, we go beyond an analysis of what happened and focus more on why para-digm changes happened in the history of physics. To better understand these paradigm changes, we analyze now only what were the main ideas …

Development Of Scent Detection And Categorization Algorithm Using Gas Chromatography And Machine Learning, Alex Driehaus

Mahurin Honors College Capstone Experience/Thesis Projects

There are many looking to connect human senses to quantifiable data. Scents are categorized by their descriptions into scent families. These include citrus, floral, and woody. Similar descriptors designate similar families, while different descriptors correlate with different families. Dravnieks compiled an Atlas of chemical descriptors [1]. Such descriptors are cinnamon, fruity, and cadaverous. By analyzing the applicability of these descriptors, the chemicals will be sorted into their scent families.

Gas chromatography generates sample-specific signals of voltage over time. Chromatograms of known scents will serve as a basis for a convolutional neural network. This algorithm will be trained on these signals …

Deep Learning Based Superconducting Radio-Frequency Cavity Fault Classification At Jefferson Laboratory, Lasitha Vidyaratne, Adam Carpenter, Tom Powers, Chris Tennant, Khan M. Iftekharuddin, Md. Monibor Rahman, Anna S. Shabalina

Electrical & Computer Engineering Faculty Publications

This work investigates the efficacy of deep learning (DL) for classifying C100 superconducting radio-frequency (SRF) cavity faults in the Continuous Electron Beam Accelerator Facility (CEBAF) at Jefferson Lab. CEBAF is a large, high-power continuous wave recirculating linac that utilizes 418 SRF cavities to accelerate electrons up to 12 GeV. Recent upgrades to CEBAF include installation of 11 new cryomodules (88 cavities) equipped with a low-level RF system that records RF time-series data from each cavity at the onset of an RF failure. Typically, subject matter experts (SME) analyze this data to determine the fault type and identify the cavity of …

Machine Learning-Based Event Generator For Electron-Proton Scattering, Y. Alanazi, P. Ambrozewicz, M. Battaglieri, A.N. Hiller Blin, M. P. Kuchera, Y. Li, T. Liu, R. E. Mcclellan, W. Melnitchouk, E. Pritchard, M. Robertson, N. Sato, R. Strauss, L. Velasco

Computer Science Faculty Publications

We present a new machine learning-based Monte Carlo event generator using generative adversarial networks (GANs) that can be trained with calibrated detector simulations to construct a vertex-level event generator free of theoretical assumptions about femtometer scale physics. Our framework includes a GAN-based detector folding as a fast-surrogate model that mimics detector simulators. The framework is tested and validated on simulated inclusive deep-inelastic scattering data along with existing parametrizations for detector simulation, with uncertainty quantification based on a statistical bootstrapping technique. Our results provide for the first time a realistic proof of concept to mitigate theory bias in inferring vertex-level event …