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Articles 1 - 30 of 34
Full-Text Articles in Oceanography
On The Movement Of Beluga Whales In Cook Inlet, Alaska: Simulations Of Tidal And Environmental Impacts Using A Hydrodynamic Inundation Model, Tal Ezer, Roderick Hobbs, Lie-Yauw Oey
On The Movement Of Beluga Whales In Cook Inlet, Alaska: Simulations Of Tidal And Environmental Impacts Using A Hydrodynamic Inundation Model, Tal Ezer, Roderick Hobbs, Lie-Yauw Oey
CCPO Publications
The population of beluga whales in Cook Inlet, Alaska, is in decline, and since 2000 these whales have been under consideration for designation as "endangered" under the Endangered Species Act (and were placed on the list in October 2008, just before this article went to press). In order to study environmental and hydrodynamic impacts on the belugas' movements and survival in the unique habitat of the inlet, a three-dimensional ocean circulation and inundation model is combined with satellite-tracked beluga whale data. Model-wale data comparisons from two whale paths during a five-day period (september 17-21, 2000) covering 10 tidal cycles suggest …
An Assessment Of Alternative Feed Ingredients In Practical Diets For Florida Pompano (Trachinotus Carolinus) Held In Low Salinity Recirculating Systems, Terhea Nichole Williams
An Assessment Of Alternative Feed Ingredients In Practical Diets For Florida Pompano (Trachinotus Carolinus) Held In Low Salinity Recirculating Systems, Terhea Nichole Williams
Electronic Theses and Dissertations
The identification of alternative protein sources for partial or whole replacement of fishmeal (FM) is a priority in the development of suitable, low cost feed formulations for the Florida pompano (Trachinotus carolinus). To evaluate alternative feed ingredients for the potential replacement of FM in diets fed to juvenile pompano, a series of four experiments were conducted. The objectives of Experiments 1 and 2 were to determine the apparent digestibility of crude protein (ADCP), energy (ADE), and apparent amino acid availability (AAAA) of three plant based ingredients (soybean meal (SBM), soy protein isolate (SPI), corn gluten meal (CGM)) and three by-product …
Fall 2008, Nsu Oceanographic Center
Spatial Analyses And Repletion Of Gargathy Coastal Lagoon, Loreto Herraiz Gomez
Spatial Analyses And Repletion Of Gargathy Coastal Lagoon, Loreto Herraiz Gomez
OES Theses and Dissertations
Coastal lagoons and bays vary in shape and size in response to antecedent topography, geologic processes and sea level rise. Variations in shape and environmental conditions of coastal basins are believed to influence the distribution of benthic sub-environments and the exchange of water with the ocean and other adjacent coastal systems. Gargathy Inlet and its coastal lagoon vary spatially from the inlet, where the greatest depths are observed, to the mainland, dominated by shallow intertidal areas, colonized by marsh. Hypsographic and hydro-hypsographic analyses of Gargathy's coastal lagoon were the primary techniques applied to understand the relative distribution of the benthic …
Summer 2008, Nsu Oceanographic Center
Time Post-Hatch Caloric Value Of Artemia Salina, Jessie M. Sanders
Time Post-Hatch Caloric Value Of Artemia Salina, Jessie M. Sanders
Senior Honors Projects
In aquatic animal collections, such as those in the collection of Mystic Aquarium & Institute for Exploration’s Fish & Invertebrate department, live food is an essential part of the diet of animals that are on display, used in education, and kept in reserve for exhibits. For Mystic Aquarium’s Fish & Invertebrate department, newly hatched Artemia salina, or brine shrimp, are fed to an assortment of fishes and invertebrates, including soft corals and jellyfish. Hatch brine is an important source of fatty acids, which are essential for proper growth and development. Hatch brine starts encapsulated in a cyst form and are …
Spring 2008, Nsu Oceanographic Center
Shading Facilitates Sessile Invertebrate Dominance In The Rocky Subtidal Gulf Of Maine, Ron J. Etter, Robert J. Miller
Shading Facilitates Sessile Invertebrate Dominance In The Rocky Subtidal Gulf Of Maine, Ron J. Etter, Robert J. Miller
Biology Faculty Publication Series
Dramatic shifts in community composition occur between vertical and horizontal rocky surfaces in subtidal environments worldwide, yet the forces mediating this transition are poorly understood. Vertical rock walls are often covered by lush, diverse communities of sessile suspension-feeding invertebrates, while adjacent horizontal substrates are dominated by algae, or corals in the tropics. Multiple factors, including light, sedimentation, water flow, and predation have been proposed to explain this pattern, but experimental tests of these hypotheses are lacking. We manipulated light level and predation to test whether variation in these mechanisms could be responsible for the shift in composition of sessile communities …
Winter 2008, Nsu Oceanographic Center
Shading Facilitates Sessile Invertebrate Dominance In The Rocky Subtidal Gulf Of Maine, Ron J. Etter, Robert J. Miller
Shading Facilitates Sessile Invertebrate Dominance In The Rocky Subtidal Gulf Of Maine, Ron J. Etter, Robert J. Miller
Ron Etter
Dramatic shifts in community composition occur between vertical and horizontal rocky surfaces in subtidal environments worldwide, yet the forces mediating this transition are poorly understood. Vertical rock walls are often covered by lush, diverse communities of sessile suspension-feeding invertebrates, while adjacent horizontal substrates are dominated by algae, or corals in the tropics. Multiple factors, including light, sedimentation, water flow, and predation have been proposed to explain this pattern, but experimental tests of these hypotheses are lacking. We manipulated light level and predation to test whether variation in these mechanisms could be responsible for the shift in composition of sessile communities …
A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer
A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer
CCPO Publications
We used a stochastic Lagrangian model to study how behaviour contributes to copepod grazing success. The model simulates distinct foraging behaviours of Clausocalanus furcatus, Paracalanus aculeatus, and Oithona plumifera. Three sets of simulations were performed to investigate the effects of (a) prey-size preference; (b) variation in prey-size spectra; and (c) turbulence intensity on these species’ grazing rates. The size preference simulations demonstrate that, compared with copepodites, mature females have cell ingestion rates that are an order of magnitude lower, while carbon uptake is reduced by 35%. A prey spectrum that is skewed towards cells ,<6 >μm promotes copepodite …
A Molecular Analysis Of Atlantic Menhaden (Brevoortia Tyrannus) Stock Structure, Abigail J. Lynch
A Molecular Analysis Of Atlantic Menhaden (Brevoortia Tyrannus) Stock Structure, Abigail J. Lynch
Dissertations, Theses, and Masters Projects
Atlantic menhaden is an ecologically and economically important species along the U.S. east coast. As a filter-feeder and key prey fish, it provides a critical link between primary production, phytoplankton, and larger piscivorous predators, such as striped bass, bluefish, and weakfish. The species is also the target of one of the largest commercial fisheries in the country. Menhaden are assessed as a single, coastwide stock, and recent assessments indicate that it is not overfished. However, there is very limited population genetics data to support the assumption of a single stock. Additionally, the recent consolidation of the fishery and localization of …
The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju
The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju
OES Faculty Publications
The heterogeneous mixture of metabolic by-products termed lipofuscin (LF) or age pigments has long been known to accumulate in post mitotic cells with increasing age. In crustaceans several approaches have been developed over the years to track LF accumulation and provide a proxy for chronological age. Histological approaches have been traditionally used for LF determination of crustaceans (e.g. Sheehy et al. 1994, Mar Biol 121:237-245), but over the last decade extraction approaches for neural tissues have been introduced (Ju et al. 1999, Mar Ecol Prog Ser 185:171-179) and tested (Ju et al. 2001, Mar Ecol Prog Ser 224:197-205; 2003, Fish …
Estimation Of Submarine Groundwater Discharge From Bulk Ground Electrical Conductivity Measurements, Thomas Stieglitz, John Rapaglia, Henry Bokuniewicz
Estimation Of Submarine Groundwater Discharge From Bulk Ground Electrical Conductivity Measurements, Thomas Stieglitz, John Rapaglia, Henry Bokuniewicz
Biology Faculty Publications
The utility of bulk ground conductivity (BGC) measurements in the estimation of submarine groundwater discharge (SGD) was investigated at four sites covering a range of hydrogeological settings, namely Cockburn Sound (Australia); Shelter Island (USA); Ubatuba Bay (Brazil) and Flic-en-Flac Bay (Mauritius). At each of the sites, BGC was surveyed in the intertidal zone, and seepage meters were used for direct measurements of SGD flow rates. In the presence of detectable salinity gradients in the sediment, a negative correlation between SGD and BGC was recorded. The correlation is site-specific and is dependent on both the type of sediment and the mixing …
Age, Growth, And Demography Of The Sandbar Shark, Carcharhinus Plumbeus, Over Temporal And Spatial Scales, Jason G. Romine
Age, Growth, And Demography Of The Sandbar Shark, Carcharhinus Plumbeus, Over Temporal And Spatial Scales, Jason G. Romine
Dissertations, Theses, and Masters Projects
Numbers of sandbar sharks, Carcharhinus plumbeus, in the Northwest Atlantic have experienced drastic declines since the early 1980's reaching their minima during the early 1990's. Catch rates in the early 1990's were a mere 25% of those during the 1980's. Such drastic reductions in other fish stocks have often caused compensatory responses, most notably the cod stocks in the Northwest Atlantic. Compensatory responses in depressed populations may include decreased natural mortality, increased fecundity, or increased growth rates. Compensation for population fluctuations below carrying capacities have been recognized for many terrestrial and oceanic r-selected organisms, but few instances have been noted …
Survival Of Eastern Oysters Crassostrea Virginica From Three Lines Following Experimental Challenge With Bacterial Pathogens, Javier Gomez-Leon, Luisa Villamil, Scott A. Salger, Rachel Sallum, Antonio Remacha-Trivino, Dale F. Leavitt, Marta Gomez-Chiarri
Survival Of Eastern Oysters Crassostrea Virginica From Three Lines Following Experimental Challenge With Bacterial Pathogens, Javier Gomez-Leon, Luisa Villamil, Scott A. Salger, Rachel Sallum, Antonio Remacha-Trivino, Dale F. Leavitt, Marta Gomez-Chiarri
Fisheries, Animal and Veterinary Sciences Faculty Publications
Shellfish production is often affected by bacterial pathogens that cause high losses in hatcheries and nurseries. We evaluated the relative survival of larvae and juveniles of 3 Crassostrea virginica oyster lines: (1) GHP, a Rhode Island line; (2) NEHY, a line resistant to dermo and multinucleated sphere X diseases; and (3) FLOWERS, a line resistant to Roseovarius oyster disease, experimental challenge with Vibrio spp. isolates RE22 and RE101, causative agents of bacillary necrosis in Pacific oyster larvae, and the type strain of Roseovarius crassostreae, causative agent of Roseovarius oyster disease. All of the isolates were able to induce significant …
Rates Of Carbonate Dissolution In Permeable Sediments Estimated From Porewater Profiles: The Role Of Sea Grasses, David J. Burdige, Richard C. Zimmerman, Xinping Hu
Rates Of Carbonate Dissolution In Permeable Sediments Estimated From Porewater Profiles: The Role Of Sea Grasses, David J. Burdige, Richard C. Zimmerman, Xinping Hu
OES Faculty Publications
In this study we estimate sediment carbonate dissolution rates for sandy sea grass sediments on the Bahamas Bank using an inverse pore-water advection/diffusion/reaction model constrained by field observations. This model accounts for sea grass O2 input to these sediments, and also parameterizes pore-water advection through these permeable sediments as a nonlocal exchange process. The resulting rates of carbonate dissolution are positively correlated with sea grass density, and are comparable with previous rate estimates for Florida Bay sediments. In contrast, the advective uptake of O2 by these sediments decreased with increasing sea grass density. This suggests that the competing …
Radiocarbon Evidence For The Importance Of Surface Vegetation On Fermentation And Methanogenesis In Contrasting Types Of Boreal Peatlands, J. P. Chanton, P. H. Glaser, L. S. Chasar, David J. Burdige, M. E. Hines, D. I. Seigel, L. B. Tremblay, W. T. Cooper
Radiocarbon Evidence For The Importance Of Surface Vegetation On Fermentation And Methanogenesis In Contrasting Types Of Boreal Peatlands, J. P. Chanton, P. H. Glaser, L. S. Chasar, David J. Burdige, M. E. Hines, D. I. Seigel, L. B. Tremblay, W. T. Cooper
OES Faculty Publications
We found a consistent distribution pattern for radiocarbon in dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), and methane replicated across spatial and temporal scales in northern peatlands from Minnesota to Alaska. The 14C content of DOC is relatively modern throughout the peat column, to depths of 3 m. In sedge-dominated peatlands, the 14C contents of the products of respiration, CH4 and DIC, are essentially the same and are similar to that of DOC. In Sphagnum- and woody plant-dominated peatlands with few sedges, however, the respiration products are similar but intermediate between the 14C contents of …
Co2 Sensitivity Of Southern Ocean Phytoplankton, Philippe D. Tortell, Christopher D. Payne, Yingyu Li, Scarlett Trimborn, Bjorn Rost, Walker O. Smith, Christina Riesselman, Robert B. Dunbar, Peter Sedwick, Giacomo R. Ditullio
Co2 Sensitivity Of Southern Ocean Phytoplankton, Philippe D. Tortell, Christopher D. Payne, Yingyu Li, Scarlett Trimborn, Bjorn Rost, Walker O. Smith, Christina Riesselman, Robert B. Dunbar, Peter Sedwick, Giacomo R. Ditullio
OES Faculty Publications
The Southern Ocean exerts a strong impact on marine biogeochemical cycles and global air-sea CO2 fluxes. Over the coming century, large increases in surface ocean CO2 levels, combined with increased upper water column temps. and stratification, are expected to diminish Southern Ocean CO2 uptake. These effects could be significantly modulated by concomitant CO2-dependent changes in the region's biol. carbon pump. Here we show that CO2 concentrations affect the physiology, growth and species composition. of phytoplankton assemblages in the Ross Sea, Antarctica. Field results from in situ sampling and ship-board incubation experiments demonstrate that inorganic …
Food Limitation In Larval Fish: Ontogenetic Variation In Feeding Scope And Its Potential Effect On Survival, Alexander B. Bochdansky, Peter Grønkjær, Pierre Pepin, William C. Leggett
Food Limitation In Larval Fish: Ontogenetic Variation In Feeding Scope And Its Potential Effect On Survival, Alexander B. Bochdansky, Peter Grønkjær, Pierre Pepin, William C. Leggett
OES Faculty Publications
We used the radiated shanny Ulvaria subbifurcataas a model species to explore the relative gut fullness from hatch to metamorphosis of wild larvae, and compared these values with those of laboratory-reared larvae fed at maximum rates. Ingestion rates of most wild larvae were above starvation levels but below the maximum feeding levels of laboratory-reared larvae. Twenty-six percent of freshly-hatched wild larvae and 11% of large, pre-settlement wild larvae had insufficient food in their stomach to satisfy metabolic requirements. These results, taken on their own, are consistent with the much hypothesized increased foraging performance and survival of larger larvae relative …
Ship Ballast Tanks: How Microbes Travel The World, Fred C. Dobbs
Ship Ballast Tanks: How Microbes Travel The World, Fred C. Dobbs
OES Faculty Publications
As the international shipping fleet travels the oceans, it carries with it hidden cargoes of microbes. Fred C. Dobbs explores the hazards posed and what can be done to counteract them.
Absorption Spectral Slopes And Slope Ratios As Indicators Of Molecular Weight, Source, And Photobleaching Of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, Kenneth Mopper
Absorption Spectral Slopes And Slope Ratios As Indicators Of Molecular Weight, Source, And Photobleaching Of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, Kenneth Mopper
Chemistry & Biochemistry Faculty Publications
A new approach for parameterizing dissolved organic matter ( DOM) ultraviolet-visible absorption spectra is presented. Two distinct spectral slope regions ( 275-295 nm and 350-400 nm) within log-transformed absorption spectra were used to compare DOM from contrasting water types, ranging from wetlands (Great Dismal Swamp and Suwannee River) to photobleached oceanic water ( Atlantic Ocean). On the basis of DOM size-fractionation studies ( ultrafiltration and gel filtration chromatography), the slope of the 275-295- nm region and the ratio of these slopes (SR; 275-295- nm slope : 350-400- nm slope) were related to DOM molecular weight ( MW) and …
Bottom-Up And Top-Down Controls On Sedimentary Ecosystem Functioning In A Seagrass Habitat, Amanda C. Spivak
Bottom-Up And Top-Down Controls On Sedimentary Ecosystem Functioning In A Seagrass Habitat, Amanda C. Spivak
Dissertations, Theses, and Masters Projects
Coastal seagrass ecosystems are complex habitats that are increasingly influenced by human perturbations. Disturbances that affect the strength of bottom-up (i.e. resource availability) and top-down (i.e. consumer) controls may also influence biomass distribution between trophic levels, sediment biogeochemistry, and seagrass ecosystem metabolism. Here, I experimentally tested how top-down and bottom-up perturbations interact with community structure (diversity, food chain length of epibenthic consumers) to alter sediment biogeochemistry and ecosystem metabolism in an experimental eelgrass (Zostera marina ) system. My data indicated that resource availability influenced SOM composition and ecosystem metabolism. Light availability tended to be a stronger determinant of SOM composition …
Mesopelagic Zooplankton Feeding Ecology And Effects On Particle Repackaging And Carbon Transport In The Subtropical And Subarctic North Pacific Ocean, Stephanie E. Wilson
Mesopelagic Zooplankton Feeding Ecology And Effects On Particle Repackaging And Carbon Transport In The Subtropical And Subarctic North Pacific Ocean, Stephanie E. Wilson
Dissertations, Theses, and Masters Projects
Differences in zooplankton community structure and diet within the mesopelagic zone (base of euphotic zone to 1000 m) play a key role in affecting the efficiency by which organic matter is exported to depth, but how the structure of mesopelagic food webs change with depth or location is poorly known. I examined how mesopelagic zooplankton affect particle export in an oligotrophic (Hawaii Ocean Time-series site ALOHA) compared to a mesotrophic (Japanese time series site K2) open-ocean system. In the first part of the study, I investigated how fecal pellet characteristics change with depth in order to quantify the extent of …
Novel Use Of A Natural Isotope Signature To Track Recruitment And Evaluate Age Determination Methods For The 2002 Year Class Of American Shad In The York River, Sally A. Upton
Dissertations, Theses, and Masters Projects
No abstract provided.
Naturally Present Fatty Acids As Internal Calibrants For Fourier Transform Mass Spectra Of Dissolved Organic Matter, Rachel L. Sleighter, Georgina A. Mckee, Zhanfei Liu, Patrick G. Hatcher
Naturally Present Fatty Acids As Internal Calibrants For Fourier Transform Mass Spectra Of Dissolved Organic Matter, Rachel L. Sleighter, Georgina A. Mckee, Zhanfei Liu, Patrick G. Hatcher
Chemistry & Biochemistry Faculty Publications
The analysis of dissolved organic matter ( DOM) by Fourier transform ion cyclotron resonance mass spectrometry ( FTICR- MS) has gained wide interest recently, driven primarily by its ultrahigh resolving power and mass accuracy. Accurate calibration of mass spectra is a key step to successfully decipher the DOM components. We propose a simple and accurate method to internally calibrate the peaks in the complex spectra without the need to add a calibrant. Mass spectra of DOM samples from the Dismal Swamp, Virginia, and the lower Chesapeake Bay display the presence of naturally occurring fatty acids which can be readily recognized …
Interactions Between Changing Pco2, N2 Fixation, And Fe Limitation In The Marine Unicellular Cyanobacterium Crocosphaera, Fei-Xue Fu, Margaret R. Mulholland, Nathan S. Garcia, Aaron Beck, Mark E. Warner, Sergio A. Sañudo, David A. Hutchins
Interactions Between Changing Pco2, N2 Fixation, And Fe Limitation In The Marine Unicellular Cyanobacterium Crocosphaera, Fei-Xue Fu, Margaret R. Mulholland, Nathan S. Garcia, Aaron Beck, Mark E. Warner, Sergio A. Sañudo, David A. Hutchins
OES Faculty Publications
We examined the physiological responses of steady-state iron (Fe)-replete and Fe-limited cultures of the biogeochemically critical marine unicellular diazotrophic cyanobacterium Crocosphaera at glacial (19 Pa; 190 ppm), current (39 Pa; 380 ppm), and projected year 2100 (76 Pa; 750 ppm) CO2 levels. Rates of N2 and CO2 fixation and growth increased in step with increasing partial pressure of CO2 (pCO2), but only under Fe- replete conditions. N2) and carbon fixation rates at 75 Pa CO2 were 1.4-1.8-fold and 1.2-2.0-fold higher, respectively, relative to those at present day and glacial pCO2 …
Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams
Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams
CCPO Publications
Large-scale transport of seawater in ocean currents may generate spatially complex population structure through the advection of life stages of marine fish species. To test this, we compared the chemistry of otolith nuclei from Patagonian toothfish (Dissostichus eleginoides), presently managed as spatially discrete Populations corresponding to fishing management areas along the Antarctic Circumpolar Current (ACC), which transports water eastward around the Southern Ocean. The chemistry of otolith nuclei, laid down during early life, differed significantly between fishing areas Off South America and the Antarctic and between some Antarctic areas. However, we found significant discrepancies from expectation for a …
Interspecific Interactions In Oyster Reef Communities: The Effect Of Established Fauna On Oyster Larval Recruitment, Brian B. Barnes
Interspecific Interactions In Oyster Reef Communities: The Effect Of Established Fauna On Oyster Larval Recruitment, Brian B. Barnes
Dissertations, Theses, and Masters Projects
The behaviors of oyster larvae are difficult to monitor or experimentally manipulate, especially in field conditions. As a result, little is known of the fate of oysters in the larval portion of their life cycle, prior to recruitment. At the transition from pelagic larvae to benthic adults, larvae are likely to come into contact with many invertebrates resident on oyster reefs. Of these, fouling epifauna are generally believed to reduce the settlement of interspecific larvae through competitive exclusion and predation. Studies of these interactions, however, often utilize artificial settlement panels, which can exhibit different recruitment patterns to those observed on …
Natural Mortality Of Blue Crab: Estimation And Influence On Population Dynamics, David A. Hewitt
Natural Mortality Of Blue Crab: Estimation And Influence On Population Dynamics, David A. Hewitt
Dissertations, Theses, and Masters Projects
The blue crab Callinectes sapidus supports one of the most important fisheries in the Chesapeake Bay and is the leading contributor to blue crab landings in the United States. Assessment and management of blue crab stocks has been hampered by a lack of estimates of natural mortality rates, a key parameter in assessment models. In Chapter 2, we demonstrate that the approach used for estimating natural mortality that had been used in past assessments was flawed, and provide justification for a superior alternative. In Chapter 3, we synthesize our current understanding of natural mortality rates in adult blue crab and …