Other Environmental Sciences Commons^™

Three-Dimensional Wind Speed And Flux Measurements Over A Rain-Fed Soybean Field Using Orthogonal And Non-Orthogonal Sonic Anemometer Designs, Taylor Thomas

School of Natural Resources: Dissertations, Theses, and Student Research

The eddy covariance method for estimating fluxes of trace gases, energy and momentum in the constant flux layer above a plant canopy fundamentally relies on accurate measurements of the vertical wind speed. This wind speed is typically measured using a three-dimensional ultrasonic anemometer. Previous studies comparing anemometers with orthogonal transducer sets to those with non-orthogonal transducer sets suggest differences in measured 3D wind speed components, particularly for a vertical component. These differences, attributed to additional flow distortion caused by the non-orthogonal transducer arrangement and support structure, directly affect fluxes of trace gases, energy and momentum. A field experiment was conducted …

8000 Years Of Environmental Evolution Of Barrier–Lagoon Systems Emplaced In Coastal Embayments (Nw Iberia), Rita González-Villanueva, Marta Pérez-Arlucea, Susana Costas, Roberto Bao, Xose L. Otero, Ronald J. Goble

Department of Earth and Atmospheric Sciences: Faculty Publications

The rocky and indented coast of NW Iberia is characterized by the presence of highly valuable and vulnerable, small and shallow barrier– lagoon systems structurally controlled. The case study was selected to analyse barrier–lagoon evolution based on detailed sedimentary architecture, chronology, geochemical and biological proxies. The main objective is to test the hypothesis of structural control and the significance at regional scale of any highenergy event recorded. This work is also aimed at identifying general patterns and conceptualizing the formation and evolution of this type of coastal systems. The results allowed us to establish a conceptual model of Holocene evolution …

The Vulnerability Of Indo-Pacific Mangrove Forests To Sea-Level Rise, Catherine E. Lovelock, Donald R. Cahoon, Daniel A. Friess, Glenn R. Guntenspergen, Ken W. Krauss, Ruth Reef, Kerrylee Rogers, Megan L. Saunders, Frida Sidik, Andrew Swales, Neil Saintilan, Le Xuan Thuyen, Tran Triet

United States Geological Survey: Staff Publications

Sea-level rise can threaten the long-term sustainability of coastal communities and valuable ecosystems such as coral reefs, salt marshes and mangroves^1,2. Mangrove forests have the capacity to keep pace with sea-level rise and to avoid inundation through vertical accretion of sediments, which allows them to maintain wetland soil elevations suitable for plant growth³. The Indo- Pacific region holds most of the world’s mangrove forests⁴, but sediment delivery in this region is declining, owing to anthropogenic activities such as damming of rivers⁵. This decline is of particular concern because the Indo-Pacific region is …

The Prairie Post Quarterly Newsletter Of The High Plains Regional Climate Center- October 2015, Martha Shulski, Natalie Umphlett, Bill Sorensen, Glen Roebke, Crystal J. Stiles

HPRCC Newsletter

Inside this issue:

Message from the director........................................1

Staff spotlight...........................1

New website design and products.....................................2

Training workshops................3

AWDN information.................4

Update on regional climate conditions and El Niño..........4

Research highlight..................5

Outreach/engagement.........5

Recent and upcoming travel and activities.............................6

Droughtscape- Fall 2015, Kelly Smith

Droughtscape, Quarterly Newsletter of NDMC, 2007-

CONTENTS

Director’s column.........................1

NDMC 20th anniversary .............. 2

Employment opportunity..............3

Third quarter 2015 climate summary ...................................... 4

Third quarter 2015 impacts summary ...................................... 6

Workshop in Ethiopia...................8

San Antonio multi-hazard tournament .................................. 9

Healthy soil is drought buffer ............. 10

U2U Award ................................ 11

Cost-benefit analysis for utilities managing drought......................12

NDMC helps with rural poll questions on climate..................13

Introducing our post-docs..........14

South Korean visitors ................ 14

Rapid Label-Free Detection Of E. Coli Using Antimicrobial Peptide Assisted Impedance Spectroscopy, Keren Jieng, Hashem Etayash, Sarfuddin Azmi, Selvaraj Naicker, Mahtab Hassanpourfard, Parmiss Mojir Shaibani, Garima Thakur, Kamaljit Kaur, Thomas Thundat

Pharmacy Faculty Articles and Research

There is an increasing demand for rapid detection of waterborne pathogens to monitor drinking water safety. We demonstrate a compact, label-free sensor array for rapid detection of Escherichia coli (E. coli) in contaminated water samples using antimicrobial peptide assisted impedimetric sensor platform. Interdigitated electrode arrays immobilized with the antimicrobial peptide Colicin V (ColV) were used to screen the affinity towards different bacterial strains by monitoring impedance variations in real-time. This ColV assisted impedance biosensor exhibited high selectivity towards Gram-negative strains particularly towards E. coli strains. This selective detection of E. coli from other strains was observed at 10 …

Radiocarbon Isotopic Classification Of Deep Tropical Forest Soils, Brooke Butler, Karis J. Mcfarlane, Jennifer Pett-Ridge, Katherine A. Heckman

STAR Program Research Presentations

Tropical forest soils have an important role in global carbon (C) stocks. Small changes in the cycling of C could drastically affect atmospheric carbon dioxide (CO2) concentrations and active cycling of carbon in a forest community. Currently, little is understood of how tropical forest soils will respond to the increasing global temperatures. To examine the effects of warming/ drought on losses of older versus younger soil C pools, we implemented radiocarbon (14C) isotopic characterization of various soil plot samples and depths from the Luquillo Experimental Forest, Puerto Rico. 14C was measured using Accelerated Mass Spectrometry (AMS) from catalytically condensed carbon …

Modeling Gross Primary Production Of Maize And Soybean Croplands Using Light Quality, Temperature, Water Stress, And Phenology, Anthony L. Nguy-Robertson, Andrew E. Suyker, Xiangming Xiao

School of Natural Resources: Faculty Publications

Vegetation productivity metrics, such as gross primary production (GPP) may be determined from the efficiency with which light is converted into photosynthates, or light use efficiency (ϵ). Therefore, accurate measurements and modeling of ϵ is important for estimating GPP in each ecosystem. Previous studies have quantified the impacts of biophysical parameters on light use efficiency based GPP models. Here we enhance previous models utilizing four scalars for light quality (i.e., cloudiness), temperature, water stress, and phenology for data collected from both maize and soybean crops at three Nebraska AmeriFlux sites between 2001 and 2012 (maize: 26 field-years; soybean: …

Droughtscape- Summer 2015, Kelly Smith

Droughtscape, Quarterly Newsletter of NDMC, 2007-

CONTENTS

Director’s column.........................1

New Drought Risk Management Research Center ......................... 3

Second quarter 2015 climate summary ...................................... 4

Second quarter 2015 impacts summary ...................................... 6

Caribbean region an innovator in drought early warning..................8

Wind River Reservation tribes move toward drought planning ............... 10

Ranchers, U.S. Forest Service, University of Arizona co-develop drought plans.............................12

Summer blockbuster from CoCoRaHS: Assessing Drought in the U.S........................14

Western states drought coordinators meet......................14

The Prairie Post Quarterly Newsletter Of The High Plains Regional Climate Center- July 2015, Martha Shulski, Natalie Umphlett, Bill Sorensen, E. Hunt, Crystal J. Stiles

HPRCC Newsletter

Inside this issue:

Message from the director........................................1

Staff spotlight...........................1

Visit from Office of Science and Technology Policy...........2

Partnership spotlight.............2

AWDN information.................3

Update on regional climate conditions..................................3

Product highlight....................4

Research highlight..................4

Outreach/engagement.........5

Recent and upcoming travel and activities.............................6

Short-Term Response Of Holcus Lanatus L. (Common Velvetgrass) To Chemical And Manual Control At Yosemite National Park, Usa, Laura J. Jones, Steven M. Ostoja, Matthew L. Brooks, Martin Hutten

United States Geological Survey: Staff Publications

One of the highest priority invasive species at both Yosemite and Sequoia and Kings Canyon national parks is Holcus lanatus L. (common velvetgrass), a perennial bunchgrass that invades mid-elevation montane meadows. Despite velvetgrass being a high priority species, there is little information available on control techniques. The goal of this project was to evaluate the short-term response of a single application of common chemical and manual velvetgrass control techniques. The study was conducted at three montane sites in Yosemite National Park. Glyphosate spotspray treatments were applied at 0.5, 1.0, 1.5, and 2.0% concentrations, and compared with hand pulling to evaluate …

The Prairie Post Quarterly Newsletter Of The High Plains Regional Climate Center- April 2015, Martha Shulski, Natalie A. Umphlett, Bill Sorensen, Crystal J. Stiles

HPRCC Newsletter

Inside this issue:

Message from the director........................................1

Staff spotlight...........................1

Stakeholder engagement activities......................................2

Partnership spotlight.............2

AWDN information.................3

Update on regional climate conditions..................................3

Product highlight....................4

Research highlight..................4

Outreach events......................5

Recent and upcoming travel and activities.............................6

Uncertainty In Simulating Gross Primary Production Of Cropland Ecosystem From Satellite-Based Models, Wenping Yuan, Wenwen Cai, Anthony L. Nguy-Robertson, Huajun Fang, Andrew E. Suyker, Yang Chen, Wenjie Dong, Shuguang Liu, Haicheng Zhang

School of Natural Resources: Faculty Publications

Accurate estimates of gross primary production (GPP) for croplands are needed to assess carbon cycle and crop yield. Satellite-based models have been developed to monitor spatial and temporal GPP patterns. However, there are still large uncertainties in estimating cropland GPP. This study compares three light use efficiency (LUE) models (MODIS-GPP, EC-LUE, and VPM) with eddy-covariance measurements at three adjacent AmeriFlux crop sites located near Mead, Nebraska, USA. These sites have different croprotation systems (continuous maize vs. maize and soybean rotated annually) and water management practices (irrigation vs. rainfed). The results reveal several major uncertainties in estimating GPP which need to …

Drougthscape- Spring 2015, Kelly Smith

Droughtscape, Quarterly Newsletter of NDMC, 2007-

CONTENTS

Director’s column.........................1

South Plains ranch workshops ........... 3

First quarter drought summary .............. 4

First quarter impacts summary .............. 6

Gary’s favorite pond, D1-4...........8

NDMC’s Haigh leads U2U pubs ..............10

SW MT watersheds convene.................12

Wind River monitors drought..................13

Morocco’s new drought index................14

NE Brazil drought monitoring.....16

EU’s drought initiative................16

U.S. Drought Monitor Forum ..... 16

How CO tourism coped in 2012........... 17

Productivity, Absorbed Photosynthetically Active Radiation, And Light Use Efficiency In Crops: Implications For Remote Sensing Of Crop Primary Production, Anatoly A. Gitelson, Yi Peng, Timothy J. Arkebauer, Andrew E. Suyker

School of Natural Resources: Faculty Publications

Vegetation productivity metrics such as gross primary production (GPP) at the canopy scale are greatly affected by the efficiency of using absorbed radiation for photosynthesis, or light use efficiency (LUE). Thus, close investigation of the relationships between canopy GPP and photosynthetically active radiation absorbed by vegetation is the basis for quantification of LUE. We used multiyear observations over irrigated and rainfed contrasting C3 (soybean) and C4 (maize) crops having different physiology, leaf structure, and canopy architecture to establish the relationships between canopy GPP and radiation absorbed by vegetation and quantify LUE. Although multiple LUE definitions are reported in the literature, …

The Prairie Post Quarterly Newsletter Of The High Plains Regional Climate Center- January 2015, Martha Shulski, Natalie Umphlett, Bill Sorensen, Crystal J. Stiles

HPRCC Newsletter

Inside this issue:

Message from the director........................................1

Stakeholder engagement activities......................................2

AWDN news...............................3

Marketing efforts.....................3

Climate services and information................................4

Product highlight....................5

Outreach events and research highlights.................5

Recent and upcoming travel and activities.............................6

Multi-Scale Evaluation Of Light Use Efficiency In Modis Gross Primary Productivity For Croplands In The Midwestern United States, Qinchuan Xin, Mark Broich, Andrew E. Suyker, Le Yu, Peng Gong

School of Natural Resources: Faculty Publications

Satellite remote sensing provides continuous observations of land surfaces, thereby offering opportunities for large-scale monitoring of terrestrial productivity. Production Efficiency Models (PEMs) have been widely used in satellite-based studies to simulate carbon exchanges between the atmosphere and ecosystems. However, model parameterization of the maximum light use efficiency (ε*_GPP) varies considerably for croplands in agricultural studies at different scales. In this study, we evaluate cropland ε*_GPP in the MODIS Gross Primary Productivity (GPP) model (MOD17) using in situ measurements and inventory datasets across the Midwestern US. The site-scale calibration using 28 site-years tower measurements derives ε*_GPP values …

Toxicity Reference Values For Chlorophacinone And Their Application For Assessing Anticoagulant Rodenticide Risk To Raptors, Barnett A. Rattner, Katherine E. Horak, Rebecca S. Lazarus, Sandra L. Schultz, Susan Knowles, Benjamin G. Abbo, Steven F. Volker

United States Geological Survey: Staff Publications

Despite widespread use and benefit, there are

growing concerns regarding hazards of second-generation

anticoagulant rodenticides to non-target wildlife which

may result in expanded use of first-generation compounds,

including chlorophacinone (CPN). The toxicity of CPN

over a 7-day exposure period was investigated in American

kestrels (Falco sparverius) fed either rat tissue mechanically-

amended with CPN, tissue from rats fed Rozol bait

(biologically-incorporated CPN), or control diets (tissue

from untreated rats or commercial bird of prey diet)

ad libitum. Nominal CPN concentrations in the formulated

diets were 0.15, 0.75 and 1.5 µg/g food wet weight, and

measured concentrations averaged 94 …

Global Change And Conservation Triage On National Wildlife Refuges, Fred Johnson, Mitchell J. Eaton, Gerard Mcmahon, Raye Nilius, Michael R. Bryant, Dave Case, Julien Martin, Nathan Wood, Laura Taylor

United States Geological Survey: Staff Publications

National Wildlife Refuges (NWRs) in the United States play an important role in the adaptation of social-ecological systems to climate change, land-use change, and other global-change processes. Coastal refuges are already experiencing threats from sea-level rise and other change processes that are largely beyond their ability to influence, while at the same time facing tighter budgets and reduced staff. We engaged in workshops with NWR managers along the U.S. Atlantic coast to understand the problems they face from global-change processes and began a multidisciplinary collaboration to use decision science to help address them. We are applying a values-focused approach to …

Drougthscape- Winter 2015, Kelly Smith

Droughtscape, Quarterly Newsletter of NDMC, 2007-

CONTENTS

Director’s report...........................1

Central U.S. 2012 report..............3

Oct.-Dec. drought summary ........ 4

2014 drought summary................6

Caribbean capacity building ........ 8

Drought impacts in 2014..............9

California timeline 2014.............12

UC Davis ranching workshop .... 14

NASA SMAP data......................16

Global drought info system........17

Community Capitals .................. 18

Evaluation and assessment.......19

Indicator-impact research .........20

NDMC on YouTube....................21

Sea Level, Paleogeography, And Archeology On California's Northern Channel Islands, Leslie Reeder- Myers, Jon Erlandson, Daniel R. Muhs, Torben Rick

United States Geological Survey: Staff Publications

Sea-level rise during the late Pleistocene and early Holocene inundated nearshore areas in many parts of the world, producing drastic changes in local ecosystems and obscuring significant portions of the archeological record. Although global forces are at play, the effects of sea-level rise are highly localized due to variability in glacial isostatic adjustment (GIA) effects. Interpretations of coastal paleoecology and archeology require reliable estimates of ancient shorelines that account for GIA effects. Here we build on previous models for California's Northern Channel Islands, producing more accurate late Pleistocene and Holocene paleogeographic reconstructions adjusted for regional GIA variability. This region has …

Developing A 30-M Grassland Productivity Estimation Map For Central Nebraska Using 250-M Modis And 30-M Landsat-8 Observations, Yingxin Gu, Bruce K. Wylie

United States Geological Survey: Staff Publications

Accurately estimating aboveground vegetation biomass productivity is essential for local ecosystem assessment and best land management practice. Satellite-derived growing season time-integrated Normalized Difference Vegetation Index (GSN) has been used as a proxy for vegetation biomass productivity. A 250-m grassland biomass productivity map for the Greater Platte River Basin had been developed based on the relationship between Moderate Resolution Imaging Spectroradiometer (MODIS) GSN and Soil Survey Geographic (SSURGO) annual grassland productivity. However, the 250-m MODIS grassland biomass productivity map does not capture detailed ecological features (or patterns) andmay result in only generalized estimation of the regional total productivity. Developing a high …

A Simple Web-Based Tool To Compare Freshwater Fish Data Collected Using Afs Standard Methods, Scott A. Bonar, Norman Mercado-Silva, Matt Rahr, Yuta T. Torrey, Averill Cate Jr.

United States Geological Survey: Staff Publications

The American Fisheries Society (AFS) recently published Standard Methods for Sampling North American Freshwater Fishes. Enlisting the expertise of 284 scientists from 107 organizations throughout Canada, Mexico, and the United States, this text was developed to facilitate comparisons of fish data across regions or time. Here we describe a user-friendly web tool that automates among-sample comparisons in individual fish condition, population length-frequency distributions, and catch per unit effort (CPUE) data collected using AFS standard methods. Currently, the web tool (1) provides instantaneous summaries of almost 4,000 data sets of condition, length frequency, and CPUE of common freshwater fishes collected …

Sea Level And Turbidity Controls On Mangrove Soil Surface Elevation Change, Catherine E. Lovelock, Maria Fernanda Adame, Vicki Bennion, Matthew Hayes, Ruth Reef, Nadia Santini, Donald R. Cahoon

United States Geological Survey: Staff Publications

Increases in sea level are a threat to seaward fringing mangrove forests if levels of inundation exceed the physiological tolerance of the trees; however, tidal wetlands can keep pace with sea level rise if soil surface elevations can increase at the same pace as sea level rise. Sediment accretion on the soil surface and belowground production of roots are proposed to increase with increasing sea level, enabling intertidal habitats to maintain their position relative to mean sea level, but there are few tests of these predictions in mangrove forests. Here we used variation in sea level and the availability of …

Global Change And Conservation Triage On National Wildlife Refuges, Fred Johnson, Mitchell J. Eaton, Gerard Mcmahon, Raye Nilius, Michael R. Bryant, Dave Case, Julien Martin, Nathan J. Wood, Laura Taylor

United States Geological Survey: Staff Publications

National Wildlife Refuges (NWRs) in the United States play an important role in the adaptation of social-ecological systems to climate change, land-use change, and other global-change processes. Coastal refuges are already experiencing threats from sea-level rise and other change processes that are largely beyond their ability to influence, while at the same time facing tighter budgets and reduced staff. We engaged in workshops with NWR managers along the U.S. Atlantic coast to understand the problems they face from global-change processes and began a multidisciplinary collaboration to use decision science to help address them. We are applying a values-focused approach to …

A Bird’S- Eye View Of The Usa National Phenology Network: An Off-The-Shelf Monitoring Program, Jherime Kellerman, Caroline A. F. Enquist, Diana L. Humple, Nathaniel E. Seavy, Alyssa Rosemartin, Renée L. Cormier, Lorianne Barnett

United States Geological Survey: Staff Publications

Phenology is central to the biology and ecology of organisms and highly sensitive to climate. Differential responses to climate change are impacting phenological synchrony of inter- acting species, which has been implicated in the decline of migratory birds that rely on seasonal resources. However, few studies explicitly measure phenology of seasonal habitat resources on the breeding and wintering grounds and at stopover sites. While avian monitoring methods are widely standardized, methods of monitoring resource phenology can be highly variable and difficult to integrate. The USA National Phenology Network (USA- NPN) has developed standardized plant and animal phenology protocols and a …

Phosphorus Retention In A Lowland Neotropical Stream Following An Eight-Year Enrichment Experiment, Gaston E. Small, Marcelo Ardón, John H. Duff, Alan P. Jackman, Alonso Ramírez, Frank J. Triska, Catherine M. Pringle

United States Geological Survey: Staff Publications

Human alteration of the global P cycle has led to widespread P loading in freshwater ecosystems. Much research has been devoted to the capacity of wetlands and lakes to serve as long-term sinks for P inputs from the watershed, but we know much less about the potential of headwater streams to serve in this role. We assessed storage and retention of P in biotic and abiotic compartments after an 8-y experimental P addition to a 1st-order stream in a Neotropical wet forest. Sediment P extractions indicated that nearly all P storage was in the form of Fe- and Al-bound P …

Decadal Re-Evaluation Of Contaminant Exposure And Productivity Of Ospreys (Pandion Haliaetus) Nesting In Chesapeake Bay Regions Of Concern, Rebecca S. Lazarus, Barnett A. Rattner, Peter C. Mcgowan, Robert C. Hale, Sandra L. Schultz, Natalie K. Karouna-Renier, Mary Ann Ottinger

United States Geological Survey: Staff Publications

The last large-scale ecotoxicological study of ospreys (Pandion haliaetus) in Chesapeake Bay was conducted in 2000-2001 and focused on U.S. EPA-designated Regions of Concern (ROCs; Baltimore Harbor/ Patapsco, Anacostia/middle Potomac, and Elizabeth Rivers). In 2011-2012, ROCs were re-evaluated to determine spatial and temporal trends in productivity and contaminants. Concentrations of p,p'-DDE were low in eggs and below the threshold associated with eggshell thinning. Eggs from the Anacostia/ middle Potomac Rivers had lower total PCB concentrations in 2011 than in 2000; however, concentrations remained unchanged in Baltimore Harbor. Polybrominated diphenyl ether flame retardants declined by 40%, and five alternative …

Investigating Endocrine And Physiological Parameters Of Captive American Kestrels Exposed By Diet To Selected Organophosphate Flame Retardants, Kimberly J. Fernie, Vince Palace, Lisa E. Peters, Nil Basu, Robert J. Letcher, Natalie K. Karouna-Renier, Sandra L. Schultz, Rebecca S. Lazarus, Barnett A. Rattner

United States Geological Survey: Staff Publications

Organophosphate triesters are high production volume

additive flame retardants (OPFRs) and plasticizers. Shown to accumulate

in abiotic and biotic environmental compartments, little is known about the

risks they pose. Captive adult male American kestrels (Falco sparverius) were

fed the same dose (22 ng OPFR/g kestrel/d) daily (21 d) of tris(2-

butoxyethyl) phosphate (TBOEP), tris(2-chloroethyl) phosphate (TCEP),

tris(2-chloroisopropyl) phosphate (TCIPP), or tris(1,2-dichloro-2-propyl)

phosphate (TDCIPP). Concentrations were undetected in tissues (renal,

hepatic), suggesting rapid metabolism. There were no changes in glutathione

status, indicators of hepatic oxidative status, or the cholinergic system (i.e.,

cerebrum, plasma cholinesterases; cerebrum muscarinic, nicotinic receptors).

Modest …

Interactive Effects Of Climate Change With Nutrients, Mercury, And Freshwater Acidification On Key Taxa In The North Atlantic Landscape Conservation Cooperative Region, Alfred E. Pinkney, Charles T. Driscoll, David C. Evers, Michael J. Hooper, Jeffrey Horan, Jess W. Jones, Rebecca S. Lazarus, Harold G. Marshall, Andrew Milliken, Barnett A. Rattner, John Schmerfeld, Donald W. Sparling

United States Geological Survey: Staff Publications

The North Atlantic Landscape Conservation Cooperative LCC (NA LCC) is a public–private partnership that provides information to support conservation decisions that may be affected by global climate change (GCC) and other threats. The NA LCC region extends from southeast Virginia to the Canadian Maritime Provinces. Within this region, the US National Climate Assessment documented increases in air temperature, total precipitation, frequency of heavy precipitation events, and rising sea level, and predicted more drastic changes. Here, we synthesize literature on the effects of GCC interacting with selected contaminant, nutrient, and environmental processes to adversely affect natural resources within this region. Using …