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Full-Text Articles in Theory and Algorithms

Feature Extraction And Analysis Of Binaries For Classification, Micah Flack Apr 2020

Feature Extraction And Analysis Of Binaries For Classification, Micah Flack

Annual Research Symposium

The research project, Feature Extraction and, Analysis of Binaries for Classification, provides an in-depth examination of the features shared by unlabeled binary samples, for classification into the categories of benign or malicious software using several different methods. Because of the time it takes to manually analyze or reverse engineer binaries to determine their function, the ability to gather features and then instantly classify samples without explicitly programming the solution is incredibly valuable. It is possible to use an online service; however, this is not always viable depending on the sensitivity of the binary. With Python3 and the Pefile library, we …


Cylindrical Similarity Measurement For Helices In Medium-Resolution Cryo-Electron Microscopy Density Maps, Salim Sazzed, Peter Scheible, Maytha Alshammari, Willy Wriggers, Jing He Apr 2020

Cylindrical Similarity Measurement For Helices In Medium-Resolution Cryo-Electron Microscopy Density Maps, Salim Sazzed, Peter Scheible, Maytha Alshammari, Willy Wriggers, Jing He

College of Sciences Posters

Cryo-electron microscopy (cryo-EM) density maps at medium resolution (5-10 Å) reveal secondary structural features such as α-helices and β-sheets, but they lack the side chains details that would enable a direct structure determination. Among the more than 800 entries in the Electron Microscopy Data Bank (EMDB) of medium-resolution density maps that are associated with atomic models, a wide variety of similarities can be observed between maps and models. To validate such atomic models and to classify structural features, a local similarity criterion, the F1 score, is proposed and evaluated in this study. The F1 score is theoretically normalized to a …