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Articles 1 - 24 of 24
Full-Text Articles in Chemistry
Synthesizing Octahedral Polyomavirus Capsids For Cryogenic Electron Microscopy, Miles Robertson
Synthesizing Octahedral Polyomavirus Capsids For Cryogenic Electron Microscopy, Miles Robertson
Fall Student Research Symposium 2020
Polyomavirus capsids are polymorphic under different chemical conditions. These capsids have been synthesized artificially using purified VP1, the primary building block of the capsid. Five VP1 proteins come together and form a highly stable structure called a pentamer, and these pentamers can form capsids (Figure 1). Depending on chemical conditions, the capsids can form three distinct sizes: T=7, octahedral and icosahedral (Figure 2). Only one form is found in infectious virions, and its structure has been well studied. However, no high-resolution structure of the octahedral capsid currently exists. The goal of this research is to solve the structure of the …
Enabling Mars Farms Through Microbial Remediation Of Wastewater, Tyler Wallentine
Enabling Mars Farms Through Microbial Remediation Of Wastewater, Tyler Wallentine
Fall Student Research Symposium 2020
This research evaluates the capacity of photoheterotrophic purple non-sulfur bacteria to utilize wastewater organics to grow and produce nitrogen-rich biomass. Inhibitory components of wastewater are determined. A scaled up production system is designed and utilized to culture bacteria in wastewater. The application of this technology in the production of agriculturally viable amounts of nitrogen-rich biomass is evaluated in the context of a Mars mission and enabling agriculture in a barren environment.
Why Dogs Are Feared, Hannah Ericson
Why Dogs Are Feared, Hannah Ericson
Fall Student Research Symposium 2020
From German Shepherds to Pit bulls, a specific breed of dog is often singled out as being more dangerous than the others. There are stories and myths behind the behavior of such breeds, as well as simply looking scary. In this presentation, I will discuss why certain traits in dogs promote fear (such as dark coloring) and why certain breeds promote fear - such as a modern day prejudice that is quite similar to racism in the human society.
Cloning Type Iv-B Crispr System Into A Plasmid, Olivia Gornichec, Kailey Welch
Cloning Type Iv-B Crispr System Into A Plasmid, Olivia Gornichec, Kailey Welch
Fall Student Research Symposium 2020
Bacterial CRISPR-Cas systems have recently been repurposed as RNA-guided genome editors in research labs across the world. Yet CRISPR-Cas adaptive immune systems are very diverse and many systems remain uncharacterized. Discovering the structure and function of newly discovered and uncharacterized systems may further advance existing genome editing technologies, or lead to new ones. To better understand the function of the little-researched Type IV-B system we cloned the genes of a Type IV-B system from Mycobacterium J623 into a plasmid containing a target sequence of a Type IV-A and Type V system. The Type IV-B system was placed on the target …
The Impact Of Biological Components On A Dog's Personality, Kinsley Batson
The Impact Of Biological Components On A Dog's Personality, Kinsley Batson
Fall Student Research Symposium 2020
We interact with dogs every day, and they are often referred to as "man's best friend." But what makes a dog the happy-go-lucky, cuddly fur ball of happiness that so many love? Similar to humans, there is a nature vs. nurture debate on what shapes a dog's personality. While it is likely a mixture of both, I've researched a variety of biological components that help to make a dog a dog. Some of these include face shape, how their brain responds to audio stimuli, and a specific gene, also found in children with Williams syndrome, that is thought to make …
Pure Breeding At Its Finest, Justin Hunter
Pure Breeding At Its Finest, Justin Hunter
Fall Student Research Symposium 2020
This is a poster of my research on the affects pure breeding has on dogs and their health. There is a focus as well on the focus on neoteny and its affects on dogs.
Dogs In The Home Improve The Quality Of Life Of The People Living Inside, Tanner Stevenson
Dogs In The Home Improve The Quality Of Life Of The People Living Inside, Tanner Stevenson
Fall Student Research Symposium 2020
This poster explores how dogs improve the quality of life of the people they interact with. Regardless of underlying issues that the human faces, every dog helps to improve the situation of that human. From service animals helping to improve the quality of life of their owners in other ways than what meets the eye, to dogs improving the chance of allergy immunity for children, dogs impact the lives of humans for good. This project explores the way that studies have proven the worth of the dog in the home.
“Bottled” Spiro-Doubly Aromatic Trinuclear [Pd2ru]+ Complexes, Maksim Kulichenko, Nikita Fedik, Anna Monfredini, Alvaro Muñoz-Castro, Davide Balestri, Alexander I. Boldyrev, Giovanni Maestri
“Bottled” Spiro-Doubly Aromatic Trinuclear [Pd2ru]+ Complexes, Maksim Kulichenko, Nikita Fedik, Anna Monfredini, Alvaro Muñoz-Castro, Davide Balestri, Alexander I. Boldyrev, Giovanni Maestri
Chemistry and Biochemistry Faculty Publications
Following an ongoing interest in the study of transition metal complexes with exotic bonding networks, we report herein the synthesis of a family of heterobimetallic triangular clusters involving Ru and Pd atoms. These are the first examples of trinuclear complexes combining these nuclei. Structural and bonding analyses revealed both analogies and unexpected differences for these [Pd2Ru]+ complexes compared to their parent [Pd3]+ peers. Noticeably, participation of the Ru atom in the π-aromaticity of the coordinated benzene ring makes the synthesized compound the second reported example of ‘bottled’ double aromaticity. This can also be referred …
A Sandwich-Type Cluster Containing Ge@Pd3 Planar Fragment Flanked By Aromatic Nonagermanide Caps, Hong-Lei Xu, Nikolay V. Tkachenko, Zi-Chuan Wang, Wei-Xing Chen, Lei Qiao, Alvaro Muñoz-Castro, Alexander I. Boldyrev, Zhong-Ming Sun
A Sandwich-Type Cluster Containing Ge@Pd3 Planar Fragment Flanked By Aromatic Nonagermanide Caps, Hong-Lei Xu, Nikolay V. Tkachenko, Zi-Chuan Wang, Wei-Xing Chen, Lei Qiao, Alvaro Muñoz-Castro, Alexander I. Boldyrev, Zhong-Ming Sun
Chemistry and Biochemistry Faculty Publications
Sandwich-type clusters with the planar fragment containing a heterometallic sheet have remained elusive. In this work, we introduce the [K(2,2,2-crypt)]4{(Ge9)2[η6-Ge(PdPPh3)3]} complex that contains a heterometallic sandwich fragment. The title compound is structurally characterized by means of single-crystal X-ray diffraction, which reveals the presence of an unusual heteroatomic metal planar fragment Ge@Pd3. The planar fragment contains a rare formal zerovalent germanium core and a peculiar bonding mode of sp2-Ge@(PdPPh3)3 trigonal planar structure, whereas the nonagermanide fragments act as capping ligands. The …
Versatility Of The Cyano Group In Intermolecular Interactions, Steve Scheiner
Versatility Of The Cyano Group In Intermolecular Interactions, Steve Scheiner
Chemistry and Biochemistry Faculty Publications
Several cyano groups are added to an alkane, alkene, and alkyne group so as to construct a Lewis acid molecule with a positive region of electrostatic potential in the area adjoining these substituents. Although each individual cyano group produces only a weak π-hole, when two or more such groups are properly situated, they can pool their π-holes into one much more intense positive region that is located midway between them. A NH3 base is attracted to this site, where it forms a strong noncovalent bond to the Lewis acid, amounting to as much as 13.6 kcal/mol. The precise nature …
Determining The Structure And Function Of Newly Discovered Immune Systems, Ryan N. Jackson
Determining The Structure And Function Of Newly Discovered Immune Systems, Ryan N. Jackson
Funded Research Records
No abstract provided.
Effect Of Carbon Hybridization In C—F Bond As An Electron Donor In Triel Bonds, Qingqing Yang, Zongqing Chi, Qingzhong Li, Steve Scheiner
Effect Of Carbon Hybridization In C—F Bond As An Electron Donor In Triel Bonds, Qingqing Yang, Zongqing Chi, Qingzhong Li, Steve Scheiner
Chemistry and Biochemistry Faculty Publications
The ability of the F atom of HC≡CF, H2C=CHF and H3CCH2F to serve as an electron donor to the triel (Tr) atom of TrR3 in the context of a triel bond is assessed by ab initio calculations. The triel bond formed by Csp3—F is strongest, as high as 30 kcal/mol, followed by Csp2—F, and then by Csp—F whose triel bonds can be as small as 1 kcal/mol. The noncovalent bond strength diminishes in the order Tr = Al > Ga > B, consistent with the intensity of the π-hole …
Comparison Of Accelerated Solvent Extraction (Ase) And Energized Dispersive Guided Extraction (Edge) For The Analysis Of Pesticides In Leaves, Ashlie D. Kinross, Kimberly J. Hageman, William J. Doucette, Alexandria L. Foster
Comparison Of Accelerated Solvent Extraction (Ase) And Energized Dispersive Guided Extraction (Edge) For The Analysis Of Pesticides In Leaves, Ashlie D. Kinross, Kimberly J. Hageman, William J. Doucette, Alexandria L. Foster
Chemistry and Biochemistry Faculty Publications
Various techniques have been evaluated for the extraction and cleanup of pesticides from environmental samples. In this work, a Selective Pressurized Liquid Extraction (SPLE) method for pesticides was developed using a Thermo Fisher Scientific Accelerated Solvent Extraction (ASE) system. This instrument was compared to the newly introduced (2017) extraction instrument, the Energized Dispersive Guided Extraction (EDGE) system, which combines Pressurized Liquid Extraction (PLE) and dispersive Solid Phase Extraction (dSPE). We first optimized the SPLE method using the ASE instrument for pesticide extraction from alfalfa leaves using layers of Florisil and graphitized carbon black (GCB) downstream of the leaf homogenate in …
Collaborative Research: Mechanism And Target Recognition Of Protein Arginine Methyltransferases (Prmts), Joan Hevel
Collaborative Research: Mechanism And Target Recognition Of Protein Arginine Methyltransferases (Prmts), Joan Hevel
Funded Research Records
No abstract provided.
Strong Temporal Variability In Methane Fluxes From Natural Gas Well Pad Soils, Seth N. Lyman, Huy N. Q. Tran, Marc L. Mansfield, Ric Bowers, Ann Smith
Strong Temporal Variability In Methane Fluxes From Natural Gas Well Pad Soils, Seth N. Lyman, Huy N. Q. Tran, Marc L. Mansfield, Ric Bowers, Ann Smith
Bingham Research Center
We measured methane and carbon dioxide fluxes at natural gas well pad soils and undisturbed soils in the Rocky Mountain and Gulf Coast regions of the United States, including producing and gas storage wells. We collected both short-term (15 min) and multi-day (between 3 and 8), continuous measurements at 47 well pads and two undisturbed locations. Methane fluxes varied by more than an order of magnitude over periods as short as 30 min (e.g., 19–593 mg m−2 h−1 in one instance), and diurnal and seasonal variability was also significant (e.g., spring-to-fall change from 509 to 14174 mg m …
Influence Of Adjuvants On Pesticide Soil-Air Partition Coefficients: Laboratory Measurements And Predicted Effects On Volatilization, Supta Das, Kimberly J. Hageman
Influence Of Adjuvants On Pesticide Soil-Air Partition Coefficients: Laboratory Measurements And Predicted Effects On Volatilization, Supta Das, Kimberly J. Hageman
Chemistry and Biochemistry Faculty Publications
A solid-phase fugacity meter was used to measure the soil–air partition coefficients of three semivolatile pesticides (chlorpyrifos, pyrimethanil, and trifluralin) in the absence of additional adjuvants (Ksoil–air,AI), as part of commercial formulations (Ksoil–air,formulation), and as formulation mixtures with an additional spray adjuvant added (Ksoil–air,formulation+spray adjuvant). Chlorpyrifos Ksoil–air,formulation values were also measured over 15–30 °C, allowing for the change in internal energy of the phase transfer reaction (Δsoil–airU) to be calculated and compared to the Δsoil–airU for Ksoil–air,AI from the literature. Measured Ksoil–air values …
N3-Ligated Nickel(Ii) Diketonate Complexes: Synthesis, Characterization And Evaluation Of O2 Reactivity, Josiah G. D. Elsberg, Austin Peterson, Amy L. Fuller, Lisa M. Berreau
N3-Ligated Nickel(Ii) Diketonate Complexes: Synthesis, Characterization And Evaluation Of O2 Reactivity, Josiah G. D. Elsberg, Austin Peterson, Amy L. Fuller, Lisa M. Berreau
Chemistry and Biochemistry Faculty Publications
Interest in O2-dependent aliphatic carbon–carbon (C–C) bond cleavage reactions of first row divalent metal diketonate complexes stems from the desire to further understand the reaction pathways of enzymes such as DKE1 and to extract information to develop applications in organic synthesis. A recent report of O2-dependent aliphatic C–C bond cleavage at ambient temperature in Ni(II) diketonate complexes supported by a tridentate nitrogen donor ligand [(MBBP)Ni(PhC(O)CHC(O)Ph)]Cl (7-Cl; MBBP = 2,6-bis(1-methylbenzimidazol-2-yl)pyridine) in the presence of NEt3 spurred our interest in further examining the chemistry of such complexes. A series of new TERPY-ligated Ni(II) diketonate complexes of the …
Materials Design For High-Performance Organic Redox Flow Batteries And Electrocatalytic Carbon Dioxide And Nitrogen Reduction, Bo Hu
All Graduate Theses and Dissertations, Spring 1920 to Summer 2023
Nowadays, the utilization of renewable energy resources such as solar and wind energy has been realized to be a sustainable and environmentally benign strategy to alleviate the world’s severe dependency on traditional fossil fuels, and thus enables the environmental recovery and sustainable development of the economy. The massive commercialization of solar and wind energy raises the demands for advanced energy storage technologies, among which the redox flow battery has been recognized as a promising solution due to it is low cost, safe, environmentally benign, and easy to be scaled up. All vanadium redox flow battery stands for the most important …
Co Sense And Release Flavonols: Progress Toward The Development Of An Analyte Replacement Photocorm For Use In Living Cells, Marina Popova, Tatiana Soboleva, Abby D. Benninghoff, Lisa M. Berreau
Co Sense And Release Flavonols: Progress Toward The Development Of An Analyte Replacement Photocorm For Use In Living Cells, Marina Popova, Tatiana Soboleva, Abby D. Benninghoff, Lisa M. Berreau
Chemistry and Biochemistry Faculty Publications
Carbon monoxide (CO) is a signaling molecule in humans. Prior research suggests that therapeutic levels of CO can have beneficial effects in treating a variety of physiological and pathological conditions. To facilitate understanding of the role of CO in biology, molecules that enable fluorescence detection of CO in living systems have emerged as an important class of chemical tools. A key unmet challenge in this field is the development of fluorescent analyte replacement probes that replenish the CO that is consumed during detection. Herein, we report the first examples of CO sense and release molecules that involve combining a common …
Modeling The Alkaline Hydrolysis Of Diaryl Sulfate Diesters: A Mechanistic Study, Klaudia Szeler, Nicholas H. Williams, Alvan C. Hengge, Shina C. Kamerlin
Modeling The Alkaline Hydrolysis Of Diaryl Sulfate Diesters: A Mechanistic Study, Klaudia Szeler, Nicholas H. Williams, Alvan C. Hengge, Shina C. Kamerlin
Chemistry and Biochemistry Faculty Publications
Phosphate and sulfate esters have important roles in regulating cellular processes. However, while there has been substantial experimental and computational investigation of the mechanisms and the transition states involved in phosphate ester hydrolysis, there is far less work on sulfate ester hydrolysis. Here, we report a detailed computational study of the alkaline hydrolysis of diaryl sulfate diesters, using different DFT functionals as well as mixed implicit/explicit solvation with varying numbers of explicit water molecules. We consider the impact of the computational model on computed linear free-energy relationships (LFER) and the nature of the transition states (TS) involved. We obtain good …
Boron-Made N2: Realization Of A B≡B Triple Bond In The B2al3− Cluster, Nikita Fedik, Chaonan Mu, Ivan A. Popov, Wei Wang, Jie Wang, Haopeng Wang, Kit H. Bowen, Alexander I. Boldyrev, Xinxing Zhang
Boron-Made N2: Realization Of A B≡B Triple Bond In The B2al3− Cluster, Nikita Fedik, Chaonan Mu, Ivan A. Popov, Wei Wang, Jie Wang, Haopeng Wang, Kit H. Bowen, Alexander I. Boldyrev, Xinxing Zhang
Chemistry and Biochemistry Faculty Publications
Until now, all B≡B triple bonds have been achieved by adopting two ligands in the L→B≡B←L manner. Herein, we report an alternative route of designing the B≡B bonds based on the assumption that by acquiring two extra electrons, an element with the atomic number Z can have properties similar to those of the element with the atomic number Z+2. Specifically, we show that due to the electron donation from Al to B, the negatively charged B≡B kernel in the B2Al3− cluster mimics a triple N≡N bond. Comprehensive computational searches reveal that the global minimum structure of B2Al3− exhibits a …
Competition Between Intra And Intermolecular Triel Bonds. Complexes Between Naphthalene Derivatives And Neutral Or Anionic Lewis Bases, Wiktor Zierkiewicz, Mariusz Michalczyk, Steve Scheiner
Competition Between Intra And Intermolecular Triel Bonds. Complexes Between Naphthalene Derivatives And Neutral Or Anionic Lewis Bases, Wiktor Zierkiewicz, Mariusz Michalczyk, Steve Scheiner
Chemistry and Biochemistry Faculty Publications
A TrF2 group (Tr = B, Al, Ga, In, Tl) is placed on one of the α positions of naphthalene, and its ability to engage in a triel bond (TrB) with a weak (NCH) and strong (NC−) nucleophile is assessed by ab initio calculations. As a competitor, an NH2 group is placed on the neighboring Cα, from which point it forms an intramolecular TrB with the TrF2 group. The latter internal TrB reduces the intensity of the π-hole on the Tr atom, decreasing its ability to engage in a second external TrB. The …
Can Aromaticity Be A Kinetic Trap? Example Of Mechanically Interlocked Aromatic [2-5]Catenanes Built From Cyclo[18]Carbon, Nikita Fedik, Maksim Kulichenko, Dmitriy Steglenko, Alexander I. Boldyrev
Can Aromaticity Be A Kinetic Trap? Example Of Mechanically Interlocked Aromatic [2-5]Catenanes Built From Cyclo[18]Carbon, Nikita Fedik, Maksim Kulichenko, Dmitriy Steglenko, Alexander I. Boldyrev
Chemistry and Biochemistry Faculty Publications
The unusual stability of cyclo[18]carbon arising from its aromaticity might be used to provide the kinetic trapping needed in the design of interlocked systems. The kinetic barrier separating the interlocked rings and the chemically bonded complex is about 30 kcal mol−1. In addition, the rings can slide freely, which is a promising property for the design of molecular gears and motors.
Dominant Negative Effects By Inactive Spa47 Mutants Inhibit T3ss Function And Shigella Virulence, Jamie L. Burgess, Heather B. Case, R. Alan Burgess, Nicholas E. Dickenson
Dominant Negative Effects By Inactive Spa47 Mutants Inhibit T3ss Function And Shigella Virulence, Jamie L. Burgess, Heather B. Case, R. Alan Burgess, Nicholas E. Dickenson
Chemistry and Biochemistry Faculty Publications
Type three secretion systems (T3SS) are complex nano-machines that evolved to inject bacterial effector proteins directly into the cytoplasm of eukaryotic cells. Many high-priority human pathogens rely on one or more T3SSs to cause disease and evade host immune responses, underscoring the need to better understand the mechanisms through which T3SSs function and their role(s) in supporting pathogen virulence. We recently identified the Shigella protein Spa47 as an oligomerization-activated T3SS ATPase that fuels the T3SS and supports overall Shigella virulence. Here, we provide both in vitro and in vivo characterization of Spa47 oligomerization and activation in the presence and absence …