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2016

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Articles 31 - 60 of 272

Full-Text Articles in Physical Sciences and Mathematics

Using Low-Dose Radiation To Potentiate The Effect Of Induction Chemotherapy In Head And Neck Cancer: Results Of A Prospective Phase 2 Trial, Susanne M. Arnold, Mahesh Kudrimoti, Emily V. Dressler, John F. Gleason, Natalie L. Silver, William F. Regine, Joseph Valentino Oct 2016

Using Low-Dose Radiation To Potentiate The Effect Of Induction Chemotherapy In Head And Neck Cancer: Results Of A Prospective Phase 2 Trial, Susanne M. Arnold, Mahesh Kudrimoti, Emily V. Dressler, John F. Gleason, Natalie L. Silver, William F. Regine, Joseph Valentino

Internal Medicine Faculty Publications

Purpose: Low-dose fractionated radiation therapy (LDFRT) induces effective cell killing through hyperradiation sensitivity and potentiates effects of chemotherapy. We report our second investigation of LDFRT as a potentiator of the chemotherapeutic effect of induction carboplatin and paclitaxel in locally advanced squamous cell cancer of the head and neck (SCCHN).

Experimental Design: Two cycles of induction therapy were given every 21 days: paclitaxel (75 mg/m2) on days 1, 8, and 15; carboplatin (area under the curve 6) day 1; and LDFRT 50 cGy fractions (2 each on days 1, 2, 8, and 15). Objectives included primary site complete response …


Pleiotropic Effects Of Csf Levels Of Alzheimer’S Disease Proteins, Olga A. Vsevolozhskaya, Ilai Keren, David W. Fardo, Dmitri V. Zaykin Oct 2016

Pleiotropic Effects Of Csf Levels Of Alzheimer’S Disease Proteins, Olga A. Vsevolozhskaya, Ilai Keren, David W. Fardo, Dmitri V. Zaykin

Biostatistics Presentations

Cerebrospinal fluid (CSF) analytes harbor potential as diagnostic biomarkers for Alzheimer’s Disease (AD). Quantitative measures of CSF proteins comprise a set of often highly correlated endophenotypes that have previously shown promise in genetic analyses (Cruchaga et al., 2013; Kauwe et al., 2014). Pleiotropic impact of genetic variations on this set may provide additional insights into AD pathology at its earliest stages. To determine which specific endophenotypes are pleiotropic, one can employ methods based on the reverse regression of genotype on phenotypes. Recently, we proposed a method based functional linear models (Vsevolozhskaya et al, 2016) that utilizes reverse regression and simultaneously …


The Abundance Discrepancy Factor And T2 In Nebulae: Are Non-Thermal Electrons The Culprits?, Gary J. Ferland, W. J. Henney, C. R. O'Dell, M. Peimbert Oct 2016

The Abundance Discrepancy Factor And T2 In Nebulae: Are Non-Thermal Electrons The Culprits?, Gary J. Ferland, W. J. Henney, C. R. O'Dell, M. Peimbert

Physics and Astronomy Faculty Publications

We discuss recent claims that the free electrons in ionized nebulae may not have a significantly Maxwellian velocity distribution. Supra-thermal electrons, electrons with much more energy than is encountered at electron temperatures found in nebulae, may solve the t2/ADF puzzle, the observations that abundances obtained from recombination and collisionally excited lines do not agree, and that different temperature indicators give different results. These non-Maxwellian electrons can be designated by the kappa formalism. We show that the distance over which heating rates change are much longer than the distance supra-thermal electrons can travel, and that the timescale to thermalize …


Weighted-Samgsr: Combining Significance Analysis Of Microarray-Gene Set Reduction Algorithm With Pathway Topology-Based Weights To Select Relevant Genes, Suyan Tian, Howard H. Chang, Chi Wang Sep 2016

Weighted-Samgsr: Combining Significance Analysis Of Microarray-Gene Set Reduction Algorithm With Pathway Topology-Based Weights To Select Relevant Genes, Suyan Tian, Howard H. Chang, Chi Wang

Biostatistics Faculty Publications

Background: It has been demonstrated that a pathway-based feature selection method that incorporates biological information within pathways during the process of feature selection usually outperforms a gene-based feature selection algorithm in terms of predictive accuracy and stability. Significance analysis of microarray-gene set reduction algorithm (SAMGSR), an extension to a gene set analysis method with further reduction of the selected pathways to their respective core subsets, can be regarded as a pathway-based feature selection method.

Methods: In SAMGSR, whether a gene is selected is mainly determined by its expression difference between the phenotypes, and partially by the number of pathways to …


Comparative Transcriptomic Analysis Of Two Brassica Napus Near-Isogenic Lines Reveals A Network Of Genes That Influences Seed Oil Accumulation, Jingxue Wang, Sanjay Kumar Singh, Chunfang Du, Chen Li, Jianchun Fan, Sitakanta Pattanaik, Ling Yuan Sep 2016

Comparative Transcriptomic Analysis Of Two Brassica Napus Near-Isogenic Lines Reveals A Network Of Genes That Influences Seed Oil Accumulation, Jingxue Wang, Sanjay Kumar Singh, Chunfang Du, Chen Li, Jianchun Fan, Sitakanta Pattanaik, Ling Yuan

Plant and Soil Sciences Faculty Publications

Rapeseed (Brassica napus) is an important oil seed crop, providing more than 13% of the world’s supply of edible oils. An in-depth knowledge of the gene network involved in biosynthesis and accumulation of seed oil is critical for the improvement of B. napus. Using available genomic and transcriptomic resources, we identified 1,750 acyl-lipid metabolism (ALM) genes that are distributed over 19 chromosomes in the B. napus genome. B. rapa and B. oleracea, two diploid progenitors of B. napus, contributed almost equally to the ALM genes. Genome collinearity analysis demonstrated that the majority of the …


Identification Of Control Targets In Boolean Molecular Network Models Via Computational Algebra, David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Reinhard Laubenbacher Sep 2016

Identification Of Control Targets In Boolean Molecular Network Models Via Computational Algebra, David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Reinhard Laubenbacher

Mathematics Faculty Publications

Background: Many problems in biomedicine and other areas of the life sciences can be characterized as control problems, with the goal of finding strategies to change a disease or otherwise undesirable state of a biological system into another, more desirable, state through an intervention, such as a drug or other therapeutic treatment. The identification of such strategies is typically based on a mathematical model of the process to be altered through targeted control inputs. This paper focuses on processes at the molecular level that determine the state of an individual cell, involving signaling or gene regulation. The mathematical model type …


Measurement Of Elliptic Flow Of Light Nuclei At √SNn = 200, 62.4, 39, 27, 19.6, 11.5, And 7.7 Gev At The Bnl Relativistic Heavy Ion Collider, L. Adamczyk, James K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, I. Alekseev, A. Aparin, D. Arkhipkin, E. C. Aschenauer, A. Attri, G. S. Averichev, X. Bai, V. Bairathi, R. Bellwied, A. Bhasin, A. K. Bhati, P. Bhattarai, J. Bielcik, J. Bielcikova, L. C. Bland, I. G. Bordyuzhin, J. Bouchet, J. D. Brandenburg, A. V. Brandin, I. Bunzarov, J. Butterworth, H. Caines, M. Calderón De La Barca Sánchez, J. M. Campbell, D. Cebra, Renee H. Fatemi, Suvarna Ramachandran Sep 2016

Measurement Of Elliptic Flow Of Light Nuclei At √SNn = 200, 62.4, 39, 27, 19.6, 11.5, And 7.7 Gev At The Bnl Relativistic Heavy Ion Collider, L. Adamczyk, James K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, I. Alekseev, A. Aparin, D. Arkhipkin, E. C. Aschenauer, A. Attri, G. S. Averichev, X. Bai, V. Bairathi, R. Bellwied, A. Bhasin, A. K. Bhati, P. Bhattarai, J. Bielcik, J. Bielcikova, L. C. Bland, I. G. Bordyuzhin, J. Bouchet, J. D. Brandenburg, A. V. Brandin, I. Bunzarov, J. Butterworth, H. Caines, M. Calderón De La Barca Sánchez, J. M. Campbell, D. Cebra, Renee H. Fatemi, Suvarna Ramachandran

Physics and Astronomy Faculty Publications

We present measurements of second-order azimuthal anisotropy (υ2) at midrapidity (|y| < 1.0) for light nuclei d, t, 3He (for ⎷sNN = 200 GeV) in the STAR (Solenoidal Tracker at RHIC) experiment. The υ2 for these light nuclei produced in heavy-ion collisions is compared with those for p and p¯. We observe mass ordering in nuclei υ2 (pT) at low transverse momenta (pT < 2.0 GeV/c). We also find a centrality dependence of υ2 for d and . The magnitude of υ2 for t and 3He …


The Baryon Cycle At High Redshifts: Effects Of Galactic Winds On Galaxy Evolution In Overdense And Average Regions, Raphael Sadoun, Isaac Shlosman, Jun-Hwan Choi, Emilio Romano-Díaz Sep 2016

The Baryon Cycle At High Redshifts: Effects Of Galactic Winds On Galaxy Evolution In Overdense And Average Regions, Raphael Sadoun, Isaac Shlosman, Jun-Hwan Choi, Emilio Romano-Díaz

Physics and Astronomy Faculty Publications

We employ high-resolution cosmological zoom-in simulations focusing on a high-sigma peak and an average cosmological field at z ~ 6–12 in order to investigate the influence of environment and baryonic feedback on galaxy evolution in the reionization epoch. Strong feedback, e.g., galactic winds, caused by elevated star formation rates (SFRs) is expected to play an important role in this evolution. We compare different outflow prescriptions: (i) constant wind velocity (CW), (ii) variable wind scaling with galaxy properties (VW), and (iii) no outflows (NW). The overdensity leads to accelerated evolution of dark matter and baryonic structures, absent from the "normal" region, …


Vasoactivity And Vasoconstriction Changes In Cattle Related To Time Off Toxic Endophyte-Infected Tall Fescue, James L. Klotz, Glen E. Aiken, Jessica R. Bussard, Andrew P. Foote, David L. Harmon, Ben M. Goff, F. Neal Schrick, James R. Strickland Sep 2016

Vasoactivity And Vasoconstriction Changes In Cattle Related To Time Off Toxic Endophyte-Infected Tall Fescue, James L. Klotz, Glen E. Aiken, Jessica R. Bussard, Andrew P. Foote, David L. Harmon, Ben M. Goff, F. Neal Schrick, James R. Strickland

Plant and Soil Sciences Faculty Publications

Previous research has indicated that serotonergic and α-adrenergic receptors in peripheral vasculature are affected by exposure of cattle grazing toxic endophyte-infected (E+; Epichlöe coenophialia) tall fescue (Lolium arundinaceum). The objective of this experiment was to determine the period of time necessary for the vascular effects of ergot alkaloids to subside. Two experiments were conducted to investigate changes in vascular contractile response and vasoconstriction over time relative to removal from an ergot alkaloid-containing E+ tall fescue pasture. In Experiment 1, lateral saphenous vein biopsies were conducted on 21 predominantly Angus steers (357 ± 3 kg body weight) at …


From Damage To Discovery Via Virtual Unwrapping: Reading The Scroll From En-Gedi, W. Brent Seales, Clifford S. Parker, Michael Segal, Emanuel Tov, Pnina Shor, Yosef Porath Sep 2016

From Damage To Discovery Via Virtual Unwrapping: Reading The Scroll From En-Gedi, W. Brent Seales, Clifford S. Parker, Michael Segal, Emanuel Tov, Pnina Shor, Yosef Porath

Computer Science Faculty Publications

Computer imaging techniques are commonly used to preserve and share readable manuscripts, but capturing writing locked away in ancient, deteriorated documents poses an entirely different challenge. This software pipeline—referred to as “virtual unwrapping”—allows textual artifacts to be read completely and noninvasively. The systematic digital analysis of the extremely fragile En-Gedi scroll (the oldest Pentateuchal scroll in Hebrew outside of the Dead Sea Scrolls) reveals the writing hidden on its untouchable, disintegrating sheets. Our approach for recovering substantial ink-based text from a damaged object results in readable columns at such high quality that serious critical textual analysis can occur. Hence, this …


High-Velocity Bipolar Molecular Emission From An Agn Torus, Jack F. Gallimore, Moshe Elitzur, Robert Maiolino, Alessandro Marconi, Christopher P. O'Dea, Dieter Lutz, Stefi A. Baum, Robert Nikutta, C. M. V. Impellizzeri, Richard Davies, Amy E. Kimball, Eleonora Sani Sep 2016

High-Velocity Bipolar Molecular Emission From An Agn Torus, Jack F. Gallimore, Moshe Elitzur, Robert Maiolino, Alessandro Marconi, Christopher P. O'Dea, Dieter Lutz, Stefi A. Baum, Robert Nikutta, C. M. V. Impellizzeri, Richard Davies, Amy E. Kimball, Eleonora Sani

Physics and Astronomy Faculty Publications

We have detected in ALMA observations CO J = 6 → 5 emission from the nucleus of the Seyfert galaxy NGC 1068. The low-velocity (up to ±70 km s−1 relative to systemic) CO emission resolves into a 12 × 7 pc structure, roughly aligned with the nuclear radio source. Higher-velocity emission (up to ±400 km s−1) is consistent with a bipolar outflow in a direction nearly perpendicular (≃80°) to the nuclear disk. The position–velocity diagram shows that in addition to the outflow, the velocity field may also contain rotation about the disk axis. These observations provide compelling …


Grain Boundary Induced Bias Instability In Soluble Acene-Based Thin-Film Transistors, Ky V. Nguyen, Marcia M. Payne, John E. Anthony, Jung Hun Lee, Eunjoo Song, Boseok Kang, Kilwon Cho, Wi Hyoung Lee Sep 2016

Grain Boundary Induced Bias Instability In Soluble Acene-Based Thin-Film Transistors, Ky V. Nguyen, Marcia M. Payne, John E. Anthony, Jung Hun Lee, Eunjoo Song, Boseok Kang, Kilwon Cho, Wi Hyoung Lee

Chemistry Faculty Publications

Since the grain boundaries (GBs) within the semiconductor layer of organic field-effect transistors (OFETs) have a strong influence on device performance, a substantial number of studies have been devoted to controlling the crystallization characteristics of organic semiconductors. We studied the intrinsic effects of GBs within 5,11-bis(triethylsilylethynyl) anthradithiophene (TES-ADT) thin films on the electrical properties of OFETs. The GB density was easily changed by controlling nulceation event in TES-ADT thin films. When the mixing time was increased, the number of aggregates in as-spun TES-ADT thin films were increased and subsequent exposure of the films to 1,2-dichloroethane vapor led to a significant …


H-, He-Like Recombination Spectra ‒ Ii. L-Changing Collisions For He Rydberg States, Francisco Guzmán, N. R. Badnell, R. J. R. Williams, P. A. M. Van Hoof, Marios Chatzikos, Gary J. Ferland Sep 2016

H-, He-Like Recombination Spectra ‒ Ii. L-Changing Collisions For He Rydberg States, Francisco Guzmán, N. R. Badnell, R. J. R. Williams, P. A. M. Van Hoof, Marios Chatzikos, Gary J. Ferland

Physics and Astronomy Faculty Publications

Cosmological models can be constrained by determining primordial abundances. Accurate predictions of the He i spectrum are needed to determine the primordial helium abundance to a precision of < 1 per cent in order to constrain big bang nucleosynthesis models. Theoretical line emissivities at least this accurate are needed if this precision is to be achieved. In the first paper of this series, which focused on H ι, we showed that differences in l-changing collisional rate coefficients predicted by three different theories can translate into 10 per cent changes in predictions for H ι spectra. Here, we consider the more complicated case of He atoms, where low-l subshells are not energy degenerate. A criterion for deciding when the energy separation between l subshells is small enough to apply energy-degenerate collisional theories is given. Moreover, for certain conditions, the Bethe approximation originally proposed by …


The Data Reduction Pipeline For The Sdss-Iv Manga Ifu Galaxy Survey, David R. Law, Brian Cherinka, Renbin Yan, Brett H. Andrews, Matthew A. Bershady, Dmitry Bizyaev, Guillermo A. Blanc, Michael R. Blanton, Adam S. Bolton, Joel R. Brownstein, Kevin Bundy, Yanmei Chen, Niv Drory, Richard D'Souza, Hai Fu, Amy Jones, Guinevere Kauffmann, Nicholas Macdonald, Karen L. Masters, Jeffrey A. Newman, John K. Parejko, José R. Sánchez-Gallego, Sebastian F. Sánchez, David J. Schlegel, Daniel Thomas, David A. Wake, Anne-Marie Weijmans, Kyle B. Westfall, Kai Zhang Sep 2016

The Data Reduction Pipeline For The Sdss-Iv Manga Ifu Galaxy Survey, David R. Law, Brian Cherinka, Renbin Yan, Brett H. Andrews, Matthew A. Bershady, Dmitry Bizyaev, Guillermo A. Blanc, Michael R. Blanton, Adam S. Bolton, Joel R. Brownstein, Kevin Bundy, Yanmei Chen, Niv Drory, Richard D'Souza, Hai Fu, Amy Jones, Guinevere Kauffmann, Nicholas Macdonald, Karen L. Masters, Jeffrey A. Newman, John K. Parejko, José R. Sánchez-Gallego, Sebastian F. Sánchez, David J. Schlegel, Daniel Thomas, David A. Wake, Anne-Marie Weijmans, Kyle B. Westfall, Kai Zhang

Physics and Astronomy Faculty Publications

Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) is an optical fiber-bundle integral-field unit (IFU) spectroscopic survey that is one of three core programs in the fourth-generation Sloan Digital Sky Survey (SDSS-IV). With a spectral coverage of 3622–10354 Å and an average footprint of ~500 arcsec2 per IFU the scientific data products derived from MaNGA will permit exploration of the internal structure of a statistically large sample of 10,000 low-redshift galaxies in unprecedented detail. Comprising 174 individually pluggable science and calibration IFUs with a near-constant data stream, MaNGA is expected to obtain ~100 million raw-frame spectra and ~10 million …


Jet-Like Correlations With Direct-Photon And Neutral-Pion Triggers At √SNn = 200 Gev, L. Adamczyk, James K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, I. Alekseev, D. M. Anderson, A. Aparin, D. Arkhipkin, E. C. Aschenauer, Renee H. Fatemi, Suvarna Ramachandran Sep 2016

Jet-Like Correlations With Direct-Photon And Neutral-Pion Triggers At √SNn = 200 Gev, L. Adamczyk, James K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, I. Alekseev, D. M. Anderson, A. Aparin, D. Arkhipkin, E. C. Aschenauer, Renee H. Fatemi, Suvarna Ramachandran

Physics and Astronomy Faculty Publications

Azimuthal correlations of charged hadrons with direct-photon (γdir) and neutral-pion (π0) trigger particles are analyzed in central Au+Au and minimum-bias p+p collisions at in the STAR experiment. The charged-hadron per-trigger yields at mid-rapidity from central Au+Au collisions are compared with p+p collisions to quantify the suppression in Au+Au collisions. The suppression of the away-side associated-particle yields per γdir trigger is independent of the transverse momentum of the trigger particle (ptrigT), whereas the suppression is smaller at low transverse momentum of the associated charged hadrons ( …


Hydroclimatic Contrasts Over Asian Monsoon Areas And Linkages To Tropical Pacific Ssts, Hai Xu, Jianghu Lan, Enguo Sheng, Bin Liu, Keke Yu, Yuanda Ye, Zhengguo Shi, Peng Cheng, Xulong Wang, Xinying Zhou, Kevin M. Yeager Sep 2016

Hydroclimatic Contrasts Over Asian Monsoon Areas And Linkages To Tropical Pacific Ssts, Hai Xu, Jianghu Lan, Enguo Sheng, Bin Liu, Keke Yu, Yuanda Ye, Zhengguo Shi, Peng Cheng, Xulong Wang, Xinying Zhou, Kevin M. Yeager

Earth and Environmental Sciences Faculty Publications

Knowledge of spatial and temporal hydroclimatic differences is critical in understanding climatic mechanisms. Here we show striking hydroclimatic contrasts between northern and southern parts of the eastern margin of the Tibetan Plateau (ETP), and those between East Asian summer monsoon (EASM) and Indian summer monsoon (ISM) areas during the past ~2,000 years. During the Medieval Period, and the last 100 to 200 years, the southern ETP (S-ETP) area was generally dry (on average), while the northern ETP (N-ETP) area was wet. During the Little Ice Age (LIA), hydroclimate over S-ETP areas was wet, while that over N-ETP area was dry …


Skyrmions And Hall Transport, Bom Soo Kim, Alfred D. Shapere Sep 2016

Skyrmions And Hall Transport, Bom Soo Kim, Alfred D. Shapere

Physics and Astronomy Faculty Publications

We derive a generalized set of Ward identities that captures the effects of topological charge on Hall transport. The Ward identities follow from the (2+1)-dimensional momentum algebra, which includes a central extension proportional to the topological charge density. In the presence of topological objects like Skyrmions, we observe that the central term leads to a direct relation between the thermal Hall conductivity and the topological charge density. We extend this relation to incorporate the effects of a magnetic field and an electric current. The topological charge density produces a distinct signature in the electric Hall conductivity, which is identified in …


ΠN And Strangeness Sigma Terms At The Physical Point With Chiral Fermions, Yi-Bo Yang, Andrei Alexandru, Terrence Draper, Jian Liang, Keh-Fei Liu Sep 2016

ΠN And Strangeness Sigma Terms At The Physical Point With Chiral Fermions, Yi-Bo Yang, Andrei Alexandru, Terrence Draper, Jian Liang, Keh-Fei Liu

Physics and Astronomy Faculty Publications

Lattice QCD calculations with chiral fermions of the πN sigma term σπN and strangeness sigma term σπN including chiral interpolation with continuum and volume corrections are provided in this work, with the excited-state contaminations subtracted properly. We calculate the scalar matrix element for the light/strange quark directly and find σπN = 45.9(7.4)(2.8)  MeV, with the disconnected insertion part contributing 20(12)(4)%, and σπN = 40.2(11.7)(3.5)  MeV, which is somewhat smaller than σπN. The ratio of the strange/light scalar matrix elements is y = 0.09(3)(1).


Influence Of Source Credibility On Consumer Acceptance Of Genetically Modified Foods In China, Mingyang Zhang, Chao Chen, Wuyang Hu, Lijun Chen, Jintao Zhan Sep 2016

Influence Of Source Credibility On Consumer Acceptance Of Genetically Modified Foods In China, Mingyang Zhang, Chao Chen, Wuyang Hu, Lijun Chen, Jintao Zhan

Agricultural Economics Faculty Publications

This paper examines the reasoning mechanism behind the consumer acceptance of genetically modified foods (GMFs) in China, and investigates influence of source credibility on consumer acceptance of GMFs. Based on the original Persuasion Model—which was developed by Carl Hovland, an American psychologist and pioneer in the study of communication and its effect on attitudes and beliefs—we conducted a survey using multistage sampling from 1167 urban residents, which were proportionally selected from six cities in three economic regions (south, central, and north) in the Jiangsu province through face to face interviews. Mixed-process regression that could correct endogeneity and ordered probit model …


An Interactive Videogame Designed To Improve Respiratory Navigator Efficiency In Children Undergoing Cardiovascular Magnetic Resonance, Sean M. Hamlet, Christopher M. Haggerty, Jonathan D. Suever, Gregory J. Wehner, Jonathan D. Grabau, Kristin N. Andres, Moriel H. Vandsburger, David K. Powell, Vincent L. Sorrell, Brandon K. Fornwalt Sep 2016

An Interactive Videogame Designed To Improve Respiratory Navigator Efficiency In Children Undergoing Cardiovascular Magnetic Resonance, Sean M. Hamlet, Christopher M. Haggerty, Jonathan D. Suever, Gregory J. Wehner, Jonathan D. Grabau, Kristin N. Andres, Moriel H. Vandsburger, David K. Powell, Vincent L. Sorrell, Brandon K. Fornwalt

Saha Cardiovascular Research Center Faculty Publications

Background: Advanced cardiovascular magnetic resonance (CMR) acquisitions often require long scan durations that necessitate respiratory navigator gating. The tradeoff of navigator gating is reduced scan efficiency, particularly when the patient’s breathing patterns are inconsistent, as is commonly seen in children. We hypothesized that engaging pediatric participants with a navigator-controlled videogame to help control breathing patterns would improve navigator efficiency and maintain image quality.

Methods: We developed custom software that processed the Siemens respiratory navigator image in real-time during CMR and represented diaphragm position using a cartoon avatar, which was projected to the participant in the scanner as visual feedback. The …


Measurements Of DN2 And AN1: Probing The Neutron Spin Structure, D. Flay, M. Posik, D. S. Parno, Kalyan C. Allada, W. R. Armstrong, T. Averett, F. Benmokhtar, W. Bertozzi, A. Camsonne, M. Canan, G. D. Cates, C. Chen, J. -P. Chen, S. Choi, E. Chudakov, F. Cusanno, M. M. Dalton, W. Deconinck, C. W. De Jager, X. Deng, A. Deur, Chiranjib Dutta, L. El Fassi, G. B. Franklin, M. Friend, H. Gao, F. Garibaldi, S. Gilad, R. Gilman, O. Glamazdin, Ameya Suresh Kolarkar, Wolfgang Korsch Sep 2016

Measurements Of DN2 And AN1: Probing The Neutron Spin Structure, D. Flay, M. Posik, D. S. Parno, Kalyan C. Allada, W. R. Armstrong, T. Averett, F. Benmokhtar, W. Bertozzi, A. Camsonne, M. Canan, G. D. Cates, C. Chen, J. -P. Chen, S. Choi, E. Chudakov, F. Cusanno, M. M. Dalton, W. Deconinck, C. W. De Jager, X. Deng, A. Deur, Chiranjib Dutta, L. El Fassi, G. B. Franklin, M. Friend, H. Gao, F. Garibaldi, S. Gilad, R. Gilman, O. Glamazdin, Ameya Suresh Kolarkar, Wolfgang Korsch

Physics and Astronomy Faculty Publications

We report on the results of the E06-014 experiment performed at Jefferson Lab in Hall A, where a precision measurement of the twist-3 matrix element d2 of the neutron (dn2) was conducted. The quantity dn2 represents the average color Lorentz force a struck quark experiences in a deep inelastic electron scattering event off a neutron due to its interaction with the hadronizing remnants. This color force was determined from a linear combination of the third moments of the 3He spin structure functions, g1 and g2, after nuclear corrections had …


Century-Long Increasing Trend And Variability Of Dissolved Organic Carbon Export From The Mississippi River Basin Driven By Natural And Anthropogenic Forcing, Wei Ren, Hanqin Tian, Wei-Jun Cai, Steven E. Lohrenz, Charles S. Hopkinson, Wei-Jen Huang, Jia Yang, Bo Tao, Shufen Pan, Ruoying He Sep 2016

Century-Long Increasing Trend And Variability Of Dissolved Organic Carbon Export From The Mississippi River Basin Driven By Natural And Anthropogenic Forcing, Wei Ren, Hanqin Tian, Wei-Jun Cai, Steven E. Lohrenz, Charles S. Hopkinson, Wei-Jen Huang, Jia Yang, Bo Tao, Shufen Pan, Ruoying He

Plant and Soil Sciences Faculty Publications

There has been considerable debate as to how natural forcing and anthropogenic activities alter the timing and magnitude of the delivery of dissolved organic carbon (DOC) to the coastal ocean, which has ramifications for the ocean carbon budget, land-ocean interactions, and coastal life. Here we present an analysis of DOC export from the Mississippi River to the Gulf of Mexico during 1901–2010 as influenced by changes in climate, land use and management practices, atmospheric CO2, and nitrogen deposition, through the integration of observational data with a coupled hydrologic/biogeochemical land model. Model simulations show that DOC export in the …


Relating Side Chain Organization Of Pnipam With Its Conformation In Aqueous Methanol, Debashish Mukherji, Manfred Wagner, Mark D. Watson, Svenja Winzen, Tiago E. E. De Oliveira, Carlos M. Marques, Kurt Kremer Sep 2016

Relating Side Chain Organization Of Pnipam With Its Conformation In Aqueous Methanol, Debashish Mukherji, Manfred Wagner, Mark D. Watson, Svenja Winzen, Tiago E. E. De Oliveira, Carlos M. Marques, Kurt Kremer

Chemistry Faculty Publications

Combining nuclear magnetic resonance (NMR), dynamic light scattering (DLS), and μs long all-atom simulations with two million particles, we establish a delicate correlation between increased side chain organization of PNIPAm and its collapse in aqueous methanol mixtures. We find that the preferential binding of methanol with PNIPAm side chains, bridging distal monomers along the polymer backbone, results in increased organization. Furthermore, methanol–PNIPAm preferential binding is dominated by hydrogen bonding. Our findings reveal that the collapse of PNIPAm is dominated by enthalpic interactions and that the standard poor solvent (entropic) effects play no major role.


Capture And Recycle Of Industrial Co2 Emissions Using Mircoalgae, Michael H. Wilson, Daniel T. Mohler, John G. Groppo, Thomas E. Grubbs, Stephanie Kesner, E. Molly Frazar, Aubrey Shea, Czarena L. Crofcheck, Mark Crocker Sep 2016

Capture And Recycle Of Industrial Co2 Emissions Using Mircoalgae, Michael H. Wilson, Daniel T. Mohler, John G. Groppo, Thomas E. Grubbs, Stephanie Kesner, E. Molly Frazar, Aubrey Shea, Czarena L. Crofcheck, Mark Crocker

Center for Applied Energy Research Faculty and Staff Publications

A novel cyclic flow photobioreactor (PBR) for the capture and recycle of CO2 using microalgae was designed and deployed at a coal-fired power plant (Duke Energy’s East Bend Station). The PBR was operated continuously during the period May–September 2015, during which algae productivity of typically 0.1–0.2 g/(L day) was obtained. Maximum CO2 capture efficiency was achieved during peak sunlight hours, the largest recorded CO2 emission reduction corresponding to a value of 81 % (using a sparge time of 5 s/min). On average, CO2 capture efficiency during daylight hours was 44 %. The PBR at East Bend …


Methane Emissions From Global Rice Fields: Magnitude, Spatiotemporal Patterns, And Environmental Controls, Bowen Zhang, Hanqin Tian, Wei Ren, Bo Tao, Chaoqun Lu, Jia Yang, Kamaljit Banger, Shufen Pan Sep 2016

Methane Emissions From Global Rice Fields: Magnitude, Spatiotemporal Patterns, And Environmental Controls, Bowen Zhang, Hanqin Tian, Wei Ren, Bo Tao, Chaoqun Lu, Jia Yang, Kamaljit Banger, Shufen Pan

Plant and Soil Sciences Faculty Publications

Given the importance of the potential positive feedback between methane (CH4) emissions and climate change, it is critical to accurately estimate the magnitude and spatiotemporal patterns of CH4 emissions from global rice fields and better understand the underlying determinants governing the emissions. Here we used a coupled biogeochemical model in combination with satellite-derived contemporary inundation area to quantify the magnitude and spatiotemporal variation of CH4 emissions from global rice fields and attribute the environmental controls of CH4 emissions during 1901–2010. Our study estimated that CH4 emissions from global rice fields varied from 18.3 ± …


Diffuse Optical Measurements Of Head And Neck Tumor Hemodynamics For Early Prediction Of Chemoradiation Therapy Outcomes, Lixin Dong, Mahesh Kudrimoti, Daniel Irwin, Li Chen, Sameera Kumar, Yu Shang, Chong Huang, Ellis L. Johnson, Scott D. Stevens, Brent J. Shelton, Guoqiang Yu Aug 2016

Diffuse Optical Measurements Of Head And Neck Tumor Hemodynamics For Early Prediction Of Chemoradiation Therapy Outcomes, Lixin Dong, Mahesh Kudrimoti, Daniel Irwin, Li Chen, Sameera Kumar, Yu Shang, Chong Huang, Ellis L. Johnson, Scott D. Stevens, Brent J. Shelton, Guoqiang Yu

Biomedical Engineering Faculty Publications

This study used a hybrid near-infrared diffuse optical instrument to monitor tumor hemodynamic responses to chemoradiation therapy for early prediction of treatment outcomes in patients with head and neck cancer. Forty-seven patients were measured once per week to evaluate the hemodynamic status of clinically involved cervical lymph nodes as surrogates for the primary tumor response. Patients were classified into two groups: complete response (CR) (n = 29) and incomplete response (IR) (n = 18). Tumor hemodynamic responses were found to be associated with clinical outcomes (CR/IR), wherein the associations differed depending on human papillomavirus (HPV-16) status. In HPV-16 …


Left And Right Ventricular Dyssynchrony And Strains From Cardiovascular Magnetic Resonance Feature Tracking Do Not Predict Deterioration Of Ventricular Function In Patients With Repaired Tetralogy Of Fallot, Linyuan Jing, Gregory J. Wehner, Jonathan D. Suever, Richard Charnigo, Sudad Alhadad, Evan Stearns, Dimitri Mojsejenko, Christopher M. Haggerty, Kelsey Hickey, Anne Marie Valente, Tal Geva, Andrew J. Powell, Brandon K. Fornwalt Aug 2016

Left And Right Ventricular Dyssynchrony And Strains From Cardiovascular Magnetic Resonance Feature Tracking Do Not Predict Deterioration Of Ventricular Function In Patients With Repaired Tetralogy Of Fallot, Linyuan Jing, Gregory J. Wehner, Jonathan D. Suever, Richard Charnigo, Sudad Alhadad, Evan Stearns, Dimitri Mojsejenko, Christopher M. Haggerty, Kelsey Hickey, Anne Marie Valente, Tal Geva, Andrew J. Powell, Brandon K. Fornwalt

Saha Cardiovascular Research Center Faculty Publications

Background: Patients with repaired tetralogy of Fallot (rTOF) suffer from progressive ventricular dysfunction decades after their surgical repair. We hypothesized that measures of ventricular strain and dyssynchrony would predict deterioration of ventricular function in patients with rTOF.

Methods: A database search identified all patients at a single institution with rTOF who underwent cardiovascular magnetic resonance (CMR) at least twice, > 6 months apart, without intervening surgical or catheter procedures. Seven primary predictors were derived from the first CMR using a custom feature tracking algorithm: left (LV), right (RV) and inter-ventricular dyssynchrony, LV and RV peak global circumferential strains, and LV and …


Interaction-Induced Dirac Fermions From Quadratic Band Touching In Bilayer Graphene, Sumiran Pujari, Thomas C. Lang, Ganpathy Murthy, Ribhu K. Kaul Aug 2016

Interaction-Induced Dirac Fermions From Quadratic Band Touching In Bilayer Graphene, Sumiran Pujari, Thomas C. Lang, Ganpathy Murthy, Ribhu K. Kaul

Physics and Astronomy Faculty Publications

We revisit the effect of local interactions on the quadratic band touching (QBT) of the Bernal honeycomb bilayer model using renormalization group (RG) arguments and quantum Monte Carlo (QMC) simulations. We present a RG argument which predicts, contrary to previous studies, that weak interactions do not flow to strong coupling even if the free dispersion has a QBT. Instead, they generate a linear term in the dispersion, which causes the interactions to flow back to weak coupling. Consistent with this RG scenario, in unbiased QMC simulations of the Hubbard model we find compelling evidence that antiferromagnetism turns on at a …


Sdss-Iv Manga: Properties Of Galaxies With Kinematically Decoupled Stellar And Gaseous Components, Yifei Jin, Yanmei Chen, Yong Shi, C. A. Tremonti, M. A. Bershady, M. Merrifield, E. Emsellem, Hai Fu, D. Wake, K. Bundy, Lihwai Lin, M. Argudo-Fernandez, Song Huang, D. V. Stark, T. Storchi-Bergmann, D. Bizyaev, J. Brownstein, J. Chisholm, Qi Guo, Lei Hao, Jian Hu, Cheng Li, Ran Li, K. L. Masters, E. Malanushenko, Kaike Pan, R. A. Riffel, A. Roman-Lopes, A. Simmons, D. Thomas, Renbin Yan Aug 2016

Sdss-Iv Manga: Properties Of Galaxies With Kinematically Decoupled Stellar And Gaseous Components, Yifei Jin, Yanmei Chen, Yong Shi, C. A. Tremonti, M. A. Bershady, M. Merrifield, E. Emsellem, Hai Fu, D. Wake, K. Bundy, Lihwai Lin, M. Argudo-Fernandez, Song Huang, D. V. Stark, T. Storchi-Bergmann, D. Bizyaev, J. Brownstein, J. Chisholm, Qi Guo, Lei Hao, Jian Hu, Cheng Li, Ran Li, K. L. Masters, E. Malanushenko, Kaike Pan, R. A. Riffel, A. Roman-Lopes, A. Simmons, D. Thomas, Renbin Yan

Physics and Astronomy Faculty Publications

We study the properties of 66 galaxies with kinematically misaligned gas and stars from MaNGA survey. The fraction of kinematically misaligned galaxies varies with galaxy physical parameters, i.e. M*, SFR and sSFR. According to their sSFR, we further classify these 66 galaxies into three categories, 10 star-forming, 26 ‘Green Valley’ and 30 quiescent ones. The properties of different types of kinematically misaligned galaxies are different in that the star-forming ones have positive gradient in Dn4000 and higher gas-phase metallicity, while the green valley/quiescent ones have negative Dn4000 gradients and lower gas-phase metallicity on average. …


Beam-Energy Dependence Of Charge Balance Functions From Au+Au Collisions At Energies Available At The Bnl Relativistic Heavy Ion Collider, L. Adamczyk, James K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, I. Alekseev, J. Alford, A. Aparin, D. Arkhipkin, E. C. Aschenauer, G. S. Averichev, A. Banerjee, R. Bellwied, A. Bhasin, A. K. Bhati, P. Bhattarai, J. Bielcik, J. Bielcikova, L. C. Bland, I. G. Bordyuzhin, J. Bouchet, A. V. Brandin, I. Bunzarov, T. P. Burton, J. Butterworth, H. Caines, M. Calderón De La Barca Sánchez, J. M. Campbell, D. Cebra, M. C. Cervantes, Renee H. Fatemi, Suvarna Ramachandran Aug 2016

Beam-Energy Dependence Of Charge Balance Functions From Au+Au Collisions At Energies Available At The Bnl Relativistic Heavy Ion Collider, L. Adamczyk, James K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, I. Alekseev, J. Alford, A. Aparin, D. Arkhipkin, E. C. Aschenauer, G. S. Averichev, A. Banerjee, R. Bellwied, A. Bhasin, A. K. Bhati, P. Bhattarai, J. Bielcik, J. Bielcikova, L. C. Bland, I. G. Bordyuzhin, J. Bouchet, A. V. Brandin, I. Bunzarov, T. P. Burton, J. Butterworth, H. Caines, M. Calderón De La Barca Sánchez, J. M. Campbell, D. Cebra, M. C. Cervantes, Renee H. Fatemi, Suvarna Ramachandran

Physics and Astronomy Faculty Publications

Balance functions have been measured in terms of relative pseudorapidity (Δη) for charged particle pairs at the BNL Relativistic Heavy Ion Collider from Au + Au collisions at √sNN = 7.7GeV to 200 GeV using the STAR detector. These results are compared with balance functions measured at the CERN Large Hadron Collider from Pb + Pb collisions at √sNN = 2.76 TeV by the ALICE Collaboration. The width of the balance function decreases as the collisions become more central and as the beam energy is increased. In contrast, the widths of the balance functions …