Physical Sciences and Mathematics Commons^™

Nucleotide Polymorphism And Copy Number Variant Detection Using Exome Capture And Next-Generation Sequencing In The Polyploid Grass Panicum Virgatum, Joseph Evans, Jeongwoon Kim, Kevin L. Childs, Briaenne Vaillancourt, Emily Crisovan, Aruna Nandety, Daniel J. Gerhardt, Todd A. Richmond, Jeffery A. Jeddeloh, Shawn M. Kaeppler, Michael D. Casler, C Robin Buell

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Switchgrass (Panicum virgatum) is a polyploid, outcrossing grass species native to North America and has recently been recognized as a potential biofuel feedstock crop. Significant phenotypic variation including ploidy is present across the two primary ecotypes of switchgrass, referred to as upland and lowland switchgrass. The tetraploid switchgrass genome is approximately 1400 Mbp, split between two subgenomes, with significant repetitive sequence content limiting the efficiency of re-sequencing approaches for determining genome diversity. To characterize genetic diversity in upland and lowland switchgrass as a first step in linking genotype to phenotype, we designed an exome capture probe set based on transcript …

Predicting Phosphorus Dynamics In Complex Terrains Using A Variable Source Area Hydrology Model, Amy S. Collick, Daniel R. Fuka, Peter J.A. Kleinman, Anthony R. Buda, Jennifer L. Weld, Mike J. White, Tamie L. Veith, Ray B. Bryant, Carl H. Bolster, Zachary M. Easton

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Phosphorus (P) loss from agricultural watersheds has long been a critical water quality problem, the control of which has been the focus of considerable research and investment. Preventing P loss depends on accurately representing the hydrological and chemical processes governing P mobilization and transport. The Soil and Water Assessment Tool (SWAT) is a watershed model commonly used to predict run-off and non-point source pollution transport. SWAT simulates run-off employing either the curve number (CN) or the Green and Ampt methods, both assume infiltration-excess run-off, although shallow soils underlain by a restricting layer commonly generate saturation-excess run-off from variable source areas …

Preliminary Effects Of Fertilization On Ecochemical Soil Condition In Mature Spruce Stands Experiencing Dieback In The Beskid Śla̧Ski And Żywiecki Mountains, Poland, Stanisław Małek, Kazimierz Januszek, William S. Keeton, Józef Barszcz, Marek Kroczek, Ewa Błońska, Tomasz Wanic

Rubenstein School of Environment and Natural Resources Faculty Publications

In recent years, there has been the phenomena of spruce dieback in Europe. Significant areas of spruce low mortality now cover both sides of the Polish southern border. We evaluated ecochemical parameters influencing the heavy dieback occurring in mature spruce stands in the Polish Carpathian Mountains. Dolomite, magnesite and serpentinite fertilizers were applied to experimental plots located in 100-year-old stands in the autumn of 2008. The experimental plots were located in the mid-elevational forest zone (900-950 m) on two nappes of the flysch Carpathians: Magura (Ujsoły Forest District) and Silesian (Wisła Forest District). The saturation of the studied soils demonstrates …

Considering Vermont's Future In A Changing Climate: The First Vermont Climate Assessment, Gillian L. Galford, Ann Hoogenboom, Sam Carlson, Sarah Ford, Julie Nash, Elizabeth Palchak, Sarah Pears, Kristen Underwood, Daniel V. Baker

Rubenstein School of Environment and Natural Resources Faculty Publications

The Vermont Climate Assessment (VCA) paints a vivid picture of a changing climate in Vermont and calls for immediate strategic planning to sustain the social, economic and environmental fabric of our state. The VCA is the first state-scale climate assessment in the country and speaks directly to the impacts of climate change as they pertain to our rural towns, cities and communities, including impacts on Vermont tourism and recreation, agriculture, natural resources and energy.

Governing Agriculture-Forest Landscapes To Achieve Climate Change Mitigation, Arun Agrawal, E. Wollenberg, L. Persha

Rubenstein School of Environment and Natural Resources Faculty Publications

This introduction to the special section on "Governing Agriculture-Forest Landscapes to Achieve Climate Change Mitigation" reviews external interventions to improve forest conditions and reduce deforestation, and by extension, influence carbon storage in agriculture-forest landscapes. The review is based on a careful survey of 123 cases of project-based and policy interventions to influence land use and forest cover outcomes. We propose that outcomes of interventions can be explained in terms of rights, incentives, and technologies related to land use and apply this framework to examine 12 types of interventions in agriculture-forest landscapes. The analysis of the identified 123 cases raises concerns …

Soil Penetrometer, David A. Bainbridge

David A Bainbridge

A simple easy to build impact soil penetrometer can provide very useful information on soil strength. This can be very important for restoration planning and management of soils in agriculture and forestry.

Soil Solarization, David A. Bainbridge

David A Bainbridge

Soil solarization makes use of the energy of the sun to heat soil and kill weeds and pathogens. Single, double, or bubblepack plastic and be used to increase soil temperature. Multiple growth benefits are often realized.

Opportunities For Energy Crop Production Based On Subfield Scale Distribution Of Profitability, Ian J. Bonner, Kara G. Cafferty, David J. Muth, Mark D. Tomer, David E. James, Sarah A. Porter, Douglas L. Karlen

David J. Muth

Incorporation of dedicated herbaceous energy crops into row crop landscapes is a promising means to supply an expanding biofuel industry while benefiting soil and water quality and increasing biodiversity. Despite these positive traits, energy crops remain largely unaccepted due to concerns over their practicality and cost of implementation. This paper presents a case study for Hardin County, Iowa, to demonstrate how subfield decision making can be used to target candidate areas for conversion to energy crop production. Estimates of variability in row crop production at a subfield level are used to model the economic performance of corn (Zea mays L.) …

Wetland Issues Affecting Waterfowl Conservation In North America, Heath M. Hagy, Scott C. Yaich, John W. Simpson, Eduardo Carrera, David A. Haukos, W.Carter Johnson, Charles R. Loesch, Fritz A. Reid, Scott E. Stephens, Ralph W. Tiner, Brett A. Werner, Greg S. Yarris

Natural Resource Management Faculty Publications

This paper summarises discussions by invited speakers during a special session at the 6th North American Duck Symposium on wetland issues that affect waterfowl, highlighting current ecosystem challenges and opportunities for the conservation of waterfowl in North America. Climate change, invasive species, U.S. agricultural policy (which can encourage wetland drainage and the expansion of row-crop agriculture into grasslands), cost and competition for water rights, and wetland management for non-waterfowl species were all considered to pose significant threats to waterfowl populations in the near future. Waterfowl populations were found to be faced with significant threats in several regions, including: the Central …

Paul Faulstich’S Reflective Review Of Susan A. Phillips’ Essay, Paul Faulstich

Pitzer Faculty Publications and Research

Paul Faulstich's review of Susan A. Phillips' essay titled, "Huerta del Valle: A New Nonprofit in a Neglected Landscape".

Effects Of Cerium Oxide Nanoparticles In Cereals: Insights Into The Toxicity Mechanisms And Macromolecular Modifications, Cyren Mendoza Rico

Open Access Theses & Dissertations

Despite the inundation of studies on the interaction of engineered nanomaterials (ENMs) with plants, investigations involving complete life cycle (i.e from seedling establishment to full maturity) are still lacking. Assessments on the nutritional value of plants cultivated to full maturity in ENMs-treated soil are also missing. Cerium oxide nanoparticles (nCeO2) have significant interactions with plants; however, there are no life cycle studies yet on their implications in cereals like rice (Oryza sativa L.), wheat (Triticum aestivum L.), and barley (Hordeum vulgare L.). These cereals are globally important crops that support the economic activity, and nutritional and health needs of billions …

Shade Coffee: Update On A Disappearing Refuge For Biodiversity, Shalene Jha, Christopher M. Bacon, Stacy M. Philpott, V. Ernesto Méndez, Peter Läderach, Robert A. Rice

College of Agriculture and Life Sciences Faculty Publications

In the past three decades, coffee cultivation has gained widespread attention for its crucial role in supporting local and global biodiversity. In this synthetic Overview, we present newly gathered data that summarize how global patterns in coffee distribution and shade vegetation have changed and discuss implications for biodiversity, ecosystem services, and livelihoods. Although overall cultivated coffee area has decreased by 8% since 1990, coffee production and agricultural intensification have increased in many places and shifted globally, with production expanding in Asia while contracting in Africa. Ecosystem services such as pollination, pest control, climate regulation, and nutrient sequestration are generally greater …

Boron Nutrition Of Burley And Dark Tobacco, Laura Ann Frakes Mitchell

Theses and Dissertations--Plant and Soil Sciences

The incidences of suspected Boron (B) deficiency have increased recently in Kentucky tobacco fields, potentially due to recent changes in management practices. The symptoms observed in the field include; hollow stalk, stunted growth, deformed or no bud formation, small slits on the lower leaf midrib and uncontrollable breaking of the midrib approximately two inches from the stalk. B is a micronutrient tobacco needs in minute amounts, however excessive additions of B could cause toxicity. The objectives of this work were to 1) establish critical points for B sufficiency, 2) describe and define B deficiency and toxicity symptoms and 3) develop …

The Effects That Liquid And Solid Cattle Manure Have On The Water Quality Of Drainage Ditches In Putnam County, Ohio, Janelle Horstman

Honors Projects

Lake Erie has experienced harmful algal blooms with increased frequency since the mid-1990s due to excess nutrients from Rivers, such as the Maumee River, and largely agricultural watersheds. Nonpoint source pollution from agriculture contributes to eutrophication, algal blooms, and the degradation of water quality. This creates stress on aquatic fauna, reduced aesthetic quality, odor, and limits of the water for usage of drinking, recreation, and industry. This research paper asks what the contributions of having access to manure application records, soil records, and information about antibiotics have on what is known about manure management and antibiotic resistance, which has been …

Home Vegetable Gardening In Kentucky, Richard Durham, Shubin Saha, John Strang, Mark A. Williams, Shawn Wright, Ricardo Bessin, Kenneth W. Seebold, Nicole Ward

Agriculture and Natural Resources Publications

Before You Begin

Every aspiring gardener should follow seven steps to have a successful gardening season:

1. Plan your garden on paper before you begin.
2. Select a good gardening site that is:
   a. in full sun for at least eight hours each day,
   b. relatively level,
   c. well‑drained,
   d. close to a water source,
   e. not shaded.
3. Prepare the soil properly and add fertilizer and lime according to soil test recommendations.
4. Plan only as large a garden as you can easily maintain. Beginning gardeners often overplant, and then they fail because they cannot keep up with the tasks required. Weeds and …

Carbon Farming In Relation To Western Australian Agriculture, Robert Sudmeyer, Jackson Parker, Tanmoy Nath, Ananda Ghose

Bulletins 4000 -

Carbon farming activities need to return multiple economic and environmental co-benefits to be attractive to land managers. This bulletin summarises concepts underlying carbon farming, how Australia accounts for greenhouse gas emissions and the potential for Western Australian land managers to participate in, and benefit from, carbon farming.

Fusarium Head Blight Resistance And Agronomic Performance In Soft Red Winter Wheat Populations, Daniela Sarti Dvorjak

Theses and Dissertations--Plant and Soil Sciences

Fusarium head blight (FHB), caused by Fusarium graminearum Schwabe [telomorph: Gibberella zeae Schwein.(Petch)], is recognized as one of the most destructive diseases of wheat (Triticum aestivum L. and T. durum L.) and barley (Hordeum vulgare L.) worldwide. Breeding for FHB resistance must be accompanied by selection for desirable agronomic traits. Donor parents with two FHB resistance quantitative trait loci (QTL) Fhb1 (chromosome 3BS) and QFhs.nau-2DL (chromosome 2DL) were crossed to four adapted SRW wheat lines to generate backcross and forward cross progeny. F₂ individuals were genotyped and assigned to 4 different groups according to presence/ absence of …

Exposure Of Feral Swine (Sus Scrofa) In The United States To Selected Pathogens, John A. Baroch, Carl A. Gagnon, Sonia Lacouture, Marcelo Gottschalk

United States Department of Agriculture Wildlife Services: Staff Publications

Feral swine (Sus scrofa) are widely distributed in the United States. In 2011 and 2012, serum samples and tonsils were recovered from 162 and 37 feral swine, respectively, in the US to evaluate exposure to important swine endemic pathogens. Antibodies against porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circovirus type 2 (PCV2) were found in 2.5% and 25.3% of tested sera, respectively. Positive serological reactions against Mycoplasma hyopneumoniae and Actinobacillus pleuropneumoniae have been detected in 19.7% and 69.7% of animals. More than 15% of animals presented antibodies against these 2 pathogens simultaneously. Most animals were also seropositive for …

Opportunities For Energy Crop Production Based On Subfield Scale Distribution Of Profitability, Ian J. Bonner, Kara G. Cafferty, David J. Muth, Mark D. Tomer, David E. James, Sarah A. Porter, Douglas L. Karlen

Douglas L Karlen

Incorporation of dedicated herbaceous energy crops into row crop landscapes is a promising means to supply an expanding biofuel industry while benefiting soil and water quality and increasing biodiversity. Despite these positive traits, energy crops remain largely unaccepted due to concerns over their practicality and cost of implementation. This paper presents a case study for Hardin County, Iowa, to demonstrate how subfield decision making can be used to target candidate areas for conversion to energy crop production. Estimates of variability in row crop production at a subfield level are used to model the economic performance of corn (Zea mays L.) …

U.S. Drought Monitor, December 31, 2013, Matthew Rosencrans

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 31, 2013 (12/31/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

U.S. Drought Monitor, December 24, 2013, Matthew Rosencrans

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 24, 2013 (12/24/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Hay, Cattle, Winter wheat.

U.S. Drought Monitor, December 17, 2013, Mark D. Svoboda

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 17, 2013 (12/17/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

U.S. Drought Monitor, December 10, 2013, Michael J. Brewer

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 10, 2013 (12/10/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

U.S. Drought Monitor, December 3, 2013, Michael J. Brewer

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for December 3, 2013 (12/3/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

A Survey Of Heavy Metals In Water, Soil And The Surrounding Plants In The Lower Rio Grande Valley, Erving W. Morelius

Theses and Dissertations - UTB/UTPA

Heavy metal pollution of the environment in recent years has become a major issue of importance for both human and environmental health. Samples were investigated for the potential pollution of the area as it is a vital produce producing area. During the study plant, soil and water samples were collected from the Donna Reservoir and Canal System to test the concentration of various heavy metals. The heavy metals tested included both potentially toxic and micronutrients in the samples which included arsenic, cadmium, chromium, copper, iron, lead, nickel and sulfur. During the study, a sixty day sampling period was used to …

Hydrogeology Of The Little River Animal Agriculture Environmental Research Unit And Impacts Of Dairy Operations On Groundwater, Robert Wesley Hunter

Masters Theses

This thesis describes the development of an integrated hydrogeologic/hydrologic site assessment and groundwater/surface water quality monitoring program at the University of Tennessee – Little River Dairy Farm, located near Townsend, TN. Hydrologic/hydrogeologic investigations of streams and groundwater at the site have been underway for more than 5 years, and these are expected to provide background data for assessing impacts of dairy wastes. The lower half of the ~180 ha site consists of low-relief fields used for row crops, which are underlain by 4 – 9 m of alluvial deposits on top of black shale or limestone that include sinkhole features. …

Ogden College Of Science & Engineering Newsletter (Winter 2013), Cheryl Stevens, Dean

Ogden College of Science & Engineering Publications

No abstract provided.

U.S. Drought Monitor, November 26, 2013, Richard R. Heim Jr.

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for November 26, 2013 (11/26/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

U.S. Drought Monitor, November 19, 2013, Richard R. Heim Jr.

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for November 19, 2013 (11/19/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.

U.S. Drought Monitor, November 12, 2013, David Simeral

United States Agricultural Commodities in Drought Archive

Drought map of U.S. for November 12, 2013 (11/12/13) plus: U.S. crop areas experiencing drought (map), Approximate percentage of crop located in drought, by state (bar graph), Percent of crop area located in drought, past 52 weeks (line graph) for: Corn, Soybeans, Hay, Cattle, Winter wheat.