Marine Biology Commons^™

Improvement Of A Low-Cost Diy Wave Gauge, Matthew F. Virden, Nigel A. Temple, Bret M. Webb, Eric L. Sparks

The Journal of Extension

The impacts of waves on shorelines and nearshore ecosystems has highlighted the need for extension and other environmental professionals to have access to accurate and affordable wave measurements. The development of a low-cost DIY wave gauge improved the accessibility of these measurements; however, the original design was limited in battery life. Here, an improved version of the low-cost DIY wave gauge, the DIY Feather Wave Gauge, is presented with the same performance, longer battery life, smaller design, and cheaper cost along with tutorials, parts lists, and other resources. This new gauge has been used to improve shoreline management recommendations.

Determination Of Atlantic Shortfin Mako Shark (Isurus Oxyrinchus) Population Genetic Structure And Comparison Of Mitogenomic Markers, Marissa Mehlrose

All HCAS Student Capstones, Theses, and Dissertations

This study provides the first genomics-level, population structure and genetic diversity assessment of the shortfin mako (Isurus oxyrinchus) shark. The assessments were based on mitogenome sequences from makos distributed throughout the Atlantic Ocean, with Pacific mako mitogenomes used as a comparative outgroup. In addition to complete mitogenome-based analyses, I assessed individual mitochondrial coding gene and non-coding (Control Region) sequences for their comparative resolution properties as markers for revealing matrilineal population structure and genetic diversity. Sequencing of 125 makos in the western and eastern Atlantic across northern and southern hemispheres yielded 92 complete mitogenomes (16,698-16,702 bp) and 33 partial …

Length-Based Risk Analysis Of Management Options For The Southern Florida Usa Multispecies Coral Reef Fish Fishery, Jerald Ault, Steven G. Smith, Matthew W. Johnson, Laura Jay W. Grove, James A. Bohnsack, Gerard T. Dinardo, Caroline Mclaughlin, Nelson M. Ehrhardt, Vanessa Mcdonough, Michael P. Seki, Steven Miller, Jiangang Luo, Jeremiah Blondeau, Michael P. Crosby, Glenn Simpson, Mark E. Monaco, Clayton G. Pollock, Michael W. Feeley, Alejandro Acosta

Marine & Environmental Sciences Faculty Articles

Exploitation impacts and management options for 15 coral reef fish species central to the commercial and recreational fisheries of the southern Florida USA coral reef ecosystem were evaluated using a length-based risk analysis (LBRA) framework. Population abundance-at-length composition data were obtained from several regional federal-state sampling programs. These and updated life history demographic data were integrated into a length-based numerical cohort model to generate LBRA fishery sustainability metrics from a probabilistic perspective. Three of five groupers, eight of eight snappers, and two of two grunts were below the 40% spawning potential ratio (SPR) stock sustainability minimum; ten of these …

Ecological Risk Assessment For The Marine Aquarium Fish Resource, Kimberley Smith, Amelia Bissell, Carly Bruce

Fisheries research reports

In November 2021, the Department of Primary Industries and Regional Development convened an Ecological Risk Assessment (ERA) of the Western Australian fisheries that access the Marine Aquarium Fish Resource. ERAs are conducted by the Department as part of its Ecosystem-Based Fisheries Management framework. Outputs of this ERA will inform future versions of the Harvest Strategy for the Resource. Additionally, this ERA is a requirement of the Wildlife Trade Operation approval for the Marine Aquarium Fish Managed Fishery (MAFMF).

Ecological impacts of the MAFMF, which is the only commercial fishery that targets the Resource, and other extractive sectors that access the …

The Risk Of Multiple Anthropogenic And Climate Change Threats Must Be Considered For Continental Scale Conservation And Management Of Seagrass Habitat, Kathryn Mcmahon, Kieryn Kilminster, Robert Canto, Chris Roelfsema, Mitchell Lyons, Gary A. Kendrick, Michelle Waycott, James Udy

Research outputs 2022 to 2026

Globally marine-terrestrial interfaces are highly impacted due to a range of human pressures. Seagrass habitats exist in the shallow marine waters of this interface, have significant values and are impacted by a range of pressures. Cumulative risk analysis is widely used to identify risk from multiple threats and assist in prioritizing management actions. This study conducted a cumulative risk analysis of seagrass habitat associated with the Australian continent to support management actions. We developed a spatially explicit risk model based on a database of threats to coastal aquatic habitat in Australia, spanning 35,000 km of coastline. Risk hotspots were identified …

Stepping Stones Towards Antarctica: Switch To Southern Spawning Grounds Explains An Abrupt Range Shift In Krill, Angus Atkinson, Simeon L. Hill, (...), Deborah K. Steinberg, Et Al

VIMS Articles

Poleward range shifts are a global-scale response to warming, but these vary greatly among taxa and are hard to predict for individual species, localized regions or over shorter (years to decadal) timescales. Moving poleward might be easier in the Arctic than in the Southern Ocean, where evidence for range shifts is sparse and contradictory. Here, we compiled a database of larval Antarctic krill, Euphausia superba and, together with an adult database, it showed how their range shift is out of step with the pace of warming. During a 70-year period of rapid warming (1920s–1990s), distribution centres of both larvae and …

Historical Ecology Of The San Diego Sport Fishery: Catch Composition, Species Trends, And Fishing Effort From 1959 To 2011, Rebecca Schwartz Lesberg

Theses

Like ocean systems around the world, species targeted by the San Diego sportfishery are subject to myriad threats from human activity, with several species already showing documented decline. However, long-term fisheries datasets are often lacking, limiting natural resource managers’ ability to appropriately manage these ecologically and economically important species. Therefore, this study used daily reports published in two Southern California newspapers to examine changes in catch composition, effort, and catch per unit effort (CPUE) from 1959-2011 for the San Diego commercial passenger fishing vessel (CPFV) sportfishery. This study then tested the relationship between those patterns and three large scale oceanographic …

Examining The Northern Shrimp Fishery In A Changing Gulf Of Maine, Ashley N. Charleson

Electronic Theses and Dissertations

Northern Shrimp (Pandalus borealis) once supported a key commercial fishery in the State of Maine. Since its closure in 2013, the stock has remained in a particularly vulnerable state following recruitment failure, overfishing, and rising water temperatures. Furthermore, without this source of supplemental income, local fishermen have also experienced financial stress following unstable fishing conditions in other fisheries. The collective goal of this research project was to assess factors impacting the feasibility of reopening and maintaining this vulnerable winter fishery. These goals are addressed over 4 chapters. Chapter two offers insight regarding what is most often omitted from the regulatory …

Pismo Clams (Tivela Stultorum) In Califorina: Population Status, Habitat Associations, Reproduction, And Growth, Alexandria R. Marquardt

Master's Theses

Marine shellfish play a vital role in intertidal ecosystems and coastal communities, but many of these fisheries are small-scale and lack the necessary monitoring to ensure long-term sustainability. Effective management often requires information on key demographic parameters, such as population status, reproduction and growth. Pismo clams (Tivela stultorum) are a culturally important and iconic species in California, which supported a thriving commercial and recreational fishery throughout much of the 1900’s. However, Pismo clam populations have declined statewide in recent decades and are attributed to human harvest and predation by California sea otters (Enhydra lutris); However, no …

Spatial And Seasonal Differences In The Top Predators Of Easter Island: Essential Data For Implementing The New Rapa Nui Multiple‐Uses Marine Protected Area, Naiti A. Morales, Erin E. Easton, Alan M. Friedlander, Euan S. Harvey, Rodrigo Garcia, Carlos F. Gaymer

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

1. Reef fishes are an important component of marine biodiversity, and changes in the composition of the assemblage structure may indicate ecological, climatic, or anthropogenic disturbances. To examine spatial differences in the reef fish assemblage structure around Easter Island, eight sites were sampled during autumn and summer 2016–2017 with baited remote underwater video systems.
2. To determine seasonal changes, quarterly (seasonal) sampling was conducted at five of those eight sites. Fifteen pelagic species of fishes were recorded during this study, some of which have not previously been recorded in scuba surveys, including the Galapagos shark (Carcharhinus galapagensis, Snodgrass & Heller, …

A Review Of The Global Commercial Cephalopod Fishery, With A Focus On Apparent Expansion, Changing Environments, And Management, Corey Clark

HCNSO Student Capstones

Cephalopods are both important predators and prey in many marine environments and important fishery resources in many countries. The global fishery has expanded almost continuously from landings of 580,000 metric tonnes in 1950 to over 4 m.t. in 2007. Cephalopods are ecological opportunists with highly plastic biological characteristics and varied population dynamics. Nearly all commercially harvested species are short-lived and can reproduce quickly, enabling them to evolve more rapidly under high selection pressure relative to many fish competitors and predators. As a result, they may have the biological means to be successful under conditions of long-term global climate change. This …

An Assessment Of Sea Scallop Abundance And Distribution In Georges Bank Closed Area Ii And Surrounds : Final Report, David Rudders, Sally Roman

Reports

For the sea scallop, Placopecten magellanicus, the concepts of space and time have emerged as the basis of an effective management tool. The strategy of closing or limiting activities in certain areas for specific lengths of time has gained support as a method to conserve and enhance the scallop resource. In the last decade, rotational area management has provided a mechanism to protect juvenile scallops from fishing mortality by closing areas based upon scallop abundance and age distribution. Approximately half of the sea scallop industry’s current annual landings come from areas under this rotational harvest strategy. While this represents a …

Biological Impacts Of Underwater Noise From Vessels, Kathy Heise

Salish Sea Ecosystem Conference

No abstract provided.

Assessment Of Floodplain Condition Across Puget Sound: An Emerging Tool For Tracking Investments And Communicating Status, Jennifer Burke, Colin Hume, Ilon Logan, Scott Mckinney

Salish Sea Ecosystem Conference

Floodplains are some of the most economically and ecologically vital lands of Puget Sound but also some of the most impaired as well. Investments at the local and regional level aim to improve aquatic and terrestrial habitat, reduce flood risk, and protect economically important lands. However, the condition and status of Puget Sound floodplains is poorly quantified in a consistent manner across the 17 major watersheds, hindering strategic investments and planning. The Puget Sound Partnership and Washington Department of Ecology are developing an assessment of floodplain condition and status for a Sound-wide watershed-scale floodplain monitoring effort using spatial data and …

Nitrogen Inventory In The Nooksack-Fraser Transboundary Watershed, Jiajia Lin, Jana Compton, Jill Baron, Chris Clark, Donna Schwede, Shabtai Bittman, David Hooper, Barb Carey, Peter Homann, Hanna Winter, Peter Kiffney, Nichole Embertson, Heather Mackay, Robert Black, Gary Bahr

Salish Sea Ecosystem Conference

The Nooksack-Fraser transboundary area (2639 km2) is home to communities with a strong base in farming, fisheries and outdoor recreation. Water quality issues impact parts of this area, where sewage effluent and animal waste are potential sources of both fecal coliform bacteria (FCB) and nitrogen (N) in the environment. Excessive nitrogen loading can lead to eutrophication in coastal areas, and nitrate contamination of groundwater. The Nooksack-Fraser Transboundary Nitrogen (NFT-N) project was developed to determine the sources and fates of N in the watershed using data on energy use, transportation, fertilization, wastewater treatment plants, livestock operations, wildlife and more. This project …

A Framework For Incorporating The Toxicity Of Pesticide Mixtures Into Ecological Risk Assessments, Cathy Laetz, David Hugh Baldwin, Tony Hawkes, Scott A. Hecht, Nathaniel L. Scholz

Salish Sea Ecosystem Conference

Pesticides are widely used throughout the Puget Sound region and are frequently detected as complex mixtures in aquatic habitats. As a result, pesticide mixture toxicity is an important component of risk assessments performed within the Salish Sea region. Here we describe a process for assessing toxicity of three categories of pesticide mixtures; formulated products (one product containing multiple active ingredients), tank mixes (multiple pesticides applied simultaneously), and environmental mixtures (resulting from unrelated pesticide use over the landscape). Mixtures were assumed to be either dose-additive or response-additive, depending on the modes of action of the individual pesticide components. Toxicity estimates utilized …

Noaa Rockfish Recovery Management And Research In The Salish Sea, Washington, James R. (James Robert) Selleck, Dan Tonnes

Salish Sea Ecosystem Conference

Rockfish are a long-lived species group that provide an important function for the food web dynamics in the Salish Sea, as both a mid-level trophic predator and important prey source, and they hold cultural significance to the region. Rockfish are comprised of over 25 different species locally, and over 60 species from California to Alaska. Many species experienced declines since the 1980’s, and two species are listed in the Salish Sea under ESA as threatened (yelloweye) or endangered (Bocaccio). Different species occupy a range of habitat types, from deep-water rock piles and hard bottom substrate, to nearshore kelp forests and …

The Spatial Context Of “Winning” In Mpa Network Design: Location Matters, Andrew S. Kough, Claire B. Paris, Mark J. Butler Iv

Biological Sciences Faculty Publications

(First paragraph) Chollett et al. (2017) make the case that a local network of marine protected areas (MPAs) enhances fisheries for Caribbean spiny lobster (Panulirus argus) off the coast of Honduras. However, their simulation focused on one ecoregion where self-recruitment is predicted to be among the highest in the Caribbean (Cowen, Paris, & Srinivasan, 2006). The shallow banks and scattered cays of the Honduran-Nicaraguan Rise, separating the Cayman and Colombian basins, create an obstacle to the powerful southern Caribbean jet (Richardson, 2005), fostering an ideal location for topographically steered eddies and larval retention. Local management,whether based on traditional …

Thirty Years Of Research On Crown-Of-Thorns Starfish (1986–2016): Scientific Advances And Emerging Opportunities, Morgan S. Pratchett, Clemon F. Caballes, Jennifer C. Wilmes, Samuel Matthews, Camille Mellin, Hugh P. A. Sweatman, Lauren E. Nadler, Jon Brodie, Cassandra A. Thompson, Jessica Hoey, Arthur R. Bos, Maria Byrne, Vanessa Messmer, Sofia A. V. Fortunato, Carla C. M. Chen, Alexandra C. E. Buck, Russell C. Babcock, Sven Uthicke

Marine & Environmental Sciences Faculty Articles

Research on the coral-eating crown-of-thorns starfish (CoTS) has waxed and waned over the last few decades, mostly in response to population outbreaks at specific locations. This review considers advances in our understanding of the biology and ecology of CoTS based on the resurgence of research interest, which culminated in this current special issue on the Biology, Ecology and Management of Crown-of-Thorns Starfish. More specifically, this review considers progress in addressing 41 specific research questions posed in a seminal review by P. Moran 30 years ago, as well as exploring new directions for CoTS research. Despite the plethora of research on …

Reconciling The Challenge Of Aphanic Species Within Marine Conservation, Kerri L. Bolow

HCNSO Student Capstones

Aphanic species are those within a taxonomic complex that may not be readily distinguishable from other sympatric species. The existence of these species is becoming apparent at an increasing rate through the use of technological tools like molecular genetic analyses. A lack of clarity on the definitions of terms used to describe similar species, how these species are identified, and how prevalent they are can confound identification, description, and management of these organisms. This review collects and defines the terms used to describe these hidden species and suggests the use of the term aphanic for situations where additional information (and …

Life History Of The Non-Native Invasive Red Lionfish (Pterois Volitans) In The Northern Gulf Of Mexico, Alexander Q. Fogg

Master's Theses

Invasive Red Lionfish (Pterois volitans) were first detected in the northern Gulf of Mexico (nGOM) in 2010 and since then their numbers have increased dramatically. From 2010 to 2015, more than 15,000 Red Lionfish were collected opportunistically from the nGOM for this study. Length and weight relationships differed significantly among ecoregions by sex and there was clear sexual dimorphism in size with males being larger and heavier. Red Lionfish age ranged from 0-4.5 years old and males achieved greater growth rate (K) and asymptotic maximum lengths (L_inf) compared to females and these parameters were also different …

Frontiers In Otolith Chemistry: Insights, Advances And Applications, B. D. Walther, K. E. Limburg, C. M. Jones, J. J. Schaffler

OES Faculty Publications

The rapid proliferation of publications employing chemical assays of fish hard parts, and otoliths in particular, has led to many novel insights into the migration patterns, life history strategies and mixed stock dynamics of fishes across the globe (Campana et al., 2000; Elsdon et al., 2008; Walther & Limburg, 2012). These insights include uncovering diverse migratory strategies within species and populations (Kerr et al., 2009; Hogan et al., 2014; Schoen et al., 2016), quantifying rates of mixing among stocks across management boundaries (Rooker et al., 2008; Walther & Thorrold, 2010) and estimating the relative …

Surveying Coral Reef Fishes : A Manual For Data Collection, Processing, And Interpretation Of Fish Survey Information For The Tropical Northwest Atlantic, Emily Schmitt Lavin, Deena Feeley, Kathleen Sullivan-Sealey

Emily F Schmitt Lavin

In order to utilize the untapped resources of volunteers, REEF and TNC, in active partnership, established the REEF Fish Survey Project. The Project involves the training and mobilization of a large corps of volunteers and is currently the only program with the technical and organizational ability to gather marine biodiversity data in a systematic and reliable manner. Objectives of the project are: 1.) to provide training and education opportunities for SCUBA divers and snorkelers to learn to identify and appreciate marine life 2.) to make data and summary reports readily accessible to the marine science, resource management, and conservation communities …

Management Recommendations For Restoration Of The Degraded Olympia Oyster, Ostrea Lurida Carpenter 1864 In Tomales Bay, Ca, Carolyn M. Gibson

Master's Projects and Capstones

This research addresses the effective restoration of Olympia oyster populations in Tomales Bay, Marin County, California. Chapter 2 provides background information on the Tomales Bay estuary, regional history, and ecology of the Olympia oyster. Following this background discussion, each of the three aforementioned degraders of Olympia oyster populations in Tomales Bay is presented: ocean acidification (Chapter 3), sedimentation (Chapter 4), and invasive species (Chapter 5). Each of these issues creates numerous barriers that require the attention of resource protection managers. Chapter 6 presents overall Research Conclusions and Chapter 7 identifies management recommendations to effectively begin the restoration of the Olympia …

Seasonal Warm-Water Refuge And Sanctuary Usage By The Florida Manatee (Trichechus Manatus Latirostris) In Kings Bay, Citrus County, Florida, Danielle C. Sattelberger

HCNSO Student Theses and Dissertations

The largest Florida manatee (Trichechus manatus latirostris) aggregation at a natural warm-water refuge occurs in Kings Bay, Crystal River, FL. Over the last 32 years, the U.S. Fish and Wildlife Service and the State of Florida have created a network of manatee protection areas within Kings Bay including a year-round refuge designation and seven Federal manatee sanctuaries during the winter manatee season (November 15 – March 31). Aerial survey data collected between 1983 and 2012 was used to examine the seasonal change in manatee distribution within Kings Bay in order to assess the effectiveness of current sanctuary sizes …

Water Column Productivity And Temperature Predict Coral Reef Regeneration Across The Indo-Pacific, Bernhard Riegl, Peter W. Glynn, Evie A. Wieters, Samuel J. Purkis, C. D'Angelo, Joerg Wiedenmann

Marine & Environmental Sciences Faculty Articles

Predicted increases in seawater temperatures accelerate coral reef decline due to mortality by heat-driven coral bleaching. Alteration of the natural nutrient environment of reef corals reduces tolerance of corals to heat and light stress and thus will exacerbate impacts of global warming on reefs. Still, many reefs demonstrate remarkable regeneration from past stress events. This paper investigates the effects of sea surface temperature (SST) and water column productivity on recovery of coral reefs. In 71 Indo-Pacific sites, coral cover changes over the past 1-3 decades correlated negative-exponentially with mean SST, chlorophyll a, and SST rise. At six monitoring sites …

Marine Noise Pollution - Increasing Recognition But Need For More Practical Action, Mark P. Simmonds, Sarah J. Dolman, Michael Jasny, E. C. M. Parsons, Lindy Weilgart, Andrew J. Wright, Russell Leaper

Mark P. Simmonds, OBE

Over the last two decades, marine noise pollution has become increasingly recognized as an issue of major significance. The issue has become a primary focus of marine mammal research, but is also of concern to the public and policy makers. The result has been efforts involving a variety of disciplines, and relevant legislation and associated guidance are now in place in many parts of the world. Most current mitigation efforts are directed at reducing the risk of injury from exposure to intense noise, although the effectiveness of such mitigation measures in terms of risk reduction has rarely been quantified. Longer-term …

Global Population Structure Of The Dusky Shark And Geographic Sourcing Of Shark Fins From Commercial Markets, Teagen K. Gray

HCNSO Student Theses and Dissertations

The dusky shark, Carcharinus obscurus, is a globally distributed, coastal-pelagic species subject to an apparent high level of exploitation. The International Union for the Conservation of Nature (IUCN) lists this species as “Vulnerable” globally, and “Endangered” within western North Atlantic and Gulf of Mexico waters due to an over 80% decline in this region, with no evidence of population recovery. The extensive exploitation of dusky sharks may partly be attributed to the high market value of its fins, but the contribution of individual dusky shark stocks to the fin markets is unknown. This knowledge would be helpful to detect …

Molecular Ecology Of Globally Distributed Sharks, Christine B. Testerman

HCNSO Student Theses and Dissertations

Many sharks have life history characteristics (e.g., slow growth, late age at maturity, low fecundity, and long gestation periods) that make their populations vulnerable to collapse due to overfishing. The porbeagle (Lamna nasus), bull shark (Carcharhinus leucas), great hammerhead (Sphyrna mokarran), and smooth hammerhead (S. zygaena), are all commercially exploited. The population genetic structure of these species was assessed based on globally distributed sample sets using mitochondrial control region (mtCR) sequences and/or nuclear markers. Complex patterns of evolutionary and demographic history were inferred using coalescent and statistical moment-based methods. All four species showed …

Coral Population Trajectories, Increased Disturbance And Management Intervention: A Sensitivity Analysis, Bernhard Riegl, M. L. Berumen, Andrew Bruckner

Marine & Environmental Sciences Faculty Articles

Coral reefs distant from human population were sampled in the Red Sea and one-third showed degradation by predator outbreaks (crown-of-thorns-starfish = COTS observed in all regions in all years) or bleaching (1998, 2010). Models were built to assess future trajectories. They assumed variable coral types (slow/fast growing), disturbance frequencies (5,10,20 years), mortality (equal or not), and connectivity (un/connected to un/disturbed community). Known disturbances were used to parameterize models. Present and future disturbances were estimated from remote-sensing chlorophyll and temperature data. Simulations and sensitivity analysis suggest community resilience at >20-year disturbance frequency, but degradation at higher frequency. Trajectories move from fast-grower …