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Articles 1 - 25 of 25
Full-Text Articles in Marine Biology
An Ecological Assessment Of The Deep-Pelagic Fish Genus Cyclothone (Gonostomatidae; Stomiiformes), Possibly The World’S Most Abundant Fishes, In The Gulf Of Mexico, Olivia C. North-Menthonnex
An Ecological Assessment Of The Deep-Pelagic Fish Genus Cyclothone (Gonostomatidae; Stomiiformes), Possibly The World’S Most Abundant Fishes, In The Gulf Of Mexico, Olivia C. North-Menthonnex
All HCAS Student Capstones, Theses, and Dissertations
The fish genus Cyclothone is considered the most abundant vertebrate taxon on Earth. Despite this assertion, very few detailed ecological studies of this genus exist for any site in the World Ocean, largely due to the lack of expertise (and willingness) to identify specimens from existing sample sets. This study will provide a species-level description of the abundance, vertical distribution, and size structuring of the genus Cyclothone in the Gulf of Mexico, a hyper-diverse, deep-pelagic ecosystem that is increasingly impacted by anthropogenic disturbances. As the putative most-abundant fishes in the ecosystem, this characterization is critically needed for a holistic understanding …
Drone Images Afford More Detections Of Marine Wildlife Than Real-Time Observers During Simultaneous Large-Scale Surveys, Amanda J. Hodgson, Nat Kelly, David Peel
Drone Images Afford More Detections Of Marine Wildlife Than Real-Time Observers During Simultaneous Large-Scale Surveys, Amanda J. Hodgson, Nat Kelly, David Peel
Research outputs 2022 to 2026
There are many advantages to transitioning from conducting marine wildlife surveys via human observers onboard light-aircraft, to capturing aerial imagery using drones. However, it is important to maintain the validity of long-term data series whilst transitioning from observer to imagery surveys. We need to understand how the detection rates of target species in images compare to those collected from observers in piloted aircraft, and the factors influencing detection rates from each platform. We conducted trial ScanEagle drone surveys of dugongs in Shark Bay, Western Australia, covering the full extent of the drone’s range (∼100 km), concurrently with observer surveys, with …
Drones For Large-Scale Wildlife Surveys: Raw Data To Support Manuscript - Hodgson Et Al, Amanda Hodgson
Drones For Large-Scale Wildlife Surveys: Raw Data To Support Manuscript - Hodgson Et Al, Amanda Hodgson
Research Datasets
We conducted trial ScanEagle drone surveys of dugongs in Shark Bay, Western Australia, covering the full extent of the drone’s range (~ 100 km), concurrently with observer surveys, with drone flying above or just behind the piloted aircraft. We aimed to test the assumption that drone imagery could provide comparable detection rates of dugongs to human observers when influenced by same environmental conditions. Data in "All data for analysis - Shark Bay Hodgson et al" include a summary of the sightings from both platforms per transect segment, including associated environmental covariates. Also included are details of each dugong group sighted …
A Nematode Community-Based Integrated Productivity Efficiency (Ipe) Model That Identifies Sustainable Soil Health Outcomes: A Case Of Compost Application In Carrot Production, A. Habteweld, A. Kravchencko, Parwinder Grewal, H. Melakeberhan
A Nematode Community-Based Integrated Productivity Efficiency (Ipe) Model That Identifies Sustainable Soil Health Outcomes: A Case Of Compost Application In Carrot Production, A. Habteweld, A. Kravchencko, Parwinder Grewal, H. Melakeberhan
School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations
Percent soil organic matter (SOM), pH and crop yield are among the biophysicochemical process-driven soil health indicators (SHIs). However, identifying sustainable soil health conditions using these SHIs is limited due to the lack of Integrated Productivity Efficiency (IPE) models. We define IPE as a concept that identifies best-to-worst-case soil health outcomes by assessing the effect of agronomic practices on weighted abundance of functional guilds (WAFG) of beneficial soil organisms and SHIs simultaneously. Expressing WAFG of all beneficial nematodes (x-axis) and SHIs (y-axis) as a percent of untreated control and regression of x and y reveals four quadrants describing worst-to-best-case outcomes …
Spatiotemporal Patterns In The Biomass Of Drift Macroalgae In The Indian River Lagoon, Florida, United States, Lauren M. Hall, Lori J. Morris, Robert H. Chamberlain, M. Dennis Hanisak, Robert W. Virnstein, Richard Paperno, Bernhard Riegl, L. Rex Ellis, Ali Simpson, Charles A. Jacoby
Spatiotemporal Patterns In The Biomass Of Drift Macroalgae In The Indian River Lagoon, Florida, United States, Lauren M. Hall, Lori J. Morris, Robert H. Chamberlain, M. Dennis Hanisak, Robert W. Virnstein, Richard Paperno, Bernhard Riegl, L. Rex Ellis, Ali Simpson, Charles A. Jacoby
Marine & Environmental Sciences Faculty Articles
Drift macroalgae plays key roles in the ecology of many coastal systems, including the Indian River Lagoon. In the lagoon, changes in the biomass of drift macroalgae may have interacted with an unprecedented bloom of phytoplankton in 2011. Patterns in the biomass of drift macroalgae were identified using new and original analyses of data from several sampling programs collected between 1997 and 2019. All available data show a relatively low biomass of drift macroalgae in 2010–2012, and surveys of fixed transects and seining as part of a fisheries independent monitoring program also recorded low biomass in 2016. Low light availability …
Population Parameter Estimation And Stable Isotope Analysis Of Gulf Sturgeon (Acipenser Oxyrinchus Desotoi) In The Pascagoula River, Alfonso Cohuo
Population Parameter Estimation And Stable Isotope Analysis Of Gulf Sturgeon (Acipenser Oxyrinchus Desotoi) In The Pascagoula River, Alfonso Cohuo
Master's Theses
Gulf Sturgeon (GS), Acipenser oxyrinchus desotoi, are a threatened, anadromous fish species in the northern Gulf of Mexico. Their range is from the Pearl River, LA, in the west to the Suwannee River, FL, in the east with a longitudinal divide at Mobile Bay, AL, creating a western population unit (WPU) and an eastern population unit (EPU). Sturgeon belonging to the WPU exhibit lower abundances, higher mortality rates, and are overall less studied than their EPU counterparts. Notable data gaps for the WPU includes the absence of recent population parameter estimations and confirmed feeding habitat. My thesis aims to …
Shadowed Image Particle Profiling Evaluation Recorder (Sipper) Plankton And Marine Snow Abundance And Distribution Data Collected Aboard Multiple Research Cruises In The Northeastern Gulf Of Mexico From 2010-05-12 To 2010-09-16, Kendra L. Daly, Andrew W. Remsen, Kurt Kramer
Shadowed Image Particle Profiling Evaluation Recorder (Sipper) Plankton And Marine Snow Abundance And Distribution Data Collected Aboard Multiple Research Cruises In The Northeastern Gulf Of Mexico From 2010-05-12 To 2010-09-16, Kendra L. Daly, Andrew W. Remsen, Kurt Kramer
C-IMAGE data
This dataset contains the abundance and distribution of marine snow, phytoplankton, zooplankton, and larval fish, along with environmental parameters, collected aboard several research vessels (RV Weatherbird II, MV Specialty Diver, RV Gordon Gunter) in the northeastern Gulf of Mexico from 2010-05-12 to 2010-09-16. A high speed Dalsa Piranha-2 line-scan camera and a pseudo-collimated LED generated light sheet was used to image the shadows and outlines of resolvable particles that passed through a 100 cm2 field of view. The operational optical resolution of the system was ~65 um. The camera was towed at speeds between 2-3 knots in an oblique profile …
First Estimates Of Greenland Shark (Somniosus Microcephalus) Abundances In Arctic Waters, Taryn Szalay
First Estimates Of Greenland Shark (Somniosus Microcephalus) Abundances In Arctic Waters, Taryn Szalay
Scientific Communication News
No abstract provided.
Abundance And Occurrence Of Common Bottlenose Dolphins (Tursiops Truncatus) In Three Estuaries Of The Northwestern Gulf Of Mexico, Errol Ronje, Heidi Whitehead, Kevin Barry, Sarah Piwetz, Juliane Struve, Vincent Lecours, Lance Garrison, Randall S. Wells, Keith D. Mullin
Abundance And Occurrence Of Common Bottlenose Dolphins (Tursiops Truncatus) In Three Estuaries Of The Northwestern Gulf Of Mexico, Errol Ronje, Heidi Whitehead, Kevin Barry, Sarah Piwetz, Juliane Struve, Vincent Lecours, Lance Garrison, Randall S. Wells, Keith D. Mullin
Gulf and Caribbean Research
Current abundance estimates for populations of common bottlenose dolphins (Tursiops truncatus, Montagu, 1821) in bays, sounds, and estuaries are lacking throughout most of the northwestern Gulf of Mexico, including areas of Texas and western Louisiana. To address this issue, we conducted 92 small-boat photographic identification surveys covering ~2000 km2 and comprising ~11,000 km of track-line in winter and summer seasons in West Bay, TX (2014 – 2015, n = 25), the Galveston Bay, TX system (2016, n = 50), Sabine Lake, TX (2017, n = 17), and adjacent coastal waters. Individual dolphin encounter histories were constrained by …
Determining How Risk Effects Predator-Prey Interactions Of Marine Communities In The Nearshore Environment Of South Bimini, The Bahamas, Kendall Brancart
Determining How Risk Effects Predator-Prey Interactions Of Marine Communities In The Nearshore Environment Of South Bimini, The Bahamas, Kendall Brancart
HCNSO Student Theses and Dissertations
Predators often have strong top-down effects on ecosystems and are considered a priority for conservation and management. Predator activity can influence prey distribution, abundance, and foraging behaviors and are likely to influence habitat by impacting ecological and environmental characteristics as well as presence of competitor species. There are knowledge gaps of the functional diversity of fish assemblages, non-consumptive predator effects, and environmental effects on fish assemblages. With this study, effects of top marine predators, such as sharks and great barracuda, on diversity and abundance of prey communities were examined in putative low (north side of South Bimini = lagoon) and …
Sponges Structure Water-Column Characteristics In Shallow Tropical Coastal Ecosystems, Marla M. Valentine, Mark J. Butler Iv
Sponges Structure Water-Column Characteristics In Shallow Tropical Coastal Ecosystems, Marla M. Valentine, Mark J. Butler Iv
Biological Sciences Faculty Publications
Sponges can have powerful effects on ecosystem processes in shallow tropical marine ecosystems. They drive benthic-pelagic coupling by filtering dissolved and particulate organic matter from the water column, alter water chemistry in association with their symbiotic microorganisms, and increase habitat structural complexity. Anthropogenic degradation of coastal waters is widespread and can reduce the density and diversity of foundation species such as sponges, potentially diminishing their contributions to ecosystem processes. We used a novel mesocosm design that minimized artifacts associated with traditional single-species and closed-system filtration experiments to examine the effects of water turnover and sponge biomass on water-column properties. Using …
Adult Atlantic Sturgeon Population Dynamics In The York River, Virginia, Jason E. Kahn
Adult Atlantic Sturgeon Population Dynamics In The York River, Virginia, Jason E. Kahn
Graduate Theses, Dissertations, and Problem Reports
Sturgeon first appear in the fossil record in the Triassic Period just over 200 million years ago and are among the most primitive of the bony fishes. Despite their large size and historic presence along the East Coast, Atlantic sturgeon were not targeted for their meat and caviar as a commercial fishery until 1880. By 1905 they had declined to less than one percent of their pre-fishing abundance but the fishery continued. Prior to 1980, there had been very little research on Atlantic sturgeon, primarily limited to documenting landing location and poundage, maximum longevity, or weight of eggs per fish. …
Red Snapper Distribution On Natural Habitats And Artificial Structures In The Northern Gulf Of Mexico, Mandy Karnauskas, John F. Walter Iii, Matthew D. Campbell, Adam G. Pollack, J. Marcus Drymon, Sean P. Powers
Red Snapper Distribution On Natural Habitats And Artificial Structures In The Northern Gulf Of Mexico, Mandy Karnauskas, John F. Walter Iii, Matthew D. Campbell, Adam G. Pollack, J. Marcus Drymon, Sean P. Powers
University Faculty and Staff Publications
In 2011, an intensive, multiple-gear, fishery-independent survey was carried out in the northern Gulf of Mexico (GOM) to collect comprehensive age and length information on Red Snapper Lutjanus campechanus. Based on this synoptic survey, we produced a spatial map of Red Snapper relative abundance that integrates both gear selectivity effects and ontogenetically varying habitat usage. Our methodology generated a spatial map of Red Snapper at a 10-km2 grid resolution that is consistent with existing knowledge of the species: Red Snapper occurred in relatively high abundances at depths of 50–90 m along the coasts of Texas and Louisiana and in smaller, …
Investigating The Spatial Distribution And Effects Of Nearshore Topography On Acropora Cervicornis Abundance In Southeast Florida, Nicole D'Antonio, David S. Gilliam, Brian K. Walker
Investigating The Spatial Distribution And Effects Of Nearshore Topography On Acropora Cervicornis Abundance In Southeast Florida, Nicole D'Antonio, David S. Gilliam, Brian K. Walker
Marine & Environmental Sciences Faculty Articles
Dense Acropora cervicornis aggregations, or patches, have been documented within nearshore habitats in Southeast Florida (SE FL) despite close proximity to numerous anthropogenic stressors and subjection to frequent natural disturbance events. Limited information has been published concerning the distribution and abundance of A. cervicornis outside of these known dense patches. The first goal of this study was to conduct a spatially extensive and inclusive survey (9.78 km2) to determine whether A. cervicornis distribution in the nearshore habitat of SE FL was spatially uniform or clustered. The second goal was to investigate potential relationships between broad-scale seafloor topography and …
Sipper Plankton And Marine Snow Abundance And Distribution Data For The Northeastern Gulf Of Mexico: June 2012 – August 2014, Kendra L. Daly
Sipper Plankton And Marine Snow Abundance And Distribution Data For The Northeastern Gulf Of Mexico: June 2012 – August 2014, Kendra L. Daly
C-IMAGE data
This dataset contains seasonal and interannual marine snow, phytoplankton, zooplankton, and larval fish abundance and distributions collected from the northeastern Gulf of Mexico using the Shadowed Image Particle Profiling Evaluation Recorder (SIPPER). The purpose of the dataset is to assess the seasonal and interannual zooplankton abundance and distribution after the Deepwater Horizon oil spill.
Connectivity Of Coastal And Oceanic Ecosystems: Pelagic Habitat Use By Juvenile Reef Fishes In The Gulf Of Mexico, Katie Bowen
Connectivity Of Coastal And Oceanic Ecosystems: Pelagic Habitat Use By Juvenile Reef Fishes In The Gulf Of Mexico, Katie Bowen
HCNSO Student Theses and Dissertations
The assemblage structure, abundance, biomass, and vertical distribution of juvenile reef fishes in the offshore pelagic habitat of the northern Gulf of Mexico are described as part of the NOAA-supported Offshore Nekton Sampling and Analysis Program. The results presented here are from a 3-month, continuous sampling series in 2011 in which discrete depth strata from 0 to 1500 m were sampled using a 10-m2 MOCNESS midwater trawl. This is the first study to examine pelagic juvenile reef fish distributions across the entire oceanic northern Gulf of Mexico seaward of the continental shelf break after the Deepwater Horizon Oil Spill. …
Photo-Identification Methods Reveal Seasonal And Long-Term Site-Fidelity Of Risso’S Dolphins (Grampus Griseus) In Shallow Waters (Cardigan Bay, Wales), Marijke N. De Boer, Josephine Clark, Mardik F. Leopold, Mark P. Simmonds, Peter J.H. Reijnders
Photo-Identification Methods Reveal Seasonal And Long-Term Site-Fidelity Of Risso’S Dolphins (Grampus Griseus) In Shallow Waters (Cardigan Bay, Wales), Marijke N. De Boer, Josephine Clark, Mardik F. Leopold, Mark P. Simmonds, Peter J.H. Reijnders
Mark P. Simmonds, OBE
A photo-identification study on Risso’s dolphins was carried out off Bardsey Island in Wales (July to September, 1997-2007). Their local abundance was estimated using two different analytical techniques: 1) mark-recapture of well-marked dolphins using a “closed-population” model; and 2) a census technique based on the total number of iden-tified individual dolphins sighted over the study period. The mark-recapture estimates of 121 (left sides; 64 - 178, 95% CI; CV 0.24) and 145 dolphins (right sides; 78 - 213, 95% CI; CV 0.24) closely matched the census technique estimates (population size of 90 - 151). It was found that the dolphins …
Interactions Between Short-Beaked Common Dolphin (Delphinus Delphis) And The Winter Pelagic Pair-Trawl Fishery Ff Southwest England (Uk), Marijke N. De Boer, James T. Saulino, Mardik F. Leopold, Peter J.H. Reijnders, Mark P. Simmonds
Interactions Between Short-Beaked Common Dolphin (Delphinus Delphis) And The Winter Pelagic Pair-Trawl Fishery Ff Southwest England (Uk), Marijke N. De Boer, James T. Saulino, Mardik F. Leopold, Peter J.H. Reijnders, Mark P. Simmonds
Mark P. Simmonds, OBE
During offshore and onshore studies (2004 to 2009), the interactions between pair-trawls and short-beaked common dolphins (Delphinus delphis) were studied to better understand the impact of bycatch. A ‘hotspot’ area where pair-trawls overlapped with high dolphin abundance was identified. We made comparisons between boat-based data collected in absence and presence of pair-trawlers. The relative abundance and group-size of dolphins was significantly higher in the presence of pair-trawlers. Dolphins were observed associating with towing and hauling procedures. Significantly, more carcasses occurred in areas with hauling-activity than those without. Body-temperatures obtained from carcasses found near operating pair-trawlers indicated that bycatch mostly occurred …
Distribution And Abundance Of The Kittlitz's Murrelet Brachyramphus Brevirostris In Selected Areas Of Southeastern Alaska, Michelle L. Kissling, Paul M. Lukacs, Stephen B. Lewis, Scott M. Gende, Katherine J. Kuletz, Nicholas R. Hatch, Sarah K. Schoen, Susan Oehlers
Distribution And Abundance Of The Kittlitz's Murrelet Brachyramphus Brevirostris In Selected Areas Of Southeastern Alaska, Michelle L. Kissling, Paul M. Lukacs, Stephen B. Lewis, Scott M. Gende, Katherine J. Kuletz, Nicholas R. Hatch, Sarah K. Schoen, Susan Oehlers
Wildlife Biology Faculty Publications
We conducted boat-based surveys for the Kittlitz’s Murrelet Brachyramphus brevirostris during the breeding season in southeastern Alaska from 2002 to 2009. We completed a single survey in seven areas and multiple annual surveys in three areas. Although surveys spanned a broad geographic area, from LeConte Bay in the south to the Lost Coast in the north (~655 km linear distance), roughly 79% of the regional population of Kittlitz’s Murrelet was found in and between Icy and Yakutat bays (~95 km linear distance). The congeneric Marbled Murrelet B. marmoratus outnumbered the Kittlitz’s Murrelet in all areas surveyed except Icy Bay; in …
Comparison Of Plankton Catch By Three Light-Trap Designs In The Northern Gulf Of Mexico, Richard F. Shaw, Joseph S. Cope, G. Joan Holt, Et Al
Comparison Of Plankton Catch By Three Light-Trap Designs In The Northern Gulf Of Mexico, Richard F. Shaw, Joseph S. Cope, G. Joan Holt, Et Al
VIMS Articles
The ichthyoplankton catch and zooplankton biomass estimates of three light-trap designs-cylindrical, quatrefoil, and rectangular-were compared over three consecutive nights at an offshore petroleum platform in the northern Gulf of Mexico. The quatrefoil light trap had higher fish and zooplankton abundance estimates than the other two designs. Categorical analysis of the two abundant fish taxa, Opisthonema oglinum and Anchoa spp., indicated that catch by the quatrefoil and rectangular traps was similar, capturing more larvae than juveniles and more O. oglinum than Anchoa spp. relative to cylindrical trap catch. Across all fish species, the quatrefoil captured a greater percentage of larvae. Other …
Physical Factors Of Differentiation In Macrobenthic Communities Between Atoll Lagoons In The Central Tuamotu Archipelago (French Polynesia), Mehdi Adjeroud, Serge Andrefouet, Claude Payri, Joel Orempuller
Physical Factors Of Differentiation In Macrobenthic Communities Between Atoll Lagoons In The Central Tuamotu Archipelago (French Polynesia), Mehdi Adjeroud, Serge Andrefouet, Claude Payri, Joel Orempuller
Marine Science Faculty Publications
Nine atolls were characterized in order to understand how physical factors control the species composition, diversity, and abundance of macrobenthic (coral, mollusc, echinoderm, and algal) communities inside the lagoons. Only one region, the central part of Tuamotu Archipelago, French Polynesia, was considered, in order to minimise the variation due to regional factors between regions. The lagoons investigated showed a gradient of physical factors, providing various landscape configurations. The physical factors were surface area, abundance of pinnacles, degree of hydrodynamic aperture, and relative importance of passes in this degree of aperture. Macrobenthic communities were characterized by low diversity and strong dominance …
Estuarine Relationships Between Zooplankton Community Structure And Trophic Gradients, Gyung Soo Park, Harold G. Marshall
Estuarine Relationships Between Zooplankton Community Structure And Trophic Gradients, Gyung Soo Park, Harold G. Marshall
Biological Sciences Faculty Publications
Zooplankton and water quality parameters were investigated at eight mesohaline stations in the lower Chesapeake Bay and Elizabeth River from January through December 1994 to identify the changes of zooplankton community structure with increased eutrophication. The total micro- and mesozooplankton biomass decreased with the increase of eutrophication. However, the relative proportion of microzooplankton increased with increased eutrophication. Within highly eutrophied waters, the small oligotrichs (m) and rotifers dominated the total zooplankton biomass (as carbon). However, tintinnids, copepod nauplii and mesozooplankton significantly decreased with the increase of eutrophication. These patterns were consistent throughout the seasons and had significant relationships statistically. These …
Mesozooplankton Distribution And Abundance In The Pagan River: A Nutrient Enriched Subestuary Of The James River, Virginia, Lillian N. Davis, Harold G. Marshall
Mesozooplankton Distribution And Abundance In The Pagan River: A Nutrient Enriched Subestuary Of The James River, Virginia, Lillian N. Davis, Harold G. Marshall
Biological Sciences Faculty Publications
The mesozooplankton in the Pagan River was dominated by calanoid copepods, with abundance peaks occurring during late winter-early spring and from late summer into early fall. This included spring, summer, and fall abundance maxima. The total mean abundance of the mesozooplankton was 3,008/m3.
Seasonal Phytoplankton Development Within Three Rivers In The Lower Chesapeake Bay Region, Harold G. Marshall, Lewis F. Affronti
Seasonal Phytoplankton Development Within Three Rivers In The Lower Chesapeake Bay Region, Harold G. Marshall, Lewis F. Affronti
Biological Sciences Faculty Publications
The seasonal and inter-annual concentrations of phytoplankton were studied over a 50 month period in the lower James, York and Rappahannock Rivers (USA). Differences in the onset, duration and magnitude of major seasonal growth periods varied from year to year. There was a tendency for spring, summer and fall maxima, with a winter period of reduced abundance. An additional study of picoplankton over a 12 month period indicated greatest abundance during summer and fall, with least development in winter.
Observations Of The Phytoplankton Standing Crop At The Shelf Margin Of The Mid Atlantic Bight, Bruce B. Wagoner, Harold G. Marshall
Observations Of The Phytoplankton Standing Crop At The Shelf Margin Of The Mid Atlantic Bight, Bruce B. Wagoner, Harold G. Marshall
Biological Sciences Faculty Publications
A comparison of the total percentage cell abundance and cell biovolume relationships of major phytoplankton categories was made between two station sets across the shelf margin. Diatom values for abundance and biovolume were greater at oceanic stations compared to the outer shelf stations, with dinoflagellates having the reverse pattern. The composite contributions to biovolume and abundance in the standing crop from other phytoplankton categories were greater over the outer shelf than beyond the shelf margin. The major source of biovolume (biomass) from the outer shelf and these oceanic stations came from the diatoms and dinoflagellates, with an average mean of …