Marine Biology Commons^™

Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott

Research outputs 2022 to 2026

Anthropogenic activities are causing detrimental changes to coastal plants– namely seagrass, mangrove, and tidal marshes. Looking beyond recent times to past vegetation dynamics is critical to assess the response and resilience of an environment to change. Here, we develop a high-resolution multi-proxy approach, providing a new evidence base to decipher long-term change in coastal plant communities. Combining targeted environmental DNA analysis with chemical analysis of soils, we reconstructed 4,000 years of change at a temperate wetland on Torrens Island South Australia and identified an ecosystem shift that occurred ~ 1000 years ago. What was once a subtidal seagrass system shifted …

Prochlorococcus Death By A Ubiquitous Zooplankton Filter Feeder, Avery E. Harman

University Honors Theses

Prochlorococcus is a globally abundant cyanobacterium that can help reveal the ecology of microorganisms in the ocean. Specifically, mortality by zooplankton such as appendicularians is globally important and Prochlorococcus can help reveal some of the choices made around feeding for this ubiquitous filter feeder. Two ecotypes of Prochlorococcus were introduced to appendicularians to determine if appendicularian feed selectively between these ecotypes. Further, a single ecotype of Prochlorococcus was fed to appendicularians over a variety of life stages to determine if retention rate changed with appendicularian life stage. My results reveal that there is no significant selection between the two Prochlorococcus …

Boom, Shake The Room: Seismic Surveys Affect Behaviour And Survival Of Western Rock Lobster, Simon De Lestang, Jason How, Kelvin Rushworth, Christine Erbe

Fisheries Research Articles

Seismic studies are conducted to investigate subterranean structures for, among other things, indications of petroleum and mineral deposits. Within the marine environment, these studies use sub-surface airguns to create powerful sound waves that penetrate the substrate, with their variable reflection time and strength being used to model seabed densities, structure, and composition. There is a growing body of work examining the effects of seismic surveys on marine fauna, primarily marine mammals and to a lesser extent fishes and invertebrates. Recently published studies on the southern rock lobster have shown these intense sound waves can affect lobster physiology and short-term behaviour. …

Concepts In Animal Parasitology, Scott L. Gardner, Sue Ann Gardner

Zea E-Books Collection

This is a textbook covering concepts in animal parasitology. It is meant to be used by students, teachers, professors, researchers, and members of the public who are interested in learning about animal parasite biology, systematics, taxonomy, zoogeography, and ecology. The primary intended audience is upper-level undergraduate or graduate university students who have knowledge of basic biology and, particularly, basic animal biology. (863 pages, illustrated)

One of the most fascinating things that a person can experience in the complex realm of biology is the discovery of an animal living inside another animal. If this discovery takes place at an early enough …

Using Bayesian Multispecies Models To Evaluate Fish And Invertebrate Detection Probability And Distribution In The Hypersaline Bahia Grande Tidal Basin, Roy M. Ulibarri, Catherine M. Eckert, David Hicks, David Montagne, Brandon Jones, David R. Stewart

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Objective

In 2000, the Laguna Atascosa National Wildlife Refuge acquired the Bahia Grande (Texas) management unit, a space that had lain barren and arid for 70 years. A large cooperative partnership launched a restoration project to replenish the basin and recover its original tidal hydrology. In 2005, the construction of a pilot channel successfully restored water throughout the basin, and plans to eventually widen the channel were developed. Our study aims to evaluate an estuarine habitat restoration by assessing ecological drivers and the impacts on species diversity.

Methods

We evaluated species richness, detection/occupancy rates, and species–habitat relationships, and we estimated …

Fisheries Occasional Publication No.147 - Aquaculture Development Zones – Policy Position Relating To Permitted Alternative Species, Department Of Primary Industries And Regional Development, Western Australia

Fisheries occasional publications

The purpose of this policy is to set out considerations relevant to the assessment of aquaculture proposals within Aquaculture Development Zones (ADZ) for species distinct from the group of species for which the ADZ was initially established (Alternative Species).

Biotechnology For Sustainable Materials: Innovating Today For A Greener Tomorrow, Shashi Kant Bhatia, Saurabh Bhatia, Maria Eugenia Inda-Webb, Konstantina Kourmentza, Tae Seok Moon, Vijai Singh, Vishal Ahuja, Jingbo Li, Sanjeet Mehariya, Jikai Zhao

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

No abstract provided.

Some Reflections On Developing Trend Of Gravimetry In China, Heping Sun

Bulletin of Chinese Academy of Sciences (Chinese Version)

With the development of modern science and technology, gravimetry is growing vigorously and is increasingly becoming an interdisciplinary subject that is closely related to many others such as geology, fundamental physics, geodynamics, hydrology, oceanography, and astronomy. It is now a key subject in giving service to demands in national strategy and fundamental researches in geoscience such as fiducial surveying and mapping, resource exploration, military security, and hazard monitoring. Therefore, owning the core gravimetric techniques is one of the pivots which reflect national core competitiveness. This study first briefly overviews the history and actuality of the growth of gravimetry subject in …

Impacts Of Hematodinium Infection In A Seasonal Population Model Of The Chesapeake Bay Blue Crab, Gwendolyn R. Sargent, Romuald Lipcius, Leah Shaw, Junping Shi, Jeffrey D. Shields

Biology and Medicine Through Mathematics Conference

No abstract provided.

The State Of Knowledge Of Cca Diversity In The Caribbean Coral Reefs, Danielle Macias, Alain Duran, Fabio Nauer

FIU Undergraduate Research Journal

Crustose coralline algae (CCA) are a diverse and ecologically important species found in most of the world’s oceans. The current lack of taxonomic knowledge and relative abundance compromises our ability to predict species diversity numbers and, thus, their ecological roles and impacts on coral reefs. To gather a better understanding of the state of knowledge of crustose coralline algae taxonomy in the Caribbean, 107 different research papers, and other primary and secondary literature were studied; any source with taxonomical information, species identification, or genetic markers for identification was recorded. All Genebank codes were collected and sorted by supposed species marker …

With Love, ; An Interdisciplinary And Intersectional Look At Why Creativity Is Essential, Theo Starr Gardner

Whittier Scholars Program

My Whittier Scholars Program self-designed major, Teaching Creativity, is a mixture of Art, Literature, and Education classes. My research and praxis classes have been focused on the ‘how?’s and 'why?’s of creativity, so it felt only right that my project should be a constructivist, generative project. The project I have been working on throughout my time at Whittier, and that has just fully come to fruition on April 11th, 2024, was a solo art gallery/open mic event entitled ‘With Love,’. With Love, was conceptually inspired by the research I’ve conducted on creativity and creative arts education over the past few …

The Influence Of A Ubiquitous Filter Feeder On Coastal Microbial Communities., Melissa Steinman, Moritz S. Schmid, Robert K. Cowen, Su Sponaugle, Kelly R. Sutherland, Anne W. Thompson

Student Research Symposium

Doliolids have a unique ability to impact the marine microbial community through bloom events and high filtration rates. Their predation on large eukaryotic microorganisms is established and evidence of predation on smaller prokaryotic microorganisms is beginning to emerge. We studied the retention of both eukaryotic and prokaryotic microbial taxa by wild-caught doliolids in the northern California Current system. We use qPCR to quantify the impact of doliolids on three important and globally abundant taxa: Synechococcus, SAR11 and diatoms. Doliolids were collected during bloom events identified at three different shelf locations with variable upwelling intensities. We discovered that in addition …

Variability Of Grazing By Appendicularians On Prochlorococcus, Carey Sweeney

Student Research Symposium

The marine picocyanobacterium, Prochlorococcus is the most abundant photosynthetic cell on Earth. These cells are critical to global primary productivity and are critical to biogeochemical cycles of the open ocean. While abiotic environmental factors that influence Prochlorococcus are relatively well-understood, biotic controls, especially predation, are not well-studied. Appendicularians are ubiquitous invertebrate grazers that feed on microbes including Prochlorococcus in the open ocean. However, the details of this feeding interaction have not been characterized. In a laboratory study, I showed that prey retention of Prochlorococcus increases as the life stage of the appendicularians advances and increases with increasing concentration of prey. …

Salt: A Tribute To Ghana's Fishers, Vanessa F. Jaiteh

Green Humanities: A Journal of Ecological Thought in Literature, Philosophy & the Arts

This poem is a tribute to my fieldwork on fisher safety, labour abuses and human rights violations in Ghana’s fisheries.

Characteristics And Motivations Of Passengers On Board A Puffin Tour Boat In Maine, Skye Howard

Honors College

The Atlantic puffin (Fratercula arctica) is a visually attractive seabird found in the North Atlantic Ocean. While research in the Eastern North Atlantic indicates that Puffins attract visitors to areas where the species can be viewed, less is known about visitor interest in Atlantic puffins in the Western North Atlantic. This study helps fill a gap in the literature regarding visitor interest in Atlantic puffins in the Western North Atlantic. The purpose of this study is to provide an understanding of the characteristics of passengers on board a puffin tour boat visiting Petit Manan Island, Maine, and the importance of …

The Historical Biogeography Of Spiny Lobsters In The Genus Panulirus And The Influence Of Environmental Conditions On The Adaptive Evolution Of Mitochondrial Protein-Coding Genes In The Achelata, Alyssa Baker

All Theses

Contemporary and historical changes in marine environmental conditions influence biodiversity drastically. In marine invertebrates with highly dispersive planktonic larvae, diversification is facilitated or constrained by tectonic plate movements altering geography, prevailing current patterns, and climate. The decapod crustacean infraorder Achelata, which contains the spiny (fam. Palinuridae) and slipper (fam. Scyllaridae) lobsters, is characterized by a long-lived phyllosoma larvae stage. Panulirus is the most economically significant and speciose genus of spiny lobsters, with 20 recognized extant species and 5 subspecies distributed throughout shallow tropical and subtropical oceans worldwide. Diversification within these lineages has been proposed to be primarily driven by geological …

West Coast Rock Lobster Resource Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries management papers

Harvest strategies for Western Australia’s (WA) aquatic resources are formal documents developed by the Department of Primary Industries and Regional Development (DPIRD, the Department) to support decision-making processes that ensure the outcomes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002a) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). Harvest strategies are a key component of all contemporary fishery management systems and a requirement for certification under the Marine Stewardship Council (MSC). The objectives of ESD are reflected in the objectives of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act …

Parental Thermal Environment Controls The Offspring Phenotype In Brook Charr (Salvelinus Fontinalis): Insights From A Transcriptomic Study, Ghizlane Banousse, Eric Normandeau, Christine Semeniuk, Louis Bernatchez, Celine Audet

Great Lakes Institute for Environmental Research Publications

rook charr is a cold-water species which is highly sensitive to increased water temperatures, such as those associated with climate change. Environmental variation can potentially induce phenotypic changes that are inherited across generations, for instance, via epigenetic mechanisms. Here, we tested whether parental thermal regimes (intergenerational plasticity) and offspring-rearing temperatures (within-generational plasticity) modify the brain transcriptome of Brook charr progeny (fry stage). Parents were exposed to either cold or warm temperatures during final gonad maturation and their progeny were reared at 5 or 8 °C during the first stages of development. Illumina Novaseq6000 was used to sequence the brain transcriptome …

Response Of Fish Assemblages To Increased Connectivity And Habitat Restoration In Bayou St. John, A Degraded Waterway In New Orleans, La, Alia Jones

University of New Orleans Theses and Dissertations

Bayou St. John is a degraded waterway located within the City of New Orleans. The Bayou, which is disconnected from Lake Pontchartrain by floodgates, has undergone restoration efforts to improve connectivity through frequent floodgate openings and marsh habitat restoration outside of the floodgates. To assess possible responses of local fish assemblages to these restoration efforts, I analyzed long-term fish assemblage data from three sites located inside of the floodgates and one site located at the restored marsh outside of the floodgates. Two sites inside of the floodgates experienced significant changes in assemblages between the pre-opening period (2006-2012) and post-opening period …

Investigation On The Effects Of Biofouling On The Boundary Layer, Adam N. Bacon

University of New Orleans Theses and Dissertations

This study is an investigation of the effect of biofouling on the boundary layer of a flat plate and a NACA 4-digit series foil. Three identical hydrofoils made of resin were placed in the Gulf of Mexico at Grand Isle, Louisiana, and observed and analyzed by marine biologists at the University of New Orleans for their species composition. The resulting biofouling that grew was primarily made up of barnacles and bryozoans. The foils were submerged in an open channel flume at zero incidence and subjected to a series of experiments whose arc-length Reynolds numbers ranged from approximately 13000 to 32000. …

Phenotypic Plasticity In Pigmentation: Investigating Coloration Patterns In Anablepsoides Hartii Population Responses To Environmental Variation, Jasdeep Kaur

2024 Spring Honors Capstone Projects

In this study, we investigated the color-changing capabilities of Trinidadian killifish, Anablepsoides hartii, through exposure to varied color conditions over defined periods of time. Our experiment aims to understand adaptive responses when killifish are subjected to different color backgrounds, exploring their mechanisms to change color. By subjecting the species to different environmental color variations, we sought to discern color change patterns, which could indicate adaptive responses related to camouflage, stress, behavior clues, and physiological adjustments. Carefully controlling environmental factors, we monitored and documented the fishes’ color changes, aiming to provide insights into the interplay between fish’s developmental plasticity and its …

Year-Round Co2 Emissions From The Drawdown Area Of A Tropical Reservoir: Strong Seasonal And Spatial Variation, Ícaro Barbosa, José R. Paranaíba, Sebastian Sobek, Sarian Kosten, Rafael M. Almeida, Vitor Duque, Natália Mendonça, Nathan Barros, Raquel Mendonça

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Highlights

• Drawdown areas emitted 80% of reservoir CO2 with just 1/5 area.

• Emissions from reservoir shorelines near forests were greater than from areas near grassland.

• CO2 emissions increase with the distance from the water.

• Estimates of reservoir drawdown CO2 flux vary by ∼ 300 % across the seasons examined here.

• There was no discernible difference in CO2 emissions between day and night-time.

• A significant increase in CO2 fluxes was observed 30 min after a rewetting event.

Abstract

A growing body of literature points to drawdown areas as important sources of atmospheric CO2 within reservoirs. Yet seasonal and temporal patterns of …

Influence Of The Atlantic Inflow On Trace Metal Enrichments In Sediments And Particulate Matter Of The Nw Alboran Sea (Sw Mediterranean), Albert Palanques, Pere Puig, Pere Masqué, Enrique Isla

Research outputs 2022 to 2026

Trace metal contents and fluxes in downward particulate matter and dated sediment cores of the NW Alboran Sea are analysed in this study with the aim of assessing the role of the Atlantic inflow on their transport. Increases in Zn, Cu and Pb were detected in downward particulate matter collected by sediment traps after river flooding events and after the Aznalcollar mining spill. Their arrival coincided within the recently estimated time range for river particles discharged into the Gulf of Cádiz to reach the Alboran Sea, indicating that their transfer is enhanced during events of increased river inputs of contaminated …

Effects Of Ecologically Relevant Concentrations Of Nitrate On Behavior In Betta Splendens, Sarah Janson

Honors College

Nitrate is a ubiquitous pollutant that is becoming more prevalent in both fresh and saltwater environments. Short term effects are often studied, but an organism’s response to stress can change due to whatever the stressor is. In order to research this, a study was run using environmentally relevant nitrate treatments (0 mg/L, 10 mg/L NO3-N, and 100 mg/L NO3-N) to see the effect of nitrate on scototaxis behaviors, a measure of anxiety. This study used Betta splendens because they are easy to rear and have very well documented behaviors. In addition to the scototaxis, the effect of temperature on mortality …

The Conservation Project: An Exploration Of Multimedia In Ocean Conservation, Ilaria Bardini

Honors College

The Conservation Project ties in many elements of multimedia and its possible applications in marine conservation. The purpose of this thesis was to develop new skills in videography, photography, podcast production, and website development through which to deepen my understanding of the multimedia as a tool in science, through the development of a website.

Ecological, Molecular, And Electron Microscopical Investigations Of The Distribution Of Shell-Boring Polychaetes Along The Coast Of Maine, Emma Tomasetti

Honors College

Blister worms are polychaete worms that live in various calcareous materials such as dead shells, red algae, limestone, and cinder blocks, along with cultured shellfish, such as oysters or sea scallops. These worms can be considered a pest due to their nature to burrow into their host’s substrate and create blisters that then fill with mud and detritus. In chapter 1, I worked closely with an oyster farm looking at the reproductive status of one species of blister worm, P. websteri, and the efficacy of cold storage as a method of ridding oysters of P. websteri. For chapter 2, I …

Skimming Genomes For Systematics And Dna Barcodes Of Corals, Andrea M. Quattrini, Luke J. Mccartin, Erin E. Easton, Jeremy Horowitz, Herman H. Wirshing, Hailey Bowers, Kenneth Mitchell, María Del P. González-García, Makiri Sei, Catherine S. Mcfadden

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Numerous genomic methods developed over the past two decades have enabled the discovery and extraction of orthologous loci to help resolve phylogenetic relationships across various taxa and scales. Genome skimming (or low-coverage genome sequencing) is a promising method to not only extract high-copy loci but also 100s to 1000s of phylogenetically informative nuclear loci (e.g., ultraconserved elements [UCEs] and exons) from contemporary and museum samples. The subphylum Anthozoa, including important ecosystem engineers (e.g., stony corals, black corals, anemones, and octocorals) in the marine environment, is in critical need of phylogenetic resolution and thus might benefit from a genome-skimming approach. We …

The Effects Of Length And Increasing Nitrate Concentrations On Behavior Of Betta Splendens, Tess Hureau

Honors College

Nitrates are an important compound in nature. However, through a number of human activities, nitrate concentrations have exponentially increased in nature. Most of the anthropogenic nitrates come from fertilizers, sewage water, and other wastewater. These nitrates contaminate the water which can get into lakes, rivers, ponds, and other natural bodies of water. Betta splendens are a well studied species in the animal behavior community. They have defined and quantifiable displays and characteristics during aggressive and mating ritual behavior. Betta splendens live in freshwater habitats that have most likely come in contact with the increased levels of nitrates. This study observed …

Physical Forcing Of Productivity, Biomass, And Demography Of Ascophyllum Nodosum, Henry Guy

Honors College

The intertidal coastlines of Maine are dominated by a near monoculture of Ascophyllum nodosum. This species of macroalgae is foundational to the ecosystems in which it inhabits, so what controls the Ascophyllum nodosum controls the coasts. A. nodosum has been documented as a steady-state species in terms of biomass, canopy height, and primary productivity. Algal biomass results from algal recruitment, primary productivity (growth rate), and environmental disturbance (rate of biomass loss). My study estimated the abiotic disturbance of the environment on biotic factors ofAscophyllum nodosum. Physical forcings of the environment, ice, water motion, and light, drive Ascophyllum nodosum abundance, distribution, …

Behavioral Effects Of Nitrate On Siamese Fighting Fish (Betta Splendens): Female Mate Preference And Anxiety, Courtney Stow

Honors College

In aquatic ecosystems, nitrate pollution due to anthropogenic activities has led to an increase in nitrate in water runoff and water resources. Nitrate is an essential component in the environment, especially for plant nutrients, but excess amounts can create water quality problems which can lead to serious consequences in humans and aquatic organisms. The effect of nitrate on organismal behavior is not well studied. The objective of this study was to examine how 96-h exposure to nitrate treatments (0, 10, 100ppm) modified female Betta splendens behavior, particularly mate preference for male color (e.g., red vs. blue males) and anxiety-like behavior. …