Terrestrial and Aquatic Ecology Commons^™

Core Commitments For Field Trials Of Gene Drive Organisms, Kanya C. Long, Luke Alphey, George J. Annas, Cinnamon S. Bloss, Karl J. Campbell, Jackson Champer, Chun-Hong Chen, Amit Choudhary, George M. Church, James P. Collins, Kimberly L. Cooper, Jason A. Delborne, Owain R. Edwards, Claudia I. Emerson, Kevin Esvelt, Sam Weiss Evans, Robert M. Friedman, Valentino M. Gantz, Fred Gould, Sarah Hartley, Elizabeth Heitman, Janet Hemingway, Hirotaka Kanuka, Jennifer Kuzma, James V. Lavery, Yoosook Lee, Marce Lorenzen, Jeantine E. Lunshof, John M. Marshall, Philipp W. Messer, Craig Montell, Kenneth A. Oye, Megan J. Palmer, Philippos Aris Papathanos, Prasad N. Paradkar, Antoinette J. Piaggio, Jason L. Rasgon, Gordana Rašić, Larisa Rudenko, J. Royden Saah, Maxwell J. Scott, Jolene T. Sutton, Adam E, Vorsino, Omar S. Akbari

USDA Wildlife Services: Staff Publications

We must ensure that trials are scientifically, politically, and socially robust, publicly accountable, and widely transparent.

Gene drive organisms (GDOs), whose genomes have been genetically engineered to spread a desired allele through a population, have the potential to transform the way societies address a wide range of daunting public health and environmental challenges. The development, testing, and release of GDOs, however, are complex and often controversial. A key challenge is to clarify the appropriate roles of developers and others actively engaged in work with GDOs in decision-making processes, and, in particular, how to establish partnerships with relevant authorities and other …

Light Conditions During Desiccation And Rehydration Impact The Recovery Of Cultured Timmiella Crassinervis, Sotodeh Ebrahimi

UNLV Theses, Dissertations, Professional Papers, and Capstones

Many terrestrial mosses of xeric environments experience excess light during extended periods of desiccation. While dry or hydrated, excess light energy can lead to formation of reactive oxygen species and photoinhibition (e.g. damage to Photosystem II) which affects photosynthetic stress and efficiency. This study aimed to determine the effect of duration dry and light intensity (PAR) on cultured shoots of the chaparral moss Timmiella crassinervis, as well as to elucidate the optimal rehydration light conditions for this species. I hypothesized that 1) mosses exposed to higher light intensities during desiccation would incur more damage upon rehydration than those exposed to …

Effects Of Wildfire On Plant And Insect Pollinator Communities In The Mojave Desert, Nha Trang Vivian Sam

UNLV Theses, Dissertations, Professional Papers, and Capstones

The changing fire regime of landscapes across the Mojave Desert has prompted considerable research on its effects on plant community recovery, but it has not been widely studied what effects wildfire may have on native pollinators and the vital ecosystem services they provide. Ecological changes from increased wildfire severity from invasive exotic annual grasses will likely continue influencing pollinator habitats and floral resources. Understanding the effects that wildfires have on pollinators is valuable to make decisions as to whether active management and restoration activities are required to conserve ecologically vital pollinator functions. The intention of this thesis was to examine …

Conservation Of Terrestrial Salamanders Through Hemlock Woolly Adelgid Management In Eastern Hemlock Forests Within Great Smoky Mountains National Park, Jonathan Lawrence Cox

Masters Theses

Hemlock woolly adelgid (Adelges tsugae; HWA), an invasive aphid-like arthropod, was first documented on the east coast of the United States in the 1950s. HWA is an herbivore which primarily feeds at the needle base of hemlock tree species (Pinaceae: Tsuga). With no evolutionary defenses and few biotic controls, the eastern and Carolina hemlock (Tsuga canadensis and Tsuga carolinensis) serve as the primary diet of HWA in eastern North America. The invasive pest began to spread rapidly throughout the hemlock’s range causing defoliation and death of the trees within 4 – 10 years. With the …

The Effects Of Multiple Stressors On Stream Communities: The Convergence Of Drought, Nutrient Pollution, And Invasive Species, Robert Joseph Fournier Iii

Graduate Theses and Dissertations

Freshwater systems experience multi-faceted degradation from a variety of ecological and environmental stressors. Three common stressors in these systems, drought, nutrient pollution, and invasive species, have wide-ranging effects on stream population- community- and ecosystem dynamics. We have a broad understanding of how each of these stressors works to influence stream systems independently. However, we still know relatively little about if, and how, these stressors might interact when they co-occur. Though drought is a natural part of many stream systems, all three of these stressors can be exacerbated or facilitated by anthropogenic actions. Accordingly, as human population and resource use continue …

Neogene And Quaternary Events Shaped Diversification And Speciation In Bhutanese Rheophilic Fishes Of The Family Nemacheilidae (Cypriniformes) And Sisoridae (Siluriformes), Karma Wangchuk

Graduate Theses and Dissertations

Biogeography of the Himalayan region [to include the Qinghai-Tibetan Plateau (QTP)] evolved over a ~30M year span, catalyzed by the collision of the Indian and Eurasian plates. The resulting uplift produced major ecological and climatic effects, that in turn drove the diversification of biodiversity. As a result, the QTP is designated as a global biodiversity hotspot particularly vulnerable to cumulative climatic effects, including shrinking distributions, declining numbers, and local extinctions. Understanding how the biodiversity within the Himalaya/ QTP was established and maintained is a necessary first step in prioritizing conservation efforts.

Fishes in global montane regions, such as the Himalaya, …

Carbon Metabolism In Cave Subaerial Biofilms, Victoria E. Frazier

Masters Theses

Subaerial biofilms (SABs) grow at the interface between the atmosphere and rock surfaces in terrestrial and subterranean environments around the world. Multi-colored SABs colonizing relatively dry and nutrient-limited cave surfaces are known to contain microbes putatively involved in chemolithoautotrophic processes using inorganic carbon like carbon dioxide (CO₂) or methane (CH₄). However, the importance of CO₂ and CH₄ to SAB biomass production has not been quantified, the environmental conditions influencing biomass production and diversity have not been thoroughly evaluated, and stable carbon and nitrogen isotope compositions have yet to be determined from epigenic cave SABs. …

Fish And Macroinvertebrate Response To Restoration And Conservation Efforts, Madison C. Cogar

MSU Graduate Theses

Fish and macroinvertebrate response to restoration and conservation efforts varies in regards to the size and structure of the system (e.g. headwater streams in WV versus large rivers such as the Mississippi River). This project reviews fish and macroinvertebrate rebound in treated acid mine drainage (AMD) streams in WV as well as macroinvertebrate drift patterns in the Mississippi and Missouri Rivers. AMD is a product of a chemical reaction resulting in an acidic water outflow from mining sites, which may harm aquatic life. As a response, passive AMD treatment systems have been installed. I tested the effectiveness of remediation by …

Linking Mosquito Surveillance To Dengue Fever Through Bayesian Mechanistic Modeling, Clinton B. Leach, Jennifer A. Hoeting, Kim M. Pepin, Alvaro E. Eiras, Mevin B. Hooten, Colleen T. Webb

USDA Wildlife Services: Staff Publications

Our ability to effectively prevent the transmission of the dengue virus through targeted control of its vector, Aedes aegypti, depends critically on our understanding of the link between mosquito abundance and human disease risk. Mosquito and clinical surveillance data are widely collected, but linking them requires a modeling framework that accounts for the complex non-linear mechanisms involved in transmission. Most critical are the bottleneck in transmission imposed by mosquito lifespan relative to the virus’ extrinsic incubation period, and the dynamics of human immunity. We developed a differential equation model of dengue transmission and embedded it in a Bayesian hierarchical …

The Birds Of The Nebraska Sandhills, Paul A. Johnsgard, Josef Kren

Zea E-Books Collection

This book provides basic information on all the species of birds that have been reliably reported from the Nebraska Sandhills region as of 2020. They include 46 permanent residents, 125 summer breeders, 125 migrants, and 102 rare or accidental species, totaling 398 species. Information on status, migration, and habitats is provided for all but the very rare and accidental species. There are also descriptions of 46 refuges, preserves, and other public-access natural areas in the region and seven suggested birding routes. The text contains more than 90,000 words and over 250 literature references along with more than 20 drawings, 9 …

Multidecadal Analysis Of Beach Loss At The Major Offshore Sea Turtle Nesting Islands In The Northern Arabian Gulf, Rommel H. Maneja, Jeffrey D. Miller, Wenzhao Li, Rejoice Thomas, Hesham El-Askary, Sachi Perera, Ace Vincent B. Flandez, Abdullajid U. Basali, Joselito Francis A. Alcaria, Jinoy Gopalan, Surya Prakash Tiwari, Mubarak Al-Jedani, Perdana K. Prihartato, Ronald A. Loughlan, Ali Qasem, Mohamed A. Qurban, Wail Falath, Daniele Struppa

Mathematics, Physics, and Computer Science Faculty Articles and Research

Undocumented historical losses of sea turtle nesting beaches worldwide could overestimate the successes of conservation measures and misrepresent the actual status of the sea turtle population. In addition, the suitability of many sea turtle nesting sites continues to decline even without in-depth scientific studies of the extent of losses and impacts to the population. In this study, multidecadal changes in the outlines and area of Jana and Karan islands, major sea turtle nesting sites in the Arabian Gulf, were compared using available Kodak aerographic images, USGS EROS Declassified satellite imagery, and ESRI satellite images. A decrease of 5.1% and 1.7% …

Spotted Owls And Forest Fire: Comment, Gavin M. Jones, R. J. Gutiérrez, William M. Block, Peter C. Carlson, Emily J. Comfort, Samuel A. Cushman, Raymond J. Davis, Stephanie A. Eyes, Alan B. Franklin, Joseph L. Ganey, Shaula Hedwall, John J. Keane, Rodd Kelsey, Damon B, Lesmeister, Malcolm P. North, Susan L. Roberts, Jeremy T. Rockweit, Jamie S. Sanderlin, Sarah C. Sawyer, Ben Solvesky, Douglas J. Tempel, Ho Yi Wan, A. Leroy Westerling, Gary C. White, M. Zachariah Peery

USDA Wildlife Services: Staff Publications

Western North American forest ecosystems are experiencing rapid changes in disturbance regimes because of climate change and land use legacies (Littell et al. 2018). In many of these forests, the accumulation of surface and ladder fuels from a century of fire suppression, coupled with a warming and drying climate, has led to increases in the number of large fires (Westerling 2016) and the proportion of areas burning at higher severity (Safford and Stevens 2017, Singleton et al. 2018). While the annual area burned by fire is still below historical levels (Taylor et al. 2016), some forest types in the west …

Anthropogenic Change On The Distribution Of Marine Megafauna And Their Prey, Baylie Fadool

Honors Theses

Anthropogenic change is impacting the distribution and survival of marine megafauna and their prey. Humans are changing every aspect of the marine environment, with effects reaching as large as changing the composition of marine environments to directly overexploiting species through the fishing industry. The role that marine megafauna play in balancing ecosystems, including as top apex predators, leads to detrimental results in the absences and population declines of these species. Migrations and declines due to threats on marine apex predator species will alter their environments by causing mesopredator release and changes in community structure, which is often associated with reduced …

Loci Associated With Antibody Response In Feral Swine (Sus Scrofa) Infected With Brucella Suis, Courtney F. Pierce, Vienna R. Brown, Steven C. Olsen, Paola Boggiatto, Kerri Pedersen, Ryan S. Miller, Scott E. Speidel, Timothy J. Smyser

USDA Wildlife Services: Staff Publications

Feral swine (Sus scrofa) are a destructive invasive species widespread throughout the United States that disrupt ecosystems, damage crops, and carry pathogens of concern for the health of domestic stock and humans including Brucella suis—the causative organism for swine brucellosis. In domestic swine, brucellosis results in reproductive failure due to abortions and infertility. Contact with infected feral swine poses spillover risks to domestic pigs as well as humans, companion animals, wildlife, and other livestock. Genetic factors influence the outcome of infectious diseases; therefore, genome wide association studies (GWAS) of differential immune responses among feral swine can provide …

A Review Of Avian Influenza A Virus Associations In Synanthropic Birds, Susan A. Shriner, J. Jeffrey Root

USDA Wildlife Services: Staff Publications

Avian influenza A viruses (IAV) have received significant attention due to the threat they pose to human, livestock, and wildlife health. In this review, we focus on what is known about IAV dynamics in less common avian species that may play a role in trafficking IAVs to poultry operations. Specifically, we focus on synanthropic bird species. Synanthropic species, otherwise known as peridomestic, are species that are ecologically associated with humans and anthropogenically modified landscapes, such as agricultural and urban areas. Aquatic birds such as waterfowl and shorebirds are the species most commonly associated with avian IAVs, and are generally considered …

Instability Of Glucocorticoid Metabolites In Coyote Scats: Implications For Field Sampling, Erika T. Stevenson, Eric M. Gese, Lorin A. Neuman-Lee, Susannah S. French

USDA Wildlife Services: Staff Publications

Studying physiologic stress responses can assist in understanding the welfare of animals. One method of measuring the physiologic stress response is evaluating concentrations of glucocorticoid metabolites in feces. Previously, using an adrenocorticotropic hormone challenge, we found fecal glucocorticoid metabolite levels were a reliable indicator of physiologic stress response in coyotes (Canis latrans). We determine whether glucocorticoid metabolite concentrations remain stable when collecting feces over a 2-week period, a timeframe commonly used in scat surveys for wild canids. We collected feces from 6 captive coyotes maintained at the U.S. Department of Agriculture, Wildlife Services, National Wildlife Research Center, Predator …

Tools, Techniques And Teamwork: Transferring New Technologies For Wildlife Management, Conservation And Economic Development, John Eisemann, Gail Keirn

USDA Wildlife Services: Staff Publications

Did you ever wonder who invented radio telemetry? Or breakaway snares? What about the bird repellent methyl anthranilate or the livestock protection collar? These and many other tools used in wildlife damage management resulted from creative thinking by biologists, technicians, researchers and managers working to solve complex wildlife issues. Over the past 90 years, these “aha moments” within the U.S. Department of Agriculture’s Wildlife Services program have ranged from developing novel scare devices, traps and vaccines to exploiting an animal’s visual capabilities to stop unwanted behaviors. Once discovered, these unique ideas may lead to practical, feasible and cost-effective wildlife damage …

Water Quality Assessment In The Occurrence Of Acanthaster Spp. (Crown-Of-Thorns Starfish, Cots) On Coral Reefs In Menjangan Island, Bali, Indonesia, Novia Arinda Pradisty, Eghbert Elvan Ampou, Rizki Hanintyo

Makara Journal of Science

Aquatic stressors are known to cause biological impairment that can result in biodiversity loss in several Marine Protected Areas (MPA), including in Menjangan Island, West Bali National Park. The objectives of this study were to correlate the changes in water quality parameters with the biological effect of Crown-of-Thorns starfish (CoTS) population dynamics and to assess the most applicable parameters for continuous environmental monitoring. Field observations and surveys were conducted three times in 2017, during the wet season, dry season and season transition, in order to assess the effect of seasonal variability. Redundancy Analysis (RDA) was performed to determine the relationship …

Vampire Bats: Preparing For Range Expansion Into The U.S., Michael J. Bodenchuk, David L. Bergman

USDA Wildlife Services: Staff Publications

The common vampire bat apparently is expanding its range northwards in Mexico and seems poised to enter the southern United States. Climate models predict suitable habitat in the U.S. in south Texas and parts of southern Arizona. While vampire bats’ northward range expansion is not unexpected, the fact that this species brings a strain of rabies that impacts livestock and people warrants a strategic response. Annual economic damages from bats are estimated between $7M and $9M, largely associated with deaths of livestock from rabies. To prepare for the emerging rabies issue, USDA Wildlife Services programs in Texas and Arizona have …

Paleoenvironmental Reconstruction Of Quaternary Saltville, Virginia, Using Ostracode Autecology, Austin Gause

Electronic Theses and Dissertations

The Saltville valley in southwestern Virginia is home to Quaternary localities containing paleontological and archaeological remains. Historically the valley has been mined for salt and the small lakes, ponds and springs along the valley floor have a brackish signature. A preliminary report on the site’s ostracode fauna suggested that the site’s water was not always saline. This study analyzed modern and Quaternary ostracodes to understand the valley’s hydrologic and chemical evolution. Sediments contained primarily freshwater species, including the environmentally sensitive Candona crogmaniana. The presence of Pelocypris tuberculatum and a new Fabaeformiscandona species throughout a vertical section spanning the latest Pleistocene …

An Evaluation Of Bird And Bat Mortality At Wind Turbines In The Northeastern United States, Daniel Y. Choi, Thomas W. Wittig, Bryan M. Kluever

USDA Wildlife Services: Staff Publications

Wind energy offers substantial environmental benefits, but wind facilities can negatively impact wildlife, including birds and bats. Researchers and managers have made major efforts to chronicle bird and bat mortality associated with wind facilities, but few studies have examined the patterns and underlying mechanisms of spatial patterns of fatalities at wind facilities. Understanding the horizontal fall distance between a carcass and the nearest turbine pole is important in designing effective search protocols and estimating total mortality. We explored patterns in taxonomic composition and fall distance of bird and bat carcasses at wind facilities in the Northeastern United States using publicly …

Estimation Of Wildlife Damage From Federal Crop Insurance Data, Sophie Mckee, Stephanie A. Shwiff, Aaron M. Anderson

USDA Wildlife Services: Staff Publications

BACKGROUND: Wildlife damage to crops is a persistent and costly problem for many farmers in the USA. Most existing estimates of crop damage have relied on direct assessment methods such as field studies conducted by trained biologists or surveys distributed to farmers. In this paper, we describe a new method of estimating wildlife damage that exploits federal crop insurance data. We focused our study on four crops: corn, soybean, wheat, and cotton, chosen because of their economic importance and their vulnerability to wildlife damage.

RESULTS: We determined crop-raiding hot spots across the USA over the 2015–2019 period and identified the …

Impact Of Disturbance Regimes On Community And Landscape Biodiversity In Atlantic Coastal Pine Barren Ecoregion Streams, Sean T. Mccanty

Graduate Doctoral Dissertations

Streams are dynamic systems shaped by geographic location, hydrology, riparian vegetation, and in-stream habitat. Furthermore, ecosystem disturbance plays a major role in structuring stream communities and ecosystem processes. Disturbances include natural occurrences, such as flooding, drought, and fire events and anthropogenic disturbances such as land use changes, damming, and pollution. Agricultural use acts as a press disturbance regime, homogenizing the surrounding landscape and simplifying in-stream habitat, leaving legacy effects after farming ceases. Active restoration is intended to ameliorate these effects by reintroducing variation, with the goal of shifting the ecosystem into a more diverse and natural state. The act of …

Spatial Ecology And Resource Selection Of Bighorn Sheep (Ovis Canadensis) Ewes In A Prairie Badlands Population, Erin Wood

School of Natural Resources: Dissertations, Theses, and Student Research

The basic spatial ecology and habitat relationships of female bighorn sheep in Nebraska are poorly understood. Establishing seasonal patterns of space use and resource selection for this population at the margin of their historical and current range addresses a key knowledge gap and provides important baseline information for ongoing conservation efforts in Nebraska. We deployed GPS radio-collars on 56 adult ewes in western Nebraska to quantify seasonal space use, movements, and resource selection of ewes. To investigate spatial ecology, we quantified movements of ewes and the factors that influence home range size, seasonal use, and spatial stability across seasons. Home …

Effects Of Freshwater Crayfish On Influenza A Virus Persistence In Water, J. Jeffrey Root, Jeremy W. Ellis, Susan A. Shriner

USDA Wildlife Services: Staff Publications

Several investigations have recently assessed the ability of some aquatic invertebrates to act as tools for avian influenza A virus (IAV) surveillance as well as their potential role(s) in IAV ecology. Because of this, as well as the high IAV seroprevalence rates noted in select mesocarnivores that commonly inhabit aquatic and semi-aquatic habitats, we evaluated the effects that freshwater crayfish have on IAV in water at three dose levels and monitored for the presence of IAV in crayfish tissues (gill and green gland) and haemolymph at multiple time points. At relatively high, medium 432 and low (approximately 10 , 10 …

A Framework For Aquatic Invasive Species Surveillance Site Selection And Prioritization In The Us Waters Of The Laurentian Great Lakes, Andrew J. Tucker, W. Lindsay Chadderton, Gust Annis, Alisha D. Davidson, Joel Hoffman, Jon Bossenbroek, Stephen Hensler, Michael Hoff, Erika Jensen, Donna R. Kashian, Sarah Lesage, Timothy Strakosh

Environmental Science and Geology Faculty Research Publications

Risk-based prioritization for early detection monitoring is of utmost importance to prevent and mitigate invasive species impacts and is especially needed for large ecosystems where management resources are not sufficient to survey all locations susceptible to invasion. In this paper we describe a spatially-explicit and quantitative approach for identifying the highest risk sites for aquatic invasive species (AIS) introduction into the United States’ waters of the Laurentian Great Lakes, a vast inland sea with a surface area of 246,049 square km and a shoreline length of 16,431 km. We compiled data from geospatial metrics available across all of the US …

Plant And Soil Responses To Sediment Deposition And Nutrient Enrichment In Healthy, Deteriorating, And Newly Created Coastal Marshes In Barataria Basin, Louisiana: Implications For Mississippi River Sediment Diversions, Gina N. Groseclose

LSU Master's Theses

To offset wetland loss in the Mississippi River Delta, sediment diversions that will re-introduce river water and sediment into wetlands are being planned for the lower Mississippi River. River diversions will also deliver high nutrient loads, which may reduce belowground plant productivity, reducing inputs of organic matter important for marsh accretion to keep pace with sea-level rise. However, belowground productivity responses to the combinatory effects of sediment and nutrients are unknown. To test the hypotheses that nutrient enrichment and sediment deposition interact to influence vegetation structure, belowground plant productivity and decomposition, and surface accretion, a field experiment was implemented in …

An Applied Ecology Of Fear Framework: Linking Theory To Conservation Practice, Kaitlyn M. Gaynor, Michael J. Cherry, Sophie L. Gilbert, Michael T. Kohl, Courtney L. Larson, Thomas M. Newsome, Laura R. Prugh, Justin P. Suraci, Julie K. Young, Justine A. Smith

USDA Wildlife Services: Staff Publications

Research on the ecology of fear has highlighted the importance of perceived risk from predators and humans in shaping animal behavior and physiology, with potential demographic and ecosystem-wide consequences. Despite recent conceptual advances and potential management implications of the ecology of fear, theory and conservation practices have rarely been linked. Many challenges in animal conservation may be alleviated by actively harnessing or compensating for risk perception and risk avoidance behavior in wild animal populations. Integration of the ecology of fear into conservation and management practice can contribute to the recovery of threatened populations, human–wildlife conflict mitigation, invasive species management, maintenance …

Characterization Of Shallow Subsurface Hydrology In Large Fine-Grained Floodplains, Mary Grace Lemon

LSU Doctoral Dissertations

Floodplains are hydrologically dynamic, receiving water from overbank events, hyporheic flows, local precipitation, and regional groundwater sources. These sources are variously important contributors to the heterogeneous floodplain water pool that includes matrix water in soil micropores, mobile water in soil macropores, groundwater below the rooting zone, ephemeral to seasonal surface storage, and permanent surface water features such as oxbow lakes, sloughs, and other secondary channels. All sources may be ecologically relevant for floodplain vegetation, but the exact roles of each source in both controlling soil water and shallow groundwater recharge and in controlling floodplain water drainage are not well understood, …

A Survey Of Dairy-Goat Keeping In Zanzibar, Tiffanie Stone, Charles A. Francis, L. O. Eik

Department of Agronomy and Horticulture: Faculty Publications

Dairy goats with improved genetics for milk production were recently introduced onto small-scale farms in Zanzibar through governmental and non-governmental projects. These projects were meant to support small-scale farmers by improving both income and household nutrition through milk production. No follow up had been conducted to understand what effects dairy goat keeping had on these small-scale farms, or how they could be improved. A survey of 193 dairy goat farmers in Zanzibar was conducted, including 30% and 60% of all dairy goat farmers on Unguja and Pemba, the two largest islands, respectively. The objective was to understand the impact keeping …